mRNA_L-elsbetiae_contig14786.3470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14786.3470.1
Unique NamemRNA_L-elsbetiae_contig14786.3470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A8M9PVQ6_DANRE (histone H4-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PVQ6_DANRE)

HSP 1 Score: 202 bits (515), Expect = 9.730e-66
Identity = 104/107 (97.20%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            +KLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   11 SKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A7S3P4Q1_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4Q1_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.630e-65
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            N  IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   16 NSFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 122
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A7S4HYH3_9STRA (Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4HYH3_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.390e-65
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            N+ IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   17 NQNIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 123
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: W7TR01_9STRA (Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR01_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.620e-65
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            N  IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   19 NSQIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTALDVVYALKRQGRTLYGFGG 125
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: W5QFP4_SHEEP (Histone H4 n=2 Tax=Eutheria TaxID=9347 RepID=W5QFP4_SHEEP)

HSP 1 Score: 201 bits (510), Expect = 3.960e-65
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    7 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A096MDK0_POEFO (Histone H4 n=4 Tax=Poecilia TaxID=8080 RepID=A0A096MDK0_POEFO)

HSP 1 Score: 201 bits (510), Expect = 4.650e-65
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            N+ IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    5 NERIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 111
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A8J1LTD2_XENLA (Histone H4 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A8J1LTD2_XENLA)

HSP 1 Score: 201 bits (510), Expect = 5.460e-65
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    7 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   12 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 116
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A6P6PUQ0_CARAU (Histone H4 n=2 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6PUQ0_CARAU)

HSP 1 Score: 201 bits (510), Expect = 5.820e-65
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1 
Query:    7 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   14 LIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 118
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BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: UPI001CFDEE75 (histone H4 isoform X2 n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFDEE75)

HSP 1 Score: 200 bits (509), Expect = 6.000e-65
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            NK  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    2 NKQTMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 108
[Close]
BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Match: A0A7S3KWS3_9STRA (Histone H4 n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWS3_9STRA)

HSP 1 Score: 201 bits (510), Expect = 7.070e-65
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 NKLIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 321
            ++ IMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQG+TLYGFGG
Sbjct:   18 HQFIMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGKTLYGFGG 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14786.3470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8M9PVQ6_DANRE9.730e-6697.20histone H4-like n=1 Tax=Danio rerio TaxID=7955 Rep... [more]
A0A7S3P4Q1_9STRA1.630e-6597.20Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655... [more]
A0A7S4HYH3_9STRA3.390e-6597.20Histone H4 n=4 Tax=Bacillariophyta TaxID=2836 RepI... [more]
W7TR01_9STRA3.620e-6597.20Histone H4 n=4 Tax=Monodopsidaceae TaxID=425072 Re... [more]
W5QFP4_SHEEP3.960e-6598.10Histone H4 n=2 Tax=Eutheria TaxID=9347 RepID=W5QFP... [more]
A0A096MDK0_POEFO4.650e-6596.26Histone H4 n=4 Tax=Poecilia TaxID=8080 RepID=A0A09... [more]
A0A8J1LTD2_XENLA5.460e-6598.10Histone H4 n=1 Tax=Xenopus laevis TaxID=8355 RepID... [more]
A0A6P6PUQ0_CARAU5.820e-6598.10Histone H4 n=2 Tax=Carassius auratus TaxID=7957 Re... [more]
UPI001CFDEE756.000e-6596.26histone H4 isoform X2 n=1 Tax=Gracilinanus agilis ... [more]
A0A7S3KWS3_9STRA7.070e-6596.26Histone H4 n=1 Tax=Amphora coffeiformis TaxID=2655... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14786contigL-elsbetiae_contig14786:3009..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog157072.XP_008863623.1
KEGG koko:K11254
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG3467@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size324
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.8846333-UTR-L-elsbetiae_contig14786:3008..30201622815595.8846333-UTR-L-elsbetiae_contig14786:3008..3020Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14786 3009..3020 +
1691682980.8022048-UTR-L-elsbetiae_contig14786:3008..30201691682980.8022048-UTR-L-elsbetiae_contig14786:3008..3020Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14786 3009..3020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.8956518-CDS-L-elsbetiae_contig14786:3020..33321622815595.8956518-CDS-L-elsbetiae_contig14786:3020..3332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14786 3021..3332 +
1691682980.8128505-CDS-L-elsbetiae_contig14786:3020..33321691682980.8128505-CDS-L-elsbetiae_contig14786:3020..3332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14786 3021..3332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14786.3470.1prot_L-elsbetiae_contig14786.3470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14786 3021..3332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14786.3470.1

>prot_L-elsbetiae_contig14786.3470.1 ID=prot_L-elsbetiae_contig14786.3470.1|Name=mRNA_L-elsbetiae_contig14786.3470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*
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mRNA from alignment at L-elsbetiae_contig14786:3009..3332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14786.3470.1 ID=mRNA_L-elsbetiae_contig14786.3470.1|Name=mRNA_L-elsbetiae_contig14786.3470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig14786:3009..3332+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAACTCATCATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTACTCCGCGACAACATCCAGGGCA
TTACCAAGCCTGCCATCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGT
ATCTCGGGACTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCT
CGAGAACGTCATCCGCGACTCGGTCACCTACACCGAGCACGCTCGCCGGA
AGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGC
ACCCTCTACGGATTCGGGGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14786:3009..3332+

>mRNA_L-elsbetiae_contig14786.3470.1 ID=mRNA_L-elsbetiae_contig14786.3470.1|Name=mRNA_L-elsbetiae_contig14786.3470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig14786:3009..3332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAAGGGCGGCGCCAA
GCGCCACCGGAAGGTACTCCGCGACAACATCCAGGGCATTACCAAGCCTG
CCATCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGGACTC
ATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTCGAGAACGTCAT
CCGCGACTCGGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTGACCG
CCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGA
TTCGGGGGCTAAATGTCTGGACGCGGAAAGGGCGGTAAGGGTCTGGGCAA
GGGCGGCGCCAAGCGCCACCGGAAGGTACTCCGCGACAACATCCAGGGCA
TTACCAAGCCTGCCATCCGCCGTCTCGCTCGCCGTGGCGGTGTCAAGCGT
ATCTCGGGACTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCT
CGAGAACGTCATCCGCGACTCGGTCACCTACACCGAGCACGCTCGCCGGA
AGACCGTGACCGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGC
ACCCTCTACGGATTCGGGGGCTAA
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