mRNA_L-elsbetiae_contig14776.3463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14776.3463.1
Unique NamemRNA_L-elsbetiae_contig14776.3463.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A6H5L6V2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V2_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 6.640e-48
Identity = 82/102 (80.39%), Postives = 91/102 (89.22%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRRGLEPKA--RSSLTKMASPRAALDRLQKKIGSPLHSR 302
            SL KCFPEYDGP+GEAMPALRFIEQKYKQAMLSKVPGK VTVH+IAARVRMDMKIAFGEVKDEIRR  + K+  R S +K+ SPRAA++RLQ KIGSPL+SR
Sbjct:   40 SLKKCFPEYDGPDGEAMPALRFIEQKYKQAMLSKVPGKDVTVHVIAARVRMDMKIAFGEVKDEIRRSFDSKSARRKSFSKLGSPRAAIERLQ-KIGSPLNSR 140          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: D8LTN0_ECTSI (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN0_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.360e-44
Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRRGLEPKA---RSSLTKMASPRAALDRLQKKIGSPLHSR 302
            SL KCFPEYDGP+GEAMPALRFIEQKYKQAMLSKVPGK VTVHIIAARVRMDMKIAFGEVKDEIRR  + K+   + S +K+ SPRAA++RLQ KIGSPL+SR
Sbjct:  282 SLKKCFPEYDGPDGEAMPALRFIEQKYKQAMLSKVPGKDVTVHIIAARVRMDMKIAFGEVKDEIRRSFDSKSAGRKKSFSKLGSPRAAIERLQ-KIGSPLNSR 383          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.370e-22
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIR 197
            SL  CFPEYDGPEGEA PAL FIE+KYK  M    PGK V +H++AARVRMDMKIAFGEVK++I+
Sbjct:  173 SLKVCFPEYDGPEGEARPALEFIEKKYKDIMDKYCPGKGVIIHVVAARVRMDMKIAFGEVKEQIK 237          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A7S2Y0R1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0R1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.630e-22
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRR 200
            SL  CFPEYDG EGE  PAL FI+ KYK  M   VPGK V + +IAARVRMDMK+AFGEVKDEI++
Sbjct:  107 SLKNCFPEYDGHEGEMNPALDFIQDKYKAVMEKHVPGKPVQIFVIAARVRMDMKMAFGEVKDEIKK 172          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A6S9GGW2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GGW2_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 1.760e-21
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIR 197
            SL KCFPEYDGP+GE  PAL FIE KYK  M    PGK V++ +IAARVRMDMK+AFGEVKD +R
Sbjct:  281 SLKKCFPEYDGPDGEMQPALEFIEGKYKTVMEQHCPGKEVSLFVIAARVRMDMKMAFGEVKDMVR 345          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A835Z6Q6_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.420e-20
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIR 197
            SL  CFP YDGP+GE  PAL +IE+KY + M    PGK V VH++AARVRMDMKIAFGEVK++I+
Sbjct:  279 SLKVCFPAYDGPDGEVRPALEYIEKKYTEVMDKYCPGKGVNVHVVAARVRMDMKIAFGEVKEQIK 343          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A812S7L1_SYMMI (GpaH protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7L1_SYMMI)

HSP 1 Score: 89.0 bits (219), Expect = 1.620e-18
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 3
Query:    6 LTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRR 200
            L+ CFPEYDGP G+  PA+ FIE+KY+  M    PGK V +H+I ARVRMDMKIAFGEVK+ +++
Sbjct:  274 LSNCFPEYDGPPGKVRPAVEFIEKKYQDIMNRVCPGKKVFIHVIEARVRMDMKIAFGEVKETLKK 338          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A835YY90_9STRA (GPA4, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY90_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.360e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIR 197
            SL  CFPEY GP+G+   AL+F+E  +K  M    PGKHV   ++AARVRMDMKIA+ EVKD ++
Sbjct:  274 SLRACFPEYSGPDGDVHAALQFVEGAFKAVMNEACPGKHVHTQVVAARVRMDMKIAWSEVKDTLK 338          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: D8LBA2_ECTSI (GPA4, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBA2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.200e-14
Identity = 30/65 (46.15%), Postives = 49/65 (75.38%), Query Frame = 3
Query:    6 LTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRR 200
            L+ CFPE+ GPE +   AL +++ +Y + +   VPGK +  H++AARVRMDMK+A+G+VK++++R
Sbjct:  282 LSVCFPEFPGPENDVHAALEYVQAEYSKILEEAVPGKELHAHVVAARVRMDMKVAWGDVKEQLKR 346          
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Match: A0A835ZGM8_9STRA (GPA5, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGM8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.240e-10
Identity = 35/96 (36.46%), Postives = 51/96 (53.12%), Query Frame = 3
Query:    3 SLTKCFPEYDGPEGEAMPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRRGLEPKARSSLTKMASPRAALDRLQKKIGSP 290
            SL  CFPEY+G +G  M A+ F+E K++  M    PGK +T H +AARVRM+ +  + ++   I+     K   S     SP+  L      +GSP
Sbjct:  281 SLKTCFPEYEGEDGNVMAAIEFVENKFRGVMAQATPGKPLTTHCMAARVRMECRQGWNDIMQGIKGEKGGKGTLSPFSKHSPQPGL------LGSP 370          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14776.3463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L6V2_9PHAE6.640e-4880.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTN0_ECTSI1.360e-4479.61GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A835YXT9_9STRA5.370e-2270.77P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2Y0R1_9STRA9.630e-2268.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S9GGW2_HETAK1.760e-2169.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835Z6Q6_9STRA3.420e-2064.62GPA5, alpha subunit of a heterotrimeric G protein ... [more]
A0A812S7L1_SYMMI1.620e-1860.00GpaH protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A835YY90_9STRA1.360e-1555.38GPA4, alpha subunit of a heterotrimeric G protein ... [more]
D8LBA2_ECTSI4.200e-1446.15GPA4, alpha subunit of a heterotrimeric G protein ... [more]
A0A835ZGM8_9STRA3.240e-1036.46GPA5, alpha subunit of a heterotrimeric G protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14776contigL-elsbetiae_contig14776:1374..2579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D8LTN0
Preferred namegpaH
KEGG koko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryother localisation
GOsGO:0001664,GO:0003674,GO:0003824,GO:0003924,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005834,GO:0005886,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0008150,GO:0009898,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0010810,GO:0010811,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019897,GO:0019898,GO:0022407,GO:0022409,GO:0023051,GO:0023052,GO:0030155,GO:0031234,GO:0031683,GO:0032092,GO:0032101,GO:0032103,GO:0032991,GO:0040012,GO:0040017,GO:0043393,GO:0043937,GO:0043938,GO:0044093,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044877,GO:0045595,GO:0045785,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0050923,GO:0050924,GO:0051094,GO:0051098,GO:0051099,GO:0051716,GO:0065007,GO:0065009,GO:0071944,GO:0098552,GO:0098562,GO:0098796,GO:0098797,GO:1900120,GO:1900122,GO:1902494,GO:1903664,GO:1903665,GO:1903667,GO:1903669,GO:1905360
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Exons3
Model size377
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14776.3463.1prot_L-elsbetiae_contig14776.3463.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14776 1424..2507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2619958-UTR-L-elsbetiae_contig14776:1373..14231622815595.2619958-UTR-L-elsbetiae_contig14776:1373..1423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14776 1374..1423 +
1691682980.4660468-UTR-L-elsbetiae_contig14776:1373..14231691682980.4660468-UTR-L-elsbetiae_contig14776:1373..1423Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14776 1374..1423 +
1622815595.3183024-UTR-L-elsbetiae_contig14776:2507..25791622815595.3183024-UTR-L-elsbetiae_contig14776:2507..2579Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14776 2508..2579 +
1691682980.512008-UTR-L-elsbetiae_contig14776:2507..25791691682980.512008-UTR-L-elsbetiae_contig14776:2507..2579Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14776 2508..2579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.2738657-CDS-L-elsbetiae_contig14776:1423..14621622815595.2738657-CDS-L-elsbetiae_contig14776:1423..1462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 1424..1462 +
1691682980.478032-CDS-L-elsbetiae_contig14776:1423..14621691682980.478032-CDS-L-elsbetiae_contig14776:1423..1462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 1424..1462 +
1622815595.2881453-CDS-L-elsbetiae_contig14776:1879..19541622815595.2881453-CDS-L-elsbetiae_contig14776:1879..1954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 1880..1954 +
1691682980.487942-CDS-L-elsbetiae_contig14776:1879..19541691682980.487942-CDS-L-elsbetiae_contig14776:1879..1954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 1880..1954 +
1622815595.3042996-CDS-L-elsbetiae_contig14776:2366..25071622815595.3042996-CDS-L-elsbetiae_contig14776:2366..2507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 2367..2507 +
1691682980.5007424-CDS-L-elsbetiae_contig14776:2366..25071691682980.5007424-CDS-L-elsbetiae_contig14776:2366..2507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14776 2367..2507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14776.3463.1

>prot_L-elsbetiae_contig14776.3463.1 ID=prot_L-elsbetiae_contig14776.3463.1|Name=mRNA_L-elsbetiae_contig14776.3463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MPALRFIEQKYKQAMLSKVPGKHVTVHIIAARVRMDMKIAFGEVKDEIRR
GLEPKARSSLTKMASPRAALDRLQKKIGSPLHSR*
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mRNA from alignment at L-elsbetiae_contig14776:1374..2579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14776.3463.1 ID=mRNA_L-elsbetiae_contig14776.3463.1|Name=mRNA_L-elsbetiae_contig14776.3463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig14776:1374..2579+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGCCTGACGAAGTGCTTCCCGGAATACGATGGGCCAGAGGGTGAGGCC ATGCCGGCCTTGAGATTCATCGAGCAAAAATATAAGCAGGTATTTAATAA CCAGAGAGCTTTAGTCCAGAGAGGAAAATCTACATTGAGAGTGAGTGTTC TCGACGCGAGCACTTTTGCCTGGGAGATCCTGTCGGGATATGATAATTAC AGGTAATTTGTTGACACCAAAAGGAGAGGTTTTAGGTCGAAGTTCGTTGA TGGAGTGAATTACATTGAAGCCCTATAAACCACAACAGTCCACACATTGA TATAGAGTTAGGGTAAGGTATCTCACGATGAAGTGGCTTGAGATTCAAAT TACATACGAGATAGACTAATAGATAAGTCATATGTATGATACGTGACGCG ACGTTCAGGATCCTAATGCAGGCGAGGTTTTCCGTCCGGGGACAAATTCA TTCACGCGATTTCACTGAAATTGTGCGGCTTTCTGCCAAATCTGACCTTC GTGCAGGCGATGTTAAGCAAGGTCCCGGGGAAGCATGTTACGGTGCACAT CATTGCGGCCAGAGTTAGAATGGACATGAAGGTGGGTGAAAACATCGTGA TTTGCACAAGCTCTCCTCCAGAAATTCAAGTTTTTAGGTAGATATAACTT CGACGGGCGTGAATATCTAGATATTCTAGATAGACTATGCGTGTTCGATA GATTATCCTACATGATGATTTTTGCAAATACTGTGTGCAAGAAGCTAGTA GTGAGTGAATGGAGAAAGATGGCGCACCGGCGCCGCCCTGCCTCGAGTCT ATCGACAAGAGCAGCTCGCACGGGTTGACGGCTGAGTTAACGTACCCGCC TTGTTGGCTTTGTATCCAATGTATGTTGTTGTTGTCTTCACATTAAAATG ATGATGGTTATTGTTTGCTATCAAAAAACTCACACAAATGAAGCATGCAA CCTAACTTAGAGTGAGAAAAGTGGATGCTTGTTATTTGTCCAGATTGCGT TCGGGGAAGTCAAGGATGAGATAAGGCGTGGGCTGGAGCCCAAGGCTCGT TCTTCTTTGACAAAGATGGCATCACCCAGAGCCGCGTTAGACCGACTCCA AAAGAAGATCGGTTCTCCGCTTCACTCAAGATAACGAGGAGGCACAACAG TAGAGTGTAGAACGCAAGCAGCTTTCTTCCTTCTTCGTGTGTCAGGATTT CGACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14776:1374..2579+

>mRNA_L-elsbetiae_contig14776.3463.1 ID=mRNA_L-elsbetiae_contig14776.3463.1|Name=mRNA_L-elsbetiae_contig14776.3463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig14776:1374..2579+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCCTTGAGATTCATCGAGCAAAAATATAAGCAGATGCCGGCCTT
GAGATTCATCGAGCAAAAATATAAGCAGGCGATGTTAAGCAAGGTCCCGG
GGAAGCATGTTACGGTGCACATCATTGCGGCCAGAGTTAGAATGGACATG
AAGGCGATGTTAAGCAAGGTCCCGGGGAAGCATGTTACGGTGCACATCAT
TGCGGCCAGAGTTAGAATGGACATGAAGATTGCGTTCGGGGAAGTCAAGG
ATGAGATAAGGCGTGGGCTGGAGCCCAAGGCTCGTTCTTCTTTGACAAAG
ATGGCATCACCCAGAGCCGCGTTAGACCGACTCCAAAAGAAGATCGGTTC
TCCGCTTCACTCAAGATAAATTGCGTTCGGGGAAGTCAAGGATGAGATAA
GGCGTGGGCTGGAGCCCAAGGCTCGTTCTTCTTTGACAAAGATGGCATCA
CCCAGAGCCGCGTTAGACCGACTCCAAAAGAAGATCGGTTCTCCGCTTCA
CTCAAGATAA
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