mRNA_L-elsbetiae_contig14773.3462.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14773.3462.1
Unique NamemRNA_L-elsbetiae_contig14773.3462.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: D8LM94_ECTSI (Elicitor-inducible LRR receptor-like protein EILP (ISS) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM94_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 4.180e-20
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 FDEPNTPPEATFAPSALPPVSPADDCEDPVGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVR 192
             D P  P   TFAPS  PPVS   DCEDPVG +NQCGG  YEGS CCR G++C  + DCYSE R
Sbjct:    1 MDSPTEPIVGTFAPSVAPPVSTHPDCEDPVGAFNQCGGAGYEGSACCRTGYDCVEMADCYSECR 64
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.680e-18
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 FDEPNTPPEATFAPSALPPVSPADDCEDPVGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVR 192
             D P  P  ATFAPS  PP+S   DCEDPVG +NQCGG  Y+GSTCCR G+EC  + +CYSE R
Sbjct:  430 MDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECR 493
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.010e-17
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:   28 ATFAPSALPPVSPADDCEDPVGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVR 192
            ATFAPS  PPVS   DCEDPVG +NQCGG  YEGSTCCR G++C  + DCY E R
Sbjct:  632 ATFAPSVPPPVSTDPDCEDPVGGFNQCGGPGYEGSTCCRTGYDCEQMADCYFECR 686
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.500e-12
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   55 PVSPADDCEDPVGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVR 192
            PVS   DCEDPVG + QCGG  Y+GSTCCR G+EC  + DCYSE R
Sbjct:  423 PVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECR 468
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.070e-10
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   55 PVSPADDCEDPVGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVR 192
            P  P  DC DPVG Y+QCGG +YEGS CCR G+EC  +  CYS+ R
Sbjct:  288 PTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCR 333
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: A0A067P8I0_PLEOS (Glucanase n=3 Tax=Agaricomycetes TaxID=155619 RepID=A0A067P8I0_PLEOS)

HSP 1 Score: 51.2 bits (121), Expect = 3.960e-5
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 1 
Query:   88 VGDYNQCGGTNYEGSTCCRIGFECNAVTDCYSEVRLSAIPAPTDD 222
            VG++ QCGG NY GST C  G  CN + D Y +   S+ P PT D
Sbjct:   21 VGEWGQCGGINYTGSTTCDAGLVCNVINDYYHQCLTSSGPQPTPD 65
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: A0A813AZL3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813AZL3_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 5.850e-5
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   97 YNQCGGTNYEGSTCCRIGFECNAVTDCYSE 186
            Y QCGG+NY+GSTCC  GF C A TD YS+
Sbjct:  354 YAQCGGSNYQGSTCCEDGFVCKASTDSYSQ 383
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: A0A812S4V1_9DINO (Hypothetical protein (Fragment) n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812S4V1_9DINO)

HSP 1 Score: 50.8 bits (120), Expect = 6.010e-5
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   97 YNQCGGTNYEGSTCCRIGFECNAVTDCYSE 186
            Y QCGG+NY+GSTCC  GF C A TD YS+
Sbjct:  359 YAQCGGSNYQGSTCCEDGFVCKASTDSYSQ 388
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BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Match: A0A1Q9ESU8_SYMMI (Tubulin beta chain n=11 Tax=Eukaryota TaxID=2759 RepID=A0A1Q9ESU8_SYMMI)

HSP 1 Score: 50.8 bits (120), Expect = 6.130e-5
Identity = 20/30 (66.67%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:   97 YNQCGGTNYEGSTCCRIGFECNAVTDCYSE 186
            Y QCGG+NY+GSTCC  GF C A TD YS+
Sbjct: 5095 YAQCGGSNYQGSTCCEDGFVCKASTDSYSQ 5124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14773.3462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LM94_ECTSI4.180e-2060.94Elicitor-inducible LRR receptor-like protein EILP ... [more]
D8LMF4_ECTSI1.680e-1860.94EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LM92_ECTSI4.010e-1767.27EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI1.500e-1265.22EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI1.070e-1058.70EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A067P8I0_PLEOS3.960e-548.89Glucanase n=3 Tax=Agaricomycetes TaxID=155619 RepI... [more]
A0A813AZL3_9DINO5.850e-566.67Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A812S4V1_9DINO6.010e-566.67Hypothetical protein (Fragment) n=3 Tax=Symbiodini... [more]
A0A1Q9ESU8_SYMMI6.130e-566.67Tubulin beta chain n=11 Tax=Eukaryota TaxID=2759 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14773contigL-elsbetiae_contig14773:2565..3174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue5.3e-16
Seed eggNOG ortholog2880.D8LMF4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size335
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.205598-CDS-L-elsbetiae_contig14773:2566..27021622815595.205598-CDS-L-elsbetiae_contig14773:2566..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14773 2567..2702 -
1691682980.4463804-CDS-L-elsbetiae_contig14773:2566..27021691682980.4463804-CDS-L-elsbetiae_contig14773:2566..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14773 2567..2702 -
1622815595.2191405-CDS-L-elsbetiae_contig14773:2977..31741622815595.2191405-CDS-L-elsbetiae_contig14773:2977..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14773 2978..3174 -
1691682980.4566224-CDS-L-elsbetiae_contig14773:2977..31741691682980.4566224-CDS-L-elsbetiae_contig14773:2977..3174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14773 2978..3174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14773.3462.1prot_L-elsbetiae_contig14773.3462.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14773 2567..3174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14773.3462.1

>prot_L-elsbetiae_contig14773.3462.1 ID=prot_L-elsbetiae_contig14773.3462.1|Name=mRNA_L-elsbetiae_contig14773.3462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
FDEPNTPPEATFAPSALPPVSPADDCEDPVGDYNQCGGTNYEGSTCCRIG
FECNAVTDCYSEVRLSAIPAPTDDPMAGPSAAASNGMVPRAAGTALFASS
ATSGTRSAFPK
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mRNA from alignment at L-elsbetiae_contig14773:2565..3174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14773.3462.1 ID=mRNA_L-elsbetiae_contig14773.3462.1|Name=mRNA_L-elsbetiae_contig14773.3462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=610bp|location=Sequence derived from alignment at L-elsbetiae_contig14773:2565..3174- (Laminarionema elsbetiae ELsaHSoW15)
TTCGACGAGCCCAACACTCCGCCCGAGGCTACGTTTGCGCCGTCGGCCCT
TCCTCCGGTGTCTCCTGCCGACGACTGCGAAGACCCCGTCGGGGACTACA
ACCAATGCGGAGGAACTAACTATGAAGGTTCAACTTGCTGCAGGATCGGC
TTCGAGTGCAACGCGGTGACGGACTGCTACTCCGAGGTAAGACTTAGGTT
GAGAATCGCGTAGACCACGTGTATGCATTAGTGTTGTATGTACCATACCT
CTTTAGTTCTATTTGTTATACTTCTCTCCCCCCAAGGCTCATGGTGTGTT
GCATGTTCTTGCCACCTGCTTGAATGCATGCATGCTTCCAGTGGGAGTAC
GTCCGCTCACGTCACTTGCCGTCTTTCCAGGAGGTCTTCCTCGACGAGCT
CGCTGCTCACATCGTCCCTACCCCGCCCGACCACCCGTCCACGTCTCTGC
TCCCTCTTTCCATTATTCCCAGTGCCATCCCAGCGCCGACTGATGATCCG
ATGGCTGGGCCCAGTGCGGCGGCCTCGAATGGGATGGTCCCACGTGCTGC
TGGGACGGCGCTGTTTGCCTCGAGCGCAACGAGTGGTACTCGCAGTGCGT
TCCCGAAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14773:2565..3174-

>mRNA_L-elsbetiae_contig14773.3462.1 ID=mRNA_L-elsbetiae_contig14773.3462.1|Name=mRNA_L-elsbetiae_contig14773.3462.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig14773:2565..3174- (Laminarionema elsbetiae ELsaHSoW15)
TTCGACGAGCCCAACACTCCGCCCGAGGCTACGTTTGCGCCGTCGGCCCT
TCCTCCGGTGTCTCCTGCCGACGACTGCGAAGACCCCGTCGGGGACTACA
ACCAATGCGGAGGAACTAACTATGAAGGTTCAACTTGCTGCAGGATCGGC
TTCGAGTGCAACGCGGTGACGGACTGCTACTCCGAGGTAAGACTTAGTTC
GACGAGCCCAACACTCCGCCCGAGGCTACGTTTGCGCCGTCGGCCCTTCC
TCCGGTGTCTCCTGCCGACGACTGCGAAGACCCCGTCGGGGACTACAACC
AATGCGGAGGAACTAACTATGAAGGTTCAACTTGCTGCAGGATCGGCTTC
GAGTGCAACGCGGTGACGGACTGCTACTCCGAGGTAAGACTTAGTGCCAT
CCCAGCGCCGACTGATGATCCGATGGCTGGGCCCAGTGCGGCGGCCTCGA
ATGGGATGGTCCCACGTGCTGCTGGGACGGCGCTGTTTGCCTCGAGCGCA
ACGAGTGGTACTCGCAGTGCGTTCCCGAAGTGCCATCCCAGCGCCGACTG
ATGATCCGATGGCTGGGCCCAGTGCGGCGGCCTCGAATGGGATGGTCCCA
CGTGCTGCTGGGACGGCGCTGTTTGCCTCGAGCGCAACGAGTGGTACTCG
CAGTGCGTTCCCGAAG
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