mRNA_L-elsbetiae_contig1477.3461.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI) HSP 1 Score: 697 bits (1799), Expect = 3.000e-230 Identity = 447/833 (53.66%), Postives = 524/833 (62.91%), Query Frame = 1
Query: 301 IQRQARVWLARRAVDLKRVHVGLTSKVSEFADRLASSDDSRSVSAVFGQIDKDYRKYERIIGEMQAREDKMAATFVKKVLEKRDADIEGAWTRFVVAAIEHGAGPKHRSDARRAHPHPASLDQRTGASEVHGHEKILVLMERYGIPAYAQTLPSAYLRASLPMHLKLRGGGFVANNSPKSATWN-----------RQRIHNISPPPSSEQSPTQLQVDGAFASQVQ--------SSVSGTSGYPDTSVEDGFRSTVTASVAAGAXXXXXXXXXXXXXXXSPSRTSDQGLSGSIKRSPERQTTAGGDDLGFFGGIXXXXXXGVGVCVGGDGDDG--------RGGTWNNAAGGIVFPEQDAPALRR-AGRDNGSAAGWKSAWDTERESRRLTGDAGSRFPGSSARQDLPSGLNESVERLCAAAFLRGHVPEGLMPKGTTAEEAYQRYLQLPPSLAKIRHEQLCTEASRPVASVLRARGFTTLEQLLPPSKLDYLLGQAGAAADEILAAGFLARELKSKRDESS-GGSRGGDMFSPLPPFSRRGLLGGSRRTP-SSKEGPRDSRAXXXXXXXXXXXXXXXXXXXXXXXTK-----------------KKKGPLRISLEGLGFEGSAEETRKESA-WDPSRYTSRPDEWIRPPPSVRKQRWDDDTNAFLPINNYSFDGLYRRHHPLDPDGVDHDHSFGDEKNTASTGYDNDKGWFEVERQDGT-GQKKNLNRATGAFTSSPAAAS-LSGPPGCGSDSYARRMEAIMREEYGTFFDGMTQSARDMYQHMINDSSSWGSVDDSIGTLLCRAAFHVIEHPSPATRAELAAARERDLVAK 2649
I +QARVWLARRAV L++V VGLTS+VS+ D LASSDDSRS+S VFGQID+DYRKY+RII EMQARED+MA TFV+KVLE+R ADI GAWTRFV AA E+ AG + RSDARRAHP+PAS D+R ASE+H EK++ LMERY IPA+A+ LPSAYLRA+LPMHLKLR V+ K T N R+R++ + P S+E+ + G F VQ SS+S P T+ T + AAGA SPSR S S S ER+T AGG D GGI G G GD D G T +A G D+ +R G S +GW+S WD ERE R LTGDAGSRFPGS RQD+PSGL E+VERLCAAAFLRGHVP GLMPKGTT EEAY+RYL+LPPSLAKIRHEQLCTEAS+PVAS LRARG+T LEQLLP SKL++L QAG+ A E LAA +A E+K KR G G D+FSPL PFSRR L SR P S++ PR R T KKKG LRIS++GL A + + WDPSRYTSRP+EWIRPPPSV KQRWDD AF+P+NNY+FDGLYRRHHPLD D DH D + T D W ++DG GQ+++ +R G + SSP AA LSG G +A+R+E+IM+EEYGTFFDGMTQSA ++YQHMINDS SWGSVDDSIG LL RAAF ++EHPSPATRAELA ARERDLVAK
Sbjct: 37 IDKQARVWLARRAVHLQKVKVGLTSRVSKLTDMLASSDDSRSISTVFGQIDRDYRKYDRIIAEMQAREDEMAVTFVEKVLERRAADIGGAWTRFVGAATEYSAGRRKRSDARRAHPYPASGDKRAAASEIHD-EKLMRLMERYEIPAHAKALPSAYLRAALPMHLKLRSERLVSVE--KGHTQNVVSIDGTQRQKRRRVNTLLPS-SNEEVGARQDGGGVFMPAVQCNSLDEKMSSIS-----PATAA-------ATITTAAGAIN-------------SPSRFSSFEGKRSGAHSCERRTAAGGYD--GAGGIGCRGSDGGGAS--GDEDFGFVERHQTLTRQTSRHAGDGAENVGLDSAGSQRWEGGGGVSTSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKPKRGVGGCGNGSGDDLFSPLSPFSRR-CLARSRAAPISTQRSPRSRRREGLDDCVSDESVRKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGMEQGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAKAFVPVNNYTFDGLYRRHHPLDH-CCDEDHRHVDNERDMVTRGGGDDNWCSEGKRDGAMGQEEHPSRPGGLYRSSPTAADPLSGA--AGGSCFAKRVESIMQEEYGTFFDGMTQSATELYQHMINDSGSWGSVDDSIGILLRRAAFFIVEHPSPATRAELAVARERDLVAK 832
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.100e-16 Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 1366 ERESRRLTGDAGSRFPGSSA----------------------RQDLPSGLNESVERLCAAAFLRGHVPEGLMPKGTTAEEAYQRYLQLPPSLAKIRHEQLCTEASRPVASVLRARGFTTLEQLLPPSKLDYLLGQAGAAADEILAAGFLARELK 1761
ER++R L A +RF G+SA +D+P GL++ RL AA LR VP MP GT+AE A++ YL LPPSLAKI+HEQ +A+RP A+ L A GF + L+P SK+ ++ + G A ILAA LA EL+
Sbjct: 1289 ERKARHLDHAASTRFAGASALTXXXXXXXXXXXXXXXXXXXXXRDIPGGLHDCTGRLLRAALLRSFVPS-TMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEELR 1441
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Match: A0A7S2E736_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E736_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 2.900e-13 Identity = 65/205 (31.71%), Postives = 103/205 (50.24%), Query Frame = 1
Query: 1 AFLCAAVEIQRVLRGCMTRKQTREMVVSLASTSLVPLQAHIRGVLLRSRVAKKWAILLDQQAVEIQRVFRG-YRSRGAVQTVLK----------EKERAQSAQLQGWASLVIQRQARVWLARRAVDLKRVHVGLTSKVSEFADRLASSDDSRSVSAVFGQIDKDYRKYERIIGEMQAREDKMAATFVKKVLEKRDADIEGAWTRF 582
A AAVEIQR+ R +++K+ + +L + +Q HIR L ++W +D+ YR+ +Q + E ERA+ AQL+ A+++IQ R LA+ AV KR+ + L ++ +F D+ D + +ID+DYR+YE + ++ RED MAATFV KV R+ + E AWT +
Sbjct: 186 ARFAAAVEIQRISRSLLSKKEMQRRHHALCHAMAIRIQTHIRRKLACIEYQRRWKKYIDEXXXXXXXXXXSLYRNWKMIQIAKRIADELRRQREEMERAKIAQLRSNAAILIQSWIRRHLAKWAVHDKRIEIRLNYRLLKFLDQFMIDGD---LWQFLKRIDEDYRRYEDTMLDILEREDVMAATFVSKVTRLRENEHESAWTAY 387 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1477.3461.1 >prot_L-elsbetiae_contig1477.3461.1 ID=prot_L-elsbetiae_contig1477.3461.1|Name=mRNA_L-elsbetiae_contig1477.3461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1352bp MTRKQTREMVVSLASTSLVPLQAHIRGVLLRSRVAKKWAILLDQQAVEIQback to top mRNA from alignment at L-elsbetiae_contig1477:16168..25010- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1477.3461.1 ID=mRNA_L-elsbetiae_contig1477.3461.1|Name=mRNA_L-elsbetiae_contig1477.3461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8843bp|location=Sequence derived from alignment at L-elsbetiae_contig1477:16168..25010- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1477:16168..25010- >mRNA_L-elsbetiae_contig1477.3461.1 ID=mRNA_L-elsbetiae_contig1477.3461.1|Name=mRNA_L-elsbetiae_contig1477.3461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8112bp|location=Sequence derived from alignment at L-elsbetiae_contig1477:16168..25010- (Laminarionema elsbetiae ELsaHSoW15)back to top |