mRNA_L-elsbetiae_contig1474.3447.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1474.3447.1
Unique NamemRNA_L-elsbetiae_contig1474.3447.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-17
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   28 WYRCQKYELHNAAKRGSTERTLALL-SQGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAE-GGH 279
            W R  + +LH AA  GS ER +ALL S+ S+ ID G   G TPLMLA   G +RVVR+LLNKGANV++ A+DG TALH S + GGH
Sbjct:   11 WPRGPQNDLHRAANDGSVERVVALLASRSSIAIDAGAEYGWTPLMLAAWRGSSRVVRILLNKGANVSVVAEDGHTALHFSTQDGGH 96          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: A0A6H5KEY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEY4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 9.850e-17
Identity = 46/78 (58.97%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   49 ELHNAAKRGSTERTLALLSQGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHL 282
            +LH A   G  E TLALLS GS+DIDQGT  G TPLM A  EGC RVVR+LL+ GA   + AD G  AL  +A GGHL
Sbjct:   75 QLHQAILGGLVELTLALLSSGSIDIDQGTPGGWTPLMYATNEGCVRVVRILLDNGAKTNLVADGGFDALSKAAIGGHL 152          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.470e-15
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    4 PPPPPRPEWYRCQKYELHNAAKRGSTERTLALLS-QGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTAL 255
            PPPPP   W R    ELH AA  GS ER LALLS +  +D++QG + G TPLMLA T G  RVVR+LLN GAN++I  D G  AL
Sbjct:    2 PPPPPTQGWPRGPMNELHLAAMDGSAERALALLSSRDPIDVNQGDSAGCTPLMLATTNGHPRVVRILLNHGANMSIMDDVGSDAL 86          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.410e-15
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   49 ELHNAAKRGSTERTLALLSQGSVDIDQGTNR-GLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHLA 285
            +L++AA  GS ERT+A+LSQGSVDID G    G TPLM A T G  RVVRVLL  GA V++A +DG TALH S    HLA
Sbjct:    7 KLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLA 86          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 8.520e-15
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   49 ELHNAAKRGSTERTLALLSQGSVDIDQGTNR-GLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHLA 285
            +L++AA  GS ERT+A+LSQGSV+ID G    G TPLM A T G  RVVRVLL  GA V++A +DG TALH S    HLA
Sbjct:    7 KLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLA 86          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: Q8QN90_ESV1K (EsV-1-199 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN90_ESV1K)

HSP 1 Score: 77.8 bits (190), Expect = 4.930e-14
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   52 LHNAAKRGSTERTLALLSQGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHL 282
            LH+AA  GS E+   ++S GSV I+QG+  G TPLMLA   G +R+V  LLNKGA   I  D+G TALH SA+ GH+
Sbjct:   16 LHSAANHGSFEQVFGIVSSGSVQINQGSPEGWTPLMLAADGGYSRIVSFLLNKGAIARIMGDEGVTALHVSAKNGHV 92          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.460e-14
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   49 ELHNAAKRGSTERTLALLSQGSVDIDQGTNR-GLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHLA 285
            +L++A   GS ERT+A+LSQGSVDID G    G TPLM A T G  RVVRVLL  GA V++A +DG TALH S    HLA
Sbjct:    7 KLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLA 86          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: D8LPL4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL4_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.450e-13
Identity = 40/77 (51.95%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   52 LHNAAKRGSTERTLALLSQGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHL 282
            LH+AA  GS E+   ++S GSV I+QG+  G TPLMLA   G +R+V  LL+KGA   I  D+G TALH SA  GH+
Sbjct:   16 LHSAANDGSFEQVFGIVSSGSVQINQGSPEGWTPLMLAADGGYSRIVSFLLHKGAIAGIMGDEGVTALHVSARNGHV 92          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.160e-12
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   52 LHNAAKRGSTERTLALLSQGSVDIDQGTNRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALH 258
            LH+AA +GSTERT  LL+ GS DI+QGT    TPL+ A + G + V+ +LL+KGANV+I  D G TALH
Sbjct:    4 LHDAAFKGSTERTAELLATGSWDINQGTVNNWTPLIFAASMGHSSVLGILLSKGANVSIVTDTGVTALH 72          
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.740e-12
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   70 RGSTERTLALLSQGSVDIDQGT-NRGLTPLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHLA 285
            RGS ERT+ALLS+GSVDID    + G TPLM+A T G  RV RVLL  GA V++A +DG TALH S    HLA
Sbjct:    6 RGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLA 78          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1474.3447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JL33_9PHAE1.300e-1756.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEY4_9PHAE9.850e-1758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY91_ECTSI3.470e-1556.47EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
D7G2C8_ECTSI4.410e-1560.00EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G449_ECTSI8.520e-1558.75EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Q8QN90_ESV1K4.930e-1453.25EsV-1-199 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5JL58_9PHAE8.460e-1458.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPL4_ECTSI4.450e-1351.95EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI2.160e-1256.52EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K1W5_9PHAE8.740e-1260.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1474contigL-elsbetiae_contig1474:15182..15610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog2880.D8LNF8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.625641-CDS-L-elsbetiae_contig1474:15181..156101622815593.625641-CDS-L-elsbetiae_contig1474:15181..15610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1474 15182..15610 -
1691682979.4176276-CDS-L-elsbetiae_contig1474:15181..156101691682979.4176276-CDS-L-elsbetiae_contig1474:15181..15610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1474 15182..15610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1474.3447.1prot_L-elsbetiae_contig1474.3447.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1474 15182..15610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1474.3447.1

>prot_L-elsbetiae_contig1474.3447.1 ID=prot_L-elsbetiae_contig1474.3447.1|Name=mRNA_L-elsbetiae_contig1474.3447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
PPPPPPRPEWYRCQKYELHNAAKRGSTERTLALLSQGSVDIDQGTNRGLT
PLMLAVTEGCARVVRVLLNKGANVAIAADDGRTALHGSAEGGHLATTKML
VQAGADLEAADCEGITPLHMAASQGHSRIMTVLIEAGANPDSR
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mRNA from alignment at L-elsbetiae_contig1474:15182..15610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1474.3447.1 ID=mRNA_L-elsbetiae_contig1474.3447.1|Name=mRNA_L-elsbetiae_contig1474.3447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=429bp|location=Sequence derived from alignment at L-elsbetiae_contig1474:15182..15610- (Laminarionema elsbetiae ELsaHSoW15)
CCCCCGCCGCCACCTCCTCGACCTGAATGGTATCGGTGCCAAAAATATGA ACTGCACAACGCCGCGAAGAGAGGCTCAACGGAGCGCACCCTGGCGCTGC TCTCGCAGGGGTCGGTCGATATCGACCAAGGCACGAACAGGGGCCTCACC CCGTTGATGCTGGCGGTCACGGAGGGATGCGCTCGTGTGGTGAGGGTCCT GCTGAACAAGGGAGCCAACGTGGCCATCGCAGCCGATGATGGTCGTACCG CCCTTCACGGTTCCGCCGAAGGAGGGCACCTCGCCACGACCAAGATGCTG GTGCAGGCCGGTGCAGATCTCGAAGCAGCCGATTGCGAAGGCATCACGCC GCTTCACATGGCCGCTTCACAGGGTCACTCGAGGATCATGACGGTGCTGA TCGAAGCAGGCGCGAATCCCGATAGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1474:15182..15610-

>mRNA_L-elsbetiae_contig1474.3447.1 ID=mRNA_L-elsbetiae_contig1474.3447.1|Name=mRNA_L-elsbetiae_contig1474.3447.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig1474:15182..15610- (Laminarionema elsbetiae ELsaHSoW15)
CCCCCGCCGCCACCTCCTCGACCTGAATGGTATCGGTGCCAAAAATATGA
ACTGCACAACGCCGCGAAGAGAGGCTCAACGGAGCGCACCCTGGCGCTGC
TCTCGCAGGGGTCGGTCGATATCGACCAAGGCACGAACAGGGGCCTCACC
CCGTTGATGCTGGCGGTCACGGAGGGATGCGCTCGTGTGGTGAGGGTCCT
GCTGAACAAGGGAGCCAACGTGGCCATCGCAGCCGATGATGGTCGTACCG
CCCTTCACGGTTCCGCCGAAGGAGGGCACCTCGCCACGACCAAGATGCTG
GTGCAGGCCGGTGCAGATCTCGAAGCAGCCGATTGCGAAGGCATCACGCC
GCTTCACATGGCCGCTTCACAGGGTCACTCGAGGATCATGACGGTGCTGA
TCGAAGCAGGCGCGAATCCCGATAGCCGCCCCCCGCCGCCACCTCCTCGA
CCTGAATGGTATCGGTGCCAAAAATATGAACTGCACAACGCCGCGAAGAG
AGGCTCAACGGAGCGCACCCTGGCGCTGCTCTCGCAGGGGTCGGTCGATA
TCGACCAAGGCACGAACAGGGGCCTCACCCCGTTGATGCTGGCGGTCACG
GAGGGATGCGCTCGTGTGGTGAGGGTCCTGCTGAACAAGGGAGCCAACGT
GGCCATCGCAGCCGATGATGGTCGTACCGCCCTTCACGGTTCCGCCGAAG
GAGGGCACCTCGCCACGACCAAGATGCTGGTGCAGGCCGGTGCAGATCTC
GAAGCAGCCGATTGCGAAGGCATCACGCCGCTTCACATGGCCGCTTCACA
GGGTCACTCGAGGATCATGACGGTGCTGATCGAAGCAGGCGCGAATCCCG
ATAGCCGC
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