mRNA_L-elsbetiae_contig14733.3443.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14733.3443.1
Unique NamemRNA_L-elsbetiae_contig14733.3443.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14733.3443.1 vs. uniprot
Match: D8LTR1_ECTSI (Kinesin light chain-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.580e-14
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 AVGRAEAELGEEHPKVATLLFLLSRMVQERGVYDEAEELCTRALNIYEA 147
            A+ RAE E+G EHP+VATLLFLLSR+VQERG Y EAEELCTRAL+IYEA
Sbjct:  312 ALVRAEGEVGGEHPRVATLLFLLSRIVQERGDYTEAEELCTRALSIYEA 360
[Close]
BLAST of mRNA_L-elsbetiae_contig14733.3443.1 vs. uniprot
Match: A0A431L2N7_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A431L2N7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.900e-5
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   10 RAEAELGEEHPKVATLLFLLSRMVQERGVYDEAEELCTRALNIYEAALGPEHPDVGVALNCLAMSWQA 213
            RA     +  P++A+ L L S ++ + G   EA+ +C R L  YE+ L P H D+GV  N LAM + A
Sbjct:  289 RATETFDQLDPRIASTLELYSEVLWKNGKLAEAQPVCERTLQFYESTLPPNHQDIGVIANNLAMLYHA 356
[Close]
BLAST of mRNA_L-elsbetiae_contig14733.3443.1 vs. uniprot
Match: A0A431L0X8_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A431L0X8_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 7.020e-5
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   34 EHPKVATLLFLLSRMVQERGVYDEAEELCTRALNIYEAALGPEHPDVGVALNCLAM 201
            + P+++  L  L+ +  ++  YD+AE LC R L I+E+ LGP+H DV VA N LAM
Sbjct:  306 DDPRLSLTLESLAEVYWKQLKYDKAEPLCKRLLQIWESVLGPDHADVAVAANNLAM 361
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14733.3443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTR1_ECTSI1.580e-1479.59Kinesin light chain-like protein n=2 Tax=Ectocarpu... [more]
A0A431L2N7_9BACT3.900e-538.24Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A431L0X8_9BACT7.020e-544.64Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14733contigL-elsbetiae_contig14733:180..955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LTR1
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsCOG0457@1,KOG1839@1,KOG1839@2759,KOG1840@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-28_003150.1
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.2091184-CDS-L-elsbetiae_contig14733:179..3371622815593.2091184-CDS-L-elsbetiae_contig14733:179..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 180..337 -
1691682979.1585503-CDS-L-elsbetiae_contig14733:179..3371691682979.1585503-CDS-L-elsbetiae_contig14733:179..337Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 180..337 -
1622815593.2208052-CDS-L-elsbetiae_contig14733:723..9551622815593.2208052-CDS-L-elsbetiae_contig14733:723..955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 724..955 -
1691682979.1779673-CDS-L-elsbetiae_contig14733:723..9551691682979.1779673-CDS-L-elsbetiae_contig14733:723..955Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14733 724..955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14733.3443.1prot_L-elsbetiae_contig14733.3443.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14733 180..955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14733.3443.1

>prot_L-elsbetiae_contig14733.3443.1 ID=prot_L-elsbetiae_contig14733.3443.1|Name=mRNA_L-elsbetiae_contig14733.3443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
AVGRAEAELGEEHPKVATLLFLLSRMVQERGVYDEAEELCTRALNIYEAA
LGPEHPDVGVALNCLAMSWQAQASGGGSEAEPLHHRALAIAQIASGPGHP
TAAYSLHGLAVLAQARGERSALCAAYMRLI
back to top

mRNA from alignment at L-elsbetiae_contig14733:180..955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14733.3443.1 ID=mRNA_L-elsbetiae_contig14733.3443.1|Name=mRNA_L-elsbetiae_contig14733.3443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=776bp|location=Sequence derived from alignment at L-elsbetiae_contig14733:180..955- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGGGAGAGCGGAGGCGGAGCTGGGGGAGGAGCACCCGAAGGTCGC
GACGCTCCTGTTCCTGCTGTCGAGGATGGTGCAGGAGAGGGGGGTCTACG
ACGAGGCAGAGGAGCTGTGCACCAGAGCGCTGAACATCTACGAGGCAGCG
CTGGGGCCCGAGCACCCGGACGTCGGGGTGGCTCTGAACTGCCTCGCCAT
GTCGTGGCAGGCGCAGGCGAGCGGGGGAGGATGTGCGCGCTCTTTGTTTT
GTCGTGGTTGGGGGAGGCGATAAAAAGGGGTCTGCTGTGTTGTGTGGGGG
GAGTGGTGTGCGTCTGATACAGGCTCTGGATGGGGCGTATTTATATTCGG
AGAAAGAAAAACAGCATTTTATGTTCTTGGCACCTAGTCGCCCTGAGAGA
GAGTGACGGACCCCCCTCGAGGAAAGCATTGGTCTTGCCGCGGTCATGCC
AGCAATGGCGCCGCCGCCACCGCCGCCGCCGCCGCCGCAGTCGCCGCCAC
CACCACAATTACCACACCACTCACAAAATAGGGTTCAGACGCCCCCCCCC
GCGCCCAACAAACACCCTAAAAAATCGCCCCATGTGCTCGTGATCGGTGC
GTGCGCAGGGGAAGCTAGCAGAGGCGGAGCCACTGCACCACAGGGCCCTC
GCGATCGCGCAGATCGCCAGCGGGCCCGGGCACCCCACGGCCGCCTACAG
CCTCCACGGACTTGCGGTATTGGCGCAAGCTAGAGGTGAGCGTAGTGCAC
TGTGTGCTGCTTACATGCGCTTGATA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14733:180..955-

>mRNA_L-elsbetiae_contig14733.3443.1 ID=mRNA_L-elsbetiae_contig14733.3443.1|Name=mRNA_L-elsbetiae_contig14733.3443.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig14733:180..955- (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCGGGAGAGCGGAGGCGGAGCTGGGGGAGGAGCACCCGAAGGTCGC
GACGCTCCTGTTCCTGCTGTCGAGGATGGTGCAGGAGAGGGGGGTCTACG
ACGAGGCAGAGGAGCTGTGCACCAGAGCGCTGAACATCTACGAGGCAGCG
CTGGGGCCCGAGCACCCGGACGTCGGGGTGGCTCTGAACTGCCTCGCCAT
GTCGTGGCAGGCGCAGGCGAGCGGGGGAGGATGCCGTCGGGAGAGCGGAG
GCGGAGCTGGGGGAGGAGCACCCGAAGGTCGCGACGCTCCTGTTCCTGCT
GTCGAGGATGGTGCAGGAGAGGGGGGTCTACGACGAGGCAGAGGAGCTGT
GCACCAGAGCGCTGAACATCTACGAGGCAGCGCTGGGGCCCGAGCACCCG
GACGTCGGGGTGGCTCTGAACTGCCTCGCCATGTCGTGGCAGGCGCAGGC
GAGCGGGGGAGGATCAGAGGCGGAGCCACTGCACCACAGGGCCCTCGCGA
TCGCGCAGATCGCCAGCGGGCCCGGGCACCCCACGGCCGCCTACAGCCTC
CACGGACTTGCGGTATTGGCGCAAGCTAGAGGTGAGCGTAGTGCACTGTG
TGCTGCTTACATGCGCTTGATACAGAGGCGGAGCCACTGCACCACAGGGC
CCTCGCGATCGCGCAGATCGCCAGCGGGCCCGGGCACCCCACGGCCGCCT
ACAGCCTCCACGGACTTGCGGTATTGGCGCAAGCTAGAGGTGAGCGTAGT
GCACTGTGTGCTGCTTACATGCGCTTGATA
back to top