mRNA_L-elsbetiae_contig14730.3442.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14730.3442.1
Unique NamemRNA_L-elsbetiae_contig14730.3442.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14730.3442.1 vs. uniprot
Match: A0A6H5L2W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W2_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.030e-50
Identity = 86/111 (77.48%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 QEYRECAHPDATASASTKEAAQRMRNSNCYSSTCLVSDHSAPASESVGVQVLLLSMLLEGWFPTMFAHDQDVGLGLLVRQMTDNAWECLDRAHVSKNLAKAFVKLLPGFSP 333
            Q+++E AHP ATASAS +EAAQR+RNSNCYS TCL S HSAP +ESVGVQVLLL+ LLEGW PTMFAHDQDVGLGLLVRQ+T++AWECLDR+HV KNL KA VK LPGF+P
Sbjct:  759 QDFKERAHPPATASASVREAAQRLRNSNCYSGTCLTSPHSAPGTESVGVQVLLLTQLLEGWLPTMFAHDQDVGLGLLVRQVTNDAWECLDRSHVQKNLVKAIVKFLPGFAP 869
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BLAST of mRNA_L-elsbetiae_contig14730.3442.1 vs. uniprot
Match: A0A6H5JHR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.620e-25
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:   52 KEAAQRMRNSNCYSSTCLVSDHSAPASESVGVQVLLLSMLLEGWFPTMFAHDQDVGLGLLVRQMTDNAWECLDRAHVSKNLAKAFVKLLPGFS 330
            ++AA+R+R+ NCYSSTCL S  SAPA+E +G+ +L L ++ EG++   FAHDQD G+G +VR + D+A ECLDRAH+ KN+ KA VK   G++
Sbjct:  162 EDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYA 254
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BLAST of mRNA_L-elsbetiae_contig14730.3442.1 vs. uniprot
Match: A0A6H5JU55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU55_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.500e-25
Identity = 49/93 (52.69%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:   52 KEAAQRMRNSNCYSSTCLVSDHSAPASESVGVQVLLLSMLLEGWFPTMFAHDQDVGLGLLVRQMTDNAWECLDRAHVSKNLAKAFVKLLPGFS 330
            ++AA+R+R+ NCYSSTCL S  SAPA+E +G+ +L L ++ EG++   FAHDQD G+G +VR + D+A ECLDRAH+ KN+ KA VK   G++
Sbjct:  829 EDAAKRLRHGNCYSSTCLRSPLSAPATEPLGIMILCLRLMYEGFWVNAFAHDQDAGIGHIVRGLFDDALECLDRAHIQKNMKKAIVKFASGYA 921
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14730.3442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2W2_9PHAE2.030e-5077.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHR1_9PHAE3.620e-2552.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU55_9PHAE4.500e-2552.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14730contigL-elsbetiae_contig14730:3309..3796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size335
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.1488323-CDS-L-elsbetiae_contig14730:3308..35931622815593.1488323-CDS-L-elsbetiae_contig14730:3308..3593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14730 3309..3593 +
1691682979.1380556-CDS-L-elsbetiae_contig14730:3308..35931691682979.1380556-CDS-L-elsbetiae_contig14730:3308..3593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14730 3309..3593 +
1622815593.1639175-CDS-L-elsbetiae_contig14730:3748..37961622815593.1639175-CDS-L-elsbetiae_contig14730:3748..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14730 3749..3796 +
1691682979.147627-CDS-L-elsbetiae_contig14730:3748..37961691682979.147627-CDS-L-elsbetiae_contig14730:3748..3796Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14730 3749..3796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14730.3442.1prot_L-elsbetiae_contig14730.3442.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14730 3309..3796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14730.3442.1

>prot_L-elsbetiae_contig14730.3442.1 ID=prot_L-elsbetiae_contig14730.3442.1|Name=mRNA_L-elsbetiae_contig14730.3442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
QEYRECAHPDATASASTKEAAQRMRNSNCYSSTCLVSDHSAPASESVGVQ
VLLLSMLLEGWFPTMFAHDQDVGLGLLVRQMTDNAWECLDRAHVSKNLAK
AFVKLLPGFSP
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mRNA from alignment at L-elsbetiae_contig14730:3309..3796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14730.3442.1 ID=mRNA_L-elsbetiae_contig14730.3442.1|Name=mRNA_L-elsbetiae_contig14730.3442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=488bp|location=Sequence derived from alignment at L-elsbetiae_contig14730:3309..3796+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAATACCGGGAGTGCGCACACCCTGATGCGACTGCCTCAGCATCTAC
GAAAGAGGCTGCCCAGAGAATGCGCAACTCCAACTGCTACTCGAGTACGT
GCCTCGTCAGCGACCACAGCGCCCCCGCTTCTGAATCTGTGGGAGTGCAG
GTGCTGTTACTTTCGATGCTGCTCGAGGGTTGGTTCCCTACGATGTTCGC
GCACGATCAGGACGTAGGACTGGGGCTATTGGTGCGACAGATGACGGACA
ACGCCTGGGAGTGCCTGGACCGCGCGCATGTCAGTGTACGTCATGTGTTT
CCATTTGATTTAGCGGTATCGTCTGTGCACAACTGCACGAACTGTACATT
AGATTTGTGTCCGGATGTGAGTAAACAGACCAAACAGACCAAACAACCTC
ATGCAACACCTATTTCGCCTGCATACTTATGGACAAACAGAAGAACCTGG
CGAAGGCCTTCGTCAAGTTGTTGCCTGGATTCTCCCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14730:3309..3796+

>mRNA_L-elsbetiae_contig14730.3442.1 ID=mRNA_L-elsbetiae_contig14730.3442.1|Name=mRNA_L-elsbetiae_contig14730.3442.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig14730:3309..3796+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAATACCGGGAGTGCGCACACCCTGATGCGACTGCCTCAGCATCTAC
GAAAGAGGCTGCCCAGAGAATGCGCAACTCCAACTGCTACTCGAGTACGT
GCCTCGTCAGCGACCACAGCGCCCCCGCTTCTGAATCTGTGGGAGTGCAG
GTGCTGTTACTTTCGATGCTGCTCGAGGGTTGGTTCCCTACGATGTTCGC
GCACGATCAGGACGTAGGACTGGGGCTATTGGTGCGACAGATGACGGACA
ACGCCTGGGAGTGCCTGGACCGCGCGCATGTCAGTCAGGAATACCGGGAG
TGCGCACACCCTGATGCGACTGCCTCAGCATCTACGAAAGAGGCTGCCCA
GAGAATGCGCAACTCCAACTGCTACTCGAGTACGTGCCTCGTCAGCGACC
ACAGCGCCCCCGCTTCTGAATCTGTGGGAGTGCAGGTGCTGTTACTTTCG
ATGCTGCTCGAGGGTTGGTTCCCTACGATGTTCGCGCACGATCAGGACGT
AGGACTGGGGCTATTGGTGCGACAGATGACGGACAACGCCTGGGAGTGCC
TGGACCGCGCGCATGTCAGTAAGAACCTGGCGAAGGCCTTCGTCAAGTTG
TTGCCTGGATTCTCCCCCAAGAACCTGGCGAAGGCCTTCGTCAAGTTGTT
GCCTGGATTCTCCCCC
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