mRNA_L-elsbetiae_contig1473.3438.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1473.3438.1
Unique NamemRNA_L-elsbetiae_contig1473.3438.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 9.470e-45
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGPV 285
            QVPDA AVEF VDGRWTPVSSVIRDTAWLNL  SGSGHERLDADG+VVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLV PV
Sbjct:  215 QVPDASAVEFRVDGRWTPVSSVIRDTAWLNL--SGSGHERLDADGEVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVAPV 302
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUL1_9PHAE (Malate dehydrogenase n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A097IUL1_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 3.000e-36
Identity = 72/91 (79.12%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGPVA 288
            QVPDA AVEF VDGRWTP +SVIRD AWL L  S + HER DADG+ VLGL EAVRGRGAAVLGARKLSSAMSAANAIA HL+DWLV P A
Sbjct:  224 QVPDASAVEFFVDGRWTPAASVIRDAAWLTL--SSNAHERFDADGEAVLGLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWLVRPSA 312
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUP1_9PHAE (Malate dehydrogenase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUP1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 4.530e-35
Identity = 71/91 (78.02%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGPVA 288
            QVPDA AVEF VDGRWTP +SVIRD AWL L  S + HE  DADG+ VLGL E VRGRGAAVLGARKLSSAMSAANAIASHL DWLV P A
Sbjct:  222 QVPDASAVEFLVDGRWTPAASVIRDAAWLTL--SSNSHESFDADGEPVLGLAEGVRGRGAAVLGARKLSSAMSAANAIASHLKDWLVQPEA 310
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A6H5KVV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 7.720e-35
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGPV 285
            QVPDA AVEF V+G WTP  +VIRD +WLNL  S S HER DA+G VVLGL EAVRGRGAAVLGARKLSSAMSAANAIASHLADWLV P+
Sbjct:  216 QVPDASAVEFRVNGCWTPAPAVIRDASWLNL--SNSSHERFDAEGGVVLGLAEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVPPL 303
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO)

HSP 1 Score: 125 bits (314), Expect = 3.210e-32
Identity = 67/89 (75.28%), Postives = 71/89 (79.78%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGP 282
            QVPDA AVEF VD RW P +SVIRD AWL L  S + H R DADG+ VLGL EAVRGRGAAVL ARKLSSAMSAANAIA HL+DWLV P
Sbjct:  222 QVPDASAVEFFVDDRWIPAASVIRDAAWLTL--SSNSHGRFDADGEAVLGLAEAVRGRGAAVLDARKLSSAMSAANAIAGHLSDWLVRP 308
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUN1_9PHAE (Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUN1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 4.210e-24
Identity = 60/88 (68.18%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGS--GSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 273
            QVPD  AVEF VDGRW P+ SVI DT WL L  S  G G     A+GQ    L EAVR RGAAVLGARKLSSAMSAANAIA HL+DWL
Sbjct:  208 QVPDVSAVEFFVDGRWVPIESVIPDTTWLGLANSLPGGGSIGGGAEGQ---SLVEAVRKRGAAVLGARKLSSAMSAANAIAEHLSDWL 292
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA)

HSP 1 Score: 101 bits (251), Expect = 2.620e-23
Identity = 58/86 (67.44%), Postives = 65/86 (75.58%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWL 273
            QVPDA AVEF +DG W P  SVI D+ WL+L  S     R+  +G+V  GL EAVRGRGAAVLGARKLSSAMSAANAIA HL+DWL
Sbjct:  212 QVPDASAVEFLIDGSWVPAVSVIGDSGWLDLSTSTPQGGRV-LEGEVS-GLAEAVRGRGAAVLGARKLSSAMSAANAIAGHLSDWL 295
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.770e-18
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNL------GGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGP 282
            QVPDA +VEFC++G W P  +++ D+ WL L       G+G G             L+EAVR RGA +L ARKLSSAMSAANA A+HL DWL  P
Sbjct:  207 QVPDASSVEFCLNGNWVPAQTILGDSPWLKLQDANAVAGAGGGDY-----------LSEAVRNRGAVILAARKLSSAMSAANATAAHLGDWLCSP 290
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: A0A097IUM7_UNDPI (Malate dehydrogenase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUM7_UNDPI)

HSP 1 Score: 76.6 bits (187), Expect = 2.470e-14
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLV 276
            QVPD  + E  +   W P     RD   L L     G      +G+V   LT+AVRGRGAAVL ARKLSSAMSAANAIA HL+DWLV
Sbjct:  217 QVPDVSSAELFIGNMWVPAVFAFRDAHLLGLNAPRPGSAPT-GEGEVC-SLTKAVRGRGAAVLEARKLSSAMSAANAIAGHLSDWLV 301
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BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Match: D7FQW1_ECTSI (Malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.430e-11
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   16 QVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADGQVVLG 165
            QVPDA AVEF V+G WTP  +VIRD +WLNL  S S HER DA+G VVLG
Sbjct:  216 QVPDASAVEFRVNGCWTPAPAVIRDASWLNL--SNSSHERFDAEGGVVLG 263
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1473.3438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A097IUM0_9PHAE9.470e-4593.33Malate dehydrogenase n=1 Tax=Punctaria latifolia T... [more]
A0A097IUL1_9PHAE3.000e-3679.12Malate dehydrogenase n=1 Tax=Scytosiphon dotyi Tax... [more]
A0A097IUP1_9PHAE4.530e-3578.02Malate dehydrogenase n=1 Tax=Colpomenia sinuosa Ta... [more]
A0A6H5KVV0_9PHAE7.720e-3578.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A097IUJ7_SCYLO3.210e-3275.28Malate dehydrogenase n=1 Tax=Scytosiphon lomentari... [more]
A0A097IUN1_9PHAE4.210e-2468.18Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 ... [more]
A0A097IUP6_SACJA2.620e-2367.44Malate dehydrogenase n=2 Tax=Saccharina TaxID=3093... [more]
A0A097IUK3_9PHAE1.770e-1850.53Malate dehydrogenase n=1 Tax=Dictyopteris undulata... [more]
A0A097IUM7_UNDPI2.470e-1454.02Malate dehydrogenase n=1 Tax=Undaria pinnatifida T... [more]
D7FQW1_ECTSI1.430e-1168.00Malate dehydrogenase n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1473contigL-elsbetiae_contig1473:4551..6678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog2880.D7FQW1
KEGG rclassRC00031
KEGG koko:K00025,ko:K00026
KEGG ReactionR00342,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00710,map01100,map01110,map01120,map01130,map01200,map04964
KEGG ModuleM00009,M00011,M00012,M00168,M00171
Hectar predicted targeting categoryother localisation
EggNOG free text desc.malate metabolic process
EggNOG OGsCOG0039@1,KOG1496@2759
EC1.1.1.37
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.887233-CDS-L-elsbetiae_contig1473:4550..47131622815592.887233-CDS-L-elsbetiae_contig1473:4550..4713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 4551..4713 +
1691682978.999284-CDS-L-elsbetiae_contig1473:4550..47131691682978.999284-CDS-L-elsbetiae_contig1473:4550..4713Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 4551..4713 +
1622815592.901907-CDS-L-elsbetiae_contig1473:6553..66781622815592.901907-CDS-L-elsbetiae_contig1473:6553..6678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 6554..6678 +
1691682979.0108001-CDS-L-elsbetiae_contig1473:6553..66781691682979.0108001-CDS-L-elsbetiae_contig1473:6553..6678Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1473 6554..6678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1473.3438.1prot_L-elsbetiae_contig1473.3438.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1473 4551..6678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1473.3438.1

>prot_L-elsbetiae_contig1473.3438.1 ID=prot_L-elsbetiae_contig1473.3438.1|Name=mRNA_L-elsbetiae_contig1473.3438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MYLVGQVPDAGAVEFCVDGRWTPVSSVIRDTAWLNLGGSGSGHERLDADG
QVVLGLTEAVRGRGAAVLGARKLSSAMSAANAIASHLADWLVGPVA
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mRNA from alignment at L-elsbetiae_contig1473:4551..6678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1473.3438.1 ID=mRNA_L-elsbetiae_contig1473.3438.1|Name=mRNA_L-elsbetiae_contig1473.3438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2128bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:4551..6678+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTTGTTGGCCAGGTGCCCGACGCCGGCGCTGTAGAGTTTTGCGT
GGACGGCCGGTGGACACCGGTCTCCTCCGTCATCCGCGACACGGCCTGGC
TTAACCTCGGCGGCAGCGGCAGCGGCCACGAGCGGCTCGACGCCGACGGC
CAGGTTGTGCTAGGTGAGACCGCAGCAGTATAATACTATAGACGGCCTTA
GGGTTTGTAGGTTACCCTGGGCTGGCTGCTTCTTTCGTGTTTGTTAGGTG
AGACCGCAGTATTATTTCGACTTCATTGTTGACGAGGGTGGGGAGTGCTG
AACCCTGCTCGCGATAAAAACATCTAAGGCGGGCACCGCAGGAGGGGGTC
CAACCCCCCCTACTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGT
GGAGGAAGGGGGCCAGTGGGGCAGACGACAAATATGCCAATAATGGGCGG
ATAAATAAAAATAAAAATAAACTAAAGATGGCCTAGAAGGTTTGTAGGTT
ACCCTGGGCTTGCTTTTGTTTTTAGCTAGTATTGTCTCCACACTCACAAG
GGTGGATGGATGTACATAGATCTGTAGAGGCGACTGTTGTTGTTGTTGTT
GTTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCTATCTAGTACATC
CGTACTAATCCAACACTTGATGCGGTCAATTCCCGTGGTCACAGGATAAC
TTACACCTAAAAAAAGGTGGACTACACGAAAATAAAAATGGACCCGAAGG
GTCAGCACGCGATAAAAATTAAAGACAAATAGTGTGGAGCCCCTCGCTCC
CCTCTACACGCTATGCGAGGTAAAAAACAAACTGAACAAGCCAACATCAC
CAACCGGGAGGTATACACCCCCTGGTTCTATCTTGGTACCCTAACAATGC
CAGGATGAATGAGCGTGGAAATAAAGGGTATGCAAATAGGTTAACTTGTT
GGTAAGTATATCCGTAAGAAGGAAAAGAAAAAAATAGGCTTTGACTCCGT
TGGCACCTTTTTATGAAGGTACGCTTTATTCCTCTGCAACTTAGAACAAA
ACTCAGTACATGCCATGAGAACAGTACTTGTTCCCCCGCAATTTCACCAA
ACGCCAAAGGAGTTCGAGCCTATTTAGGCGAAGAACGCGCAAGCGCTTTT
GTGAAGAACCTCCCTGTTCTTGAGCGAGGCTGAGGCATTTCCGCCGTGGG
CTGTAACCCTGCCACCTACGGGGGTTTCGAGCTCAATGTAAAGGAATGCT
TTCTATTTATTTACCGTAGGTGACACAAGATATCACACCCCCTGGACAAT
TTTTCAAAGCTCGGTTCCTCCCCAGCAGGAAGAGTGTCATGCCAAAAGAG
GGTGGCGTTGGAAAGATCTAGTCGAGGGCTGCCCAAAAATGTGTCGTTTG
GTGCTGGCACCCTCTTCGTTACGGAGTAGTGGAGCTCTAAAAGTCGGTCC
AGGGTGTGTGGTATCTTGTGTCACCTACGGTGGGGTACAGTACGTAATGG
AAACTTCGAGCCTGAATTTTTTGACTCCCATATGTTCTTACGGTTCAGGG
TGGGCATTTTGCCGGGCACCATACCCTGAACCAGTTTCGGACCCAGATCG
AACCGGTTTTAGAACCGGCAGTATTCTGGAGGGATAAGTGCTCTCGTCGG
CGTTTCGGGAAAGCAACAGAAATCTAACGAAAAACGTAGGTATTTGCCAG
CCACCGTCGATGACACAAGATAGCACACCCCCTGGACAGATTTTCAAAGC
TCGATTCCTCCCCAGCAAGAAGAGTGCCAGCGCCGAAAGGGGGTGGCGTT
GGAAAGATGTAGTCGAGGGCTGTTCGGAAATGGTGTCGTTTTGTGCTGGC
ACCCTCTTTGTTACGGAGTACCATGGTATTCGATAGAGCTCTAAAACTCA
GTCCAGGGGGTGTGGTATCTGGTGTCACCTACGTACGGAGTGTGCTCCCG
AAGACTTGATTGCTGCAACCGTCCTCTCTCTCTCTTTTTTCCTGCACGAA
AAGGCCTGACAGAAGCGGTGCGAGGACGGGGCGCCGCCGTGCTGGGGGCC
CGCAAGCTGAGCAGCGCCATGTCGGCCGCGAACGCGATCGCCAGCCACCT
CGCCGACTGGCTAGTTGGTCCTGTGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1473:4551..6678+

>mRNA_L-elsbetiae_contig1473.3438.1 ID=mRNA_L-elsbetiae_contig1473.3438.1|Name=mRNA_L-elsbetiae_contig1473.3438.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:4551..6678+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTTGTTGGCCAGGTGCCCGACGCCGGCGCTGTAGAGTTTTGCGT
GGACGGCCGGTGGACACCGGTCTCCTCCGTCATCCGCGACACGGCCTGGC
TTAACCTCGGCGGCAGCGGCAGCGGCCACGAGCGGCTCGACGCCGACGGC
CAGGTTGTGCTAGATGTACCTTGTTGGCCAGGTGCCCGACGCCGGCGCTG
TAGAGTTTTGCGTGGACGGCCGGTGGACACCGGTCTCCTCCGTCATCCGC
GACACGGCCTGGCTTAACCTCGGCGGCAGCGGCAGCGGCCACGAGCGGCT
CGACGCCGACGGCCAGGTTGTGCTAGGCCTGACAGAAGCGGTGCGAGGAC
GGGGCGCCGCCGTGCTGGGGGCCCGCAAGCTGAGCAGCGCCATGTCGGCC
GCGAACGCGATCGCCAGCCACCTCGCCGACTGGCTAGTTGGTCCTGTGGC
GGCCTGACAGAAGCGGTGCGAGGACGGGGCGCCGCCGTGCTGGGGGCCCG
CAAGCTGAGCAGCGCCATGTCGGCCGCGAACGCGATCGCCAGCCACCTCG
CCGACTGGCTAGTTGGTCCTGTGGCG
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