mRNA_L-elsbetiae_contig14728.3437.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14728.3437.1
Unique NamemRNA_L-elsbetiae_contig14728.3437.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14728.3437.1 vs. uniprot
Match: D8LIL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL4_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.970e-78
Identity = 116/138 (84.06%), Postives = 123/138 (89.13%), Query Frame = 1 
Query:    1 LAAKHAFDFSLNRSIVHGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDFPDARKIVNHATSQWPMFIFVVFIPQCMMAVSLIGTPWLCKGVSVPESVGGVFDADDTAAELHQAFPFQLKWPSFLDAGGQDGLTDRLQ 414
            LAAKHAFDFSLNRSI HGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDFPDARKIVNHATSQWPMFIF+VFIPQC+MA+SL+GTPWLCKGV+VPE VGGVF  D     + QAFPF LKW SFL+A  QDGL DRLQ
Sbjct:   95 LAAKHAFDFSLNRSIAHGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDFPDARKIVNHATSQWPMFIFIVFIPQCLMALSLVGTPWLCKGVAVPERVGGVFHRDPG---ISQAFPFHLKWQSFLEAARQDGLADRLQ 229
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BLAST of mRNA_L-elsbetiae_contig14728.3437.1 vs. uniprot
Match: A0A835YVP4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.900e-16
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 LAAKHAFDFSLNRSIVHGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDFPDA-RKIVNHATSQWP 195
            LAA+HA DFSL  S+V  FATFYV Y T RVF RFG  IG+IAWESLDDFP A R  + + TS++P
Sbjct:   26 LAARHALDFSLYVSLVRAFATFYVVYGTFRVFARFGSNIGLIAWESLDDFPHACRTPLLYLTSEYP 91
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BLAST of mRNA_L-elsbetiae_contig14728.3437.1 vs. uniprot
Match: A0A6H5KWB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWB8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.180e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:    1 LAAKHAFDFSLNRSIVHGFATFYVTYSTIR 90
            LAAKHAFDFSLNRSI HGFATFYVTYSTIR
Sbjct:   95 LAAKHAFDFSLNRSIAHGFATFYVTYSTIR 124
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14728.3437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIL4_ECTSI1.970e-7884.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YVP4_9STRA6.900e-1663.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KWB8_9PHAE3.180e-996.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14728contigL-elsbetiae_contig14728:342..2021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004290.1
Exons3
Model size416
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14728.3437.1prot_L-elsbetiae_contig14728.3437.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14728 344..2021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.8197634-CDS-L-elsbetiae_contig14728:343..4741622815592.8197634-CDS-L-elsbetiae_contig14728:343..474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 344..474 -
1691682978.9632466-CDS-L-elsbetiae_contig14728:343..4741691682978.9632466-CDS-L-elsbetiae_contig14728:343..474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 344..474 -
1622815592.8334568-CDS-L-elsbetiae_contig14728:1444..16381622815592.8334568-CDS-L-elsbetiae_contig14728:1444..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 1445..1638 -
1691682978.9736567-CDS-L-elsbetiae_contig14728:1444..16381691682978.9736567-CDS-L-elsbetiae_contig14728:1444..1638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 1445..1638 -
1622815592.8479877-CDS-L-elsbetiae_contig14728:1932..20211622815592.8479877-CDS-L-elsbetiae_contig14728:1932..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 1933..2021 -
1691682978.9838147-CDS-L-elsbetiae_contig14728:1932..20211691682978.9838147-CDS-L-elsbetiae_contig14728:1932..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14728 1933..2021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14728.3437.1

>prot_L-elsbetiae_contig14728.3437.1 ID=prot_L-elsbetiae_contig14728.3437.1|Name=mRNA_L-elsbetiae_contig14728.3437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
LAAKHAFDFSLNRSIVHGFATFYVTYSTIRVFVRFGQAIGVIAWESLDDF
PDARKIVNHATSQWPMFIFVVFIPQCMMAVSLIGTPWLCKGVSVPESVGG
VFDADDTAAELHQAFPFQLKWPSFLDAGGQDGLTDRLQ
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mRNA from alignment at L-elsbetiae_contig14728:342..2021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14728.3437.1 ID=mRNA_L-elsbetiae_contig14728.3437.1|Name=mRNA_L-elsbetiae_contig14728.3437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig14728:342..2021- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGGCGAAGCATGCGTTCGATTTTTCCCTCAACAGATCCATCGTGCA
CGGTTTCGCGACCTTTTATGTCACGTACTCCACCATCCGGTGAGGCCCTC
GGGCGAAATGATCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATG
CTGCTGCTGCCGCTGCTGGCGTGCTTGTTAGTATCGTCGTTGATTGTTTG
AGAGTAATGTGTTGCTGTTTCCACCGATGGTTTGGCGCTGTTCGTCGACC
CGTGTGTTGTCGCCGCCGACACCGCTCGCTCAGCAACGCCACGACACATC
ACGGTTCTCACCCAATCAAACACGCGTGCTTCTGCCCCCCCCCCCAACAC
GATGCCACCCCTCCCCGCGGATTAAAAACGAAGCGTCTTCGTCCGGTTCG
GCCAGGCGATCGGCGTGATCGCATGGGAGTCCCTCGACGACTTCCCGGAC
GCCCGCAAGATCGTCAACCACGCCACTTCCCAGTGGCCCATGTTCATCTT
CGTCGTCTTCATCCCGCAGTGCATGATGGCGGTTTCGCTGATCGGAACCC
CTTGGCTGTGCAAGGGCGTCTCAGTGCGTGAGTTCTGATTTGCTTCATTT
TTTGTTAGCCCCCCCCCCCCCCCCCCCCCCTCCCCTCCTGCTTTTGAGCC
CCCCCGAAAGGTTCATTCCCTCTCTCGGAAGTGGGGGAAAGTCAAAAAAC
GAGCTCNNNNNNNNNNGACGTATGCGGCGACCAGAAAGTACACAGCTTTC
TACCGCGCCGGCGCTCTTTTGTACTCAACAACTACGCGTCCCCCCCCCCC
CCCCCCCTATTCCTTTCGGATTTCGGACCCGACCGGCAGTTTCCATCTCA
TGCTTGATAGGTAGGAGAATTTAAGTAACGAGCTCCAGACGTTTTTTTAG
GAGTGTAACATCGACAGAATCTGTGGATACCGATTGCTCGTCTCCGAGGG
TAGTCATGCAGTGCGTCCTCTGGTTGATCAAGAGTTGGCTCTTAAGGAGA
ACACGTTTAAGAACCAACCGCTTTGTGTCCTCCCCCAAGCGGCTGCCGCG
GCTTCTAATAGGGTTGGTGTGGAGATCCAAGGCGGTGGGAGCGGGGGCGG
AGGCGGAGCGCGTTGTTGTTGCTTGCCTGTAGTCGCGCAATCTAAGCCTT
GCGAGAAAGGGTGTGACGGAAGGAGACAGTAGTATTTTGTTGCTTGCGTG
TGGGGTCGTTTGGCCGTTGATGACGCGTGGGGTTATTTCGAGGCTGCAGT
CAGCACCGTCCCTACCTACACCTTTTCATATTCCCGCCAAGTGAGCGCAC
AGCCAGTTGACAAGTTCTTTAACTGCTGGAGTGTTTGCTTGTGACTCCTG
GAAAGTGAGCATCACGCGCGATAAAGAGGAGACATGCCCACACCTTTGTT
TGTCGGCATATGGTATCTTTTTTTTGTCTCTATTTCTTTACTTTATATCG
GTCTCGAAGCCGGGCCTGCTGACCGGCTTACCCGTGTCTCTTTGGCTCTA
CGGCTGTCTCCTTCTCCCCCGCGTTTCCAAACGTGCCGTGTAAACAGCCG
AGAGCGTAGGGGGCGTGTTCGACGCGGATGACACTGCCGCCGAACTTCAC
CAGGCTTTCCCCTTTCAGCTCAAGTGGCCGAGCTTTTTGGACGCGGGAGG
CCAAGACGGGCTTACGGATCGCTTGCAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14728:342..2021-

>mRNA_L-elsbetiae_contig14728.3437.1 ID=mRNA_L-elsbetiae_contig14728.3437.1|Name=mRNA_L-elsbetiae_contig14728.3437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig14728:342..2021- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGGCGAAGCATGCGTTCGATTTTTCCCTCAACAGATCCATCGTGCA
CGGTTTCGCGACCTTTTATGTCACGTACTCCACCATCCGCTCGCGGCGAA
GCATGCGTTCGATTTTTCCCTCAACAGATCCATCGTGCACGGTTTCGCGA
CCTTTTATGTCACGTACTCCACCATCCGCGTCTTCGTCCGGTTCGGCCAG
GCGATCGGCGTGATCGCATGGGAGTCCCTCGACGACTTCCCGGACGCCCG
CAAGATCGTCAACCACGCCACTTCCCAGTGGCCCATGTTCATCTTCGTCG
TCTTCATCCCGCAGTGCATGATGGCGGTTTCGCTGATCGGAACCCCTTGG
CTGTGCAAGGGCGTCTCAGTGCCGTCTTCGTCCGGTTCGGCCAGGCGATC
GGCGTGATCGCATGGGAGTCCCTCGACGACTTCCCGGACGCCCGCAAGAT
CGTCAACCACGCCACTTCCCAGTGGCCCATGTTCATCTTCGTCGTCTTCA
TCCCGCAGTGCATGATGGCGGTTTCGCTGATCGGAACCCCTTGGCTGTGC
AAGGGCGTCTCAGTGCCCGAGAGCGTAGGGGGCGTGTTCGACGCGGATGA
CACTGCCGCCGAACTTCACCAGGCTTTCCCCTTTCAGCTCAAGTGGCCGA
GCTTTTTGGACGCGGGAGGCCAAGACGGGCTTACGGATCGCTTGCAGCCG
AGAGCGTAGGGGGCGTGTTCGACGCGGATGACACTGCCGCCGAACTTCAC
CAGGCTTTCCCCTTTCAGCTCAAGTGGCCGAGCTTTTTGGACGCGGGAGG
CCAAGACGGGCTTACGGATCGCTTGCAG
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