mRNA_L-elsbetiae_contig14725.3434.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14725.3434.1
Unique NamemRNA_L-elsbetiae_contig14725.3434.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14725.3434.1 vs. uniprot
Match: A0A6H5JH57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH57_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-5
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  133 HLSNLAVSADQRRQMEEDYRLALTMQRGGVAGAAGDRG 246
            HL N AV+AD+RRQMEEDYRLAL MQ+G  A A G  G
Sbjct:   28 HLRNFAVTADERRQMEEDYRLALAMQKGEAAAANGTGG 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14725.3434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH57_9PHAE1.680e-568.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14725contigL-elsbetiae_contig14725:132..652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size521
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14725.3434.1prot_L-elsbetiae_contig14725.3434.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14725 207..386 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.6188123-UTR-L-elsbetiae_contig14725:131..2061622815592.6188123-UTR-L-elsbetiae_contig14725:131..206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14725 132..206 +
1691682978.8524697-UTR-L-elsbetiae_contig14725:131..2061691682978.8524697-UTR-L-elsbetiae_contig14725:131..206Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14725 132..206 +
1622815592.6424613-UTR-L-elsbetiae_contig14725:386..6521622815592.6424613-UTR-L-elsbetiae_contig14725:386..652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14725 387..652 +
1691682978.8753493-UTR-L-elsbetiae_contig14725:386..6521691682978.8753493-UTR-L-elsbetiae_contig14725:386..652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14725 387..652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.6294377-CDS-L-elsbetiae_contig14725:206..3861622815592.6294377-CDS-L-elsbetiae_contig14725:206..386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14725 207..386 +
1691682978.861892-CDS-L-elsbetiae_contig14725:206..3861691682978.861892-CDS-L-elsbetiae_contig14725:206..386Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14725 207..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14725.3434.1

>prot_L-elsbetiae_contig14725.3434.1 ID=prot_L-elsbetiae_contig14725.3434.1|Name=mRNA_L-elsbetiae_contig14725.3434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MEMRGKEFTSPSSSRRRKYHLSNLAVSADQRRQMEEDYRLALTMQRGGVA
GAAGDRGEM*
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mRNA from alignment at L-elsbetiae_contig14725:132..652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14725.3434.1 ID=mRNA_L-elsbetiae_contig14725.3434.1|Name=mRNA_L-elsbetiae_contig14725.3434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=521bp|location=Sequence derived from alignment at L-elsbetiae_contig14725:132..652+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGAATTTAGAGATTTGTCGGGTCGTGCAATCAGCTTTTGTTTTCGTGG
CCCCCGGTAAGCAGCGGGGTGGGTGATGGAGATGCGGGGGAAGGAGTTCA
CTTCGCCTTCTTCCAGCCGCAGGCGAAAATACCACCTGAGCAACTTGGCC
GTGTCGGCCGACCAGCGGAGGCAGATGGAGGAGGACTACCGCCTGGCGCT
CACGATGCAGAGGGGTGGAGTAGCTGGTGCGGCTGGTGACCGAGGTGAGA
TGTAATCGTTTGTCGTGCGCTTCGTGGCCATCTCACCGTAAGACCTAGAC
CCTCCACGCTACAGTCGGTAGCATACTACCTAAGCGGTATTGTATTTCAA
GAAGCAGAGCAAGCCGTGATATATACCGGGGCTGTCTATTCTCGTCGCAT
GCAAGCTTGCGGCTGAGTTTTTTCATTTTCGAGTGCGTGAAAATGCGTGT
TGGCCTCCACCTCGCACCAACACCCTCCCCCTCCTTCCCTATCTTAACCC
CTCTGGGACCAGGCTCGTGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14725:132..652+

>mRNA_L-elsbetiae_contig14725.3434.1 ID=mRNA_L-elsbetiae_contig14725.3434.1|Name=mRNA_L-elsbetiae_contig14725.3434.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig14725:132..652+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGATGCGGGGGAAGGAGTTCACTTCGCCTTCTTCCAGCCGCAGGCG
AAAATACCACCTGAGCAACTTGGCCGTGTCGGCCGACCAGCGGAGGCAGA
TGGAGGAGGACTACCGCCTGGCGCTCACGATGCAGAGGGGTGGAGTAGCT
GGTGCGGCTGGTGACCGAGGTGAGATGTAAATGGAGATGCGGGGGAAGGA
GTTCACTTCGCCTTCTTCCAGCCGCAGGCGAAAATACCACCTGAGCAACT
TGGCCGTGTCGGCCGACCAGCGGAGGCAGATGGAGGAGGACTACCGCCTG
GCGCTCACGATGCAGAGGGGTGGAGTAGCTGGTGCGGCTGGTGACCGAGG
TGAGATGTAA
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