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Homology
BLAST of mRNA_L-elsbetiae_contig1471.3422.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI) HSP 1 Score: 130 bits (328), Expect = 8.270e-32 Identity = 76/188 (40.43%), Postives = 110/188 (58.51%), Query Frame = 1
Query: 67 LKVGERLTGVLLSDDTTSMFFVNPMDASVVFRH---KPPQGDSGTNGGKIPDW-GTLIHSSPRELAKVDRIRREVVEED--KKMLFRGGEEKKRGARETVLGWLPWGKTGRRQRRAREQAREHWGEVYLTMTDRGVLEGHMFGRRVLKCGGPSFFGWRKKRDDYQAWATTEGLGLKRDGAYYWGIKIQ 612
LKVGE LTG L+S S F + D ++VF +PP+ G G P+ TL+ S P ++AK IR E++ E+ ++ G+ KRGA T+ GW+P+GK G +RRARE A+ H GEV L +T+RG LEG + G RV + GPS+FG+R K Y+ W + G+ + R+G W I+ +
Sbjct: 142 LKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDWSIEAE 329
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 982 |
| Cds size | 555 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.8539333-UTR-L-elsbetiae_contig1471:8609..8973 | 1622815591.8539333-UTR-L-elsbetiae_contig1471:8609..8973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1471 8610..8973 - |
| 1691682978.4403512-UTR-L-elsbetiae_contig1471:8609..8973 | 1691682978.4403512-UTR-L-elsbetiae_contig1471:8609..8973 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1471 8610..8973 - |
| 1622815591.8857734-UTR-L-elsbetiae_contig1471:10519..10582 | 1622815591.8857734-UTR-L-elsbetiae_contig1471:10519..10582 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1471 10520..10582 - |
| 1691682978.4727337-UTR-L-elsbetiae_contig1471:10519..10582 | 1691682978.4727337-UTR-L-elsbetiae_contig1471:10519..10582 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1471 10520..10582 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815591.8649936-CDS-L-elsbetiae_contig1471:8973..9132 | 1622815591.8649936-CDS-L-elsbetiae_contig1471:8973..9132 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1471 8974..9132 - |
| 1691682978.4521987-CDS-L-elsbetiae_contig1471:8973..9132 | 1691682978.4521987-CDS-L-elsbetiae_contig1471:8973..9132 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1471 8974..9132 - |
| 1622815591.8752377-CDS-L-elsbetiae_contig1471:10123..10519 | 1622815591.8752377-CDS-L-elsbetiae_contig1471:10123..10519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1471 10124..10519 - |
| 1691682978.4624014-CDS-L-elsbetiae_contig1471:10123..10519 | 1691682978.4624014-CDS-L-elsbetiae_contig1471:10123..10519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1471 10124..10519 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1471.3422.1 >prot_L-elsbetiae_contig1471.3422.1 ID=prot_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MLKVGERLTGVLLSDDTTSMFFVNPMDASVVFRHKPPQGDSGTNGGKIPD
WGTLIHSSPRELAKVDRIRREVVEEDKKMLFRGGEEKKRGARETVLGWLP
WGKTGRRQRRAREQAREHWGEVYLTMTDRGVLEGHMFGRRVLKCGGPSFF
GWRKKRDDYQAWATTEGLGLKRDGAYYWGIKIQT* back to topmRNA from alignment at L-elsbetiae_contig1471:8610..10582- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1471.3422.1 ID=mRNA_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1973bp|location=Sequence derived from alignment at L-elsbetiae_contig1471:8610..10582- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGGCCGTGACTACTACCAGTTTCCACCTCCGGAGGGGCTGTTTCA
TTCCGAGGAACCAATGCTGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCC
TGAGTGATGATACGACATCTATGTTTTTCGTGAACCCCATGGATGCTTCA
GTGGTATTCCGCCATAAGCCGCCCCAGGGAGACAGCGGTACCAACGGCGG
AAAGATACCTGATTGGGGAACGCTCATCCACTCGAGCCCCCGGGAGTTGG
CGAAAGTCGACCGCATTCGGCGAGAGGTCGTCGAGGAGGACAAGAAGATG
CTTTTCAGAGGCGGAGAGGAGAAGAAGAGAGGAGCACGAGAGACGGTCTT
GGGCTGGTTACCCTGGGGCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGG
AACAAGCGAGGGAGCATTGGGGAGAGGTGTACCTCACGATGACGGACCGC
GGCGTGCTGGTAAGCATTTCTTTTCCCCCGCTTGTCGTGGTTGTGTATAA
AGAAGGCTAAAACAAACAGCAGTATTAGATGCGCCGATCGGCAGAAATAA
GACAGGGTGTAACATAGGGTTAAGGATGGACAACGTAGTTGAAGTTGCGG
GGAGTAGACTGCTGGTTCTGATTTATTCCTCCTTGAAACCAGTACAATAA
GAACACATGTTTGGCACCGCAATTTTTATGGGTGTCGGGATCCGTTGGAC
TGTCTTGAGCACCATTTTCTTGAAGGGTAACATCCTGGCCATCTTCACGT
GTCTGCTGTTTGAGCTGGGTTCGCAAGGCGTGTGTGCCTTTGTTGTTCAG
CAAAGCCCGACCAGATTGACGGAAAAGTGGACGTTTTGAGACGGTTTGAA
AACACAAAGTTCTCCAGATCGAAAGCTCTTGGGCACCGCTCCGGCTGTGC
TCTGACTTTGTTCCTCCAAGGTTTTTAGAAGGGGTGCTCAGCCGAAGACC
ATGTATCCAAAGACCTCGAGCGCTCCATGGCCGACCCTCGTTGCTGTCTA
CCCCAGTGTGCATGCCCTCACTTTTGCGGACACACAAAAATGTAGTTTGC
TCGGTGCAGACTAGGAAACGAACGGTCGACCGTGGTGCATATTGCTCTCT
GCTCTGCTACCAAGGAAGAGCTACCTCACGATAGTCAACCCCAAGGAAGT
TGGTGTCAGTTCTCACGTCAAAGCGCAGAAATCGATTTTGCGGTGAGAGA
GGGCAGCTGGAGAGAGATCTACCGCATTTTCTGTGGGAGATGGCAGAAAA
GAACCGCTATCAAAAAAATACGTGTCGCTTCGGGCTCTCTCCTGGAATCT
CTACCCGGAAGATTTCAAAGCTGTGCTGCGTGGTCCATCCTTAACACGCA
ATTGCTCGACCCCGGCCAAGTCGTTGTGAATTAAAAACTAAAATATGATA
CCTCAAAACTAACAATACCCCATCGCCTACTTGCTGTCCCAACATCACAG
GAGGGGCACATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGTT
TTTCGGTTGGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACCG
AGGGTCTAGGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGATC
CAAACGTGATGCGCTGTGCGTGATGCGTGTAGATTTCTTTAGTTGTTATT
GTTTCCCGTTGGGGAGTAGGAGAGAGTAGGAGAGTCAGGAGCGGGGGTCA
GGAGGATAAGTCAGGAGGAAATGGCGAGAGAAGGACAAGTCGATGGCATG
CAAGCTTGTCGGGTTTGTATTTGCGTGTTTCGCGCCGCTTTTTGTTATGA
ATGGAGAGGAGATGCTTTGTAGGCGTGTAGGCTGCCCGGCAGCTTTGGAA
ATGGGGGCGAAGGTGGCGTGAGTTGCTGTGCGTGTGTGCGCTCTTTGGTG
ATTGAGAGAGAAAAAGCGGCTGTTGAGTGTTCGTTTGCGTGTTCCGCTAC
GTTTATACTTCTACACAGTCTAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1471:8610..10582- >mRNA_L-elsbetiae_contig1471.3422.1 ID=mRNA_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1471:8610..10582- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCCTGAGTGATGATAC
GACATCTATGTTTTTCGTGAACCCCATGGATGCTTCAGTGGTATTCCGCC
ATAAGCCGCCCCAGGGAGACAGCGGTACCAACGGCGGAAAGATACCTGAT
TGGGGAACGCTCATCCACTCGAGCCCCCGGGAGTTGGCGAAAGTCGACCG
CATTCGGCGAGAGGTCGTCGAGGAGGACAAGAAGATGCTTTTCAGAGGCG
GAGAGGAGAAGAAGAGAGGAGCACGAGAGACGGTCTTGGGCTGGTTACCC
TGGGGCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGGAACAAGCGAGGGA
GCATTGGGGAGAGGTGTACCTCACGATGACGGACCGCGGCGTGCTGATGC
TGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCCTGAGTGATGATACGACA
TCTATGTTTTTCGTGAACCCCATGGATGCTTCAGTGGTATTCCGCCATAA
GCCGCCCCAGGGAGACAGCGGTACCAACGGCGGAAAGATACCTGATTGGG
GAACGCTCATCCACTCGAGCCCCCGGGAGTTGGCGAAAGTCGACCGCATT
CGGCGAGAGGTCGTCGAGGAGGACAAGAAGATGCTTTTCAGAGGCGGAGA
GGAGAAGAAGAGAGGAGCACGAGAGACGGTCTTGGGCTGGTTACCCTGGG
GCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGGAACAAGCGAGGGAGCAT
TGGGGAGAGGTGTACCTCACGATGACGGACCGCGGCGTGCTGGAGGGGCA
CATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGTTTTTCGGTT
GGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACCGAGGGTCTA
GGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGATCCAAACGTG
AGAGGGGCACATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGT
TTTTCGGTTGGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACC
GAGGGTCTAGGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGAT
CCAAACGTGA back to top
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