mRNA_L-elsbetiae_contig1470.3419.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1470.3419.1
Unique NamemRNA_L-elsbetiae_contig1470.3419.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.820e-44
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:   49 GVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEVYRFDVKRNA 327
            G  LL QPGGRSISGMALNP+DPN LFVCGDSP+LD +DARKVD PAAR+CPRS R S AHITGVAVNWCGSEV+ATYNPSGEVY FDVK++A
Sbjct:  317 GSTLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKVDVPAARFCPRSRRGSRAHITGVAVNWCGSEVVATYNPSGEVYLFDVKKHA 409
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BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.120e-43
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:   49 GVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEVYRFDVKRNA---VGTAP 342
            G  LL QPGGRSISGMALNP+DPN LFVCGDSP+LD +DARK D PAAR+CPRS R S AHITGVAVNWCG+EV+ATYNPSGEVY FDVK++A    G+AP
Sbjct:  319 GATLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKADVPAARFCPRSRRGSRAHITGVAVNWCGTEVVATYNPSGEVYLFDVKKHASRGTGSAP 419
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BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: UPI001C9D4518 (DDB1- and CUL4-associated factor 8-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D4518)

HSP 1 Score: 52.4 bits (124), Expect = 5.060e-5
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:  103 NPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGA-HITGVAVNWCGSEVLATYNPSGEVYRFD 312
            NP + N   + G S F+  YD RK   P     P++L  +   H+T VA N+ G+E+LA+YN + ++Y FD
Sbjct:  351 NPQNCNEFCIGGHSEFVRIYDRRKAKEPTLILRPKNLVETAQIHVTAVAYNYNGTEILASYN-NDDIYLFD 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJD8_9PHAE8.820e-4481.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN6_ECTSI1.120e-4376.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C9D45185.060e-538.03DDB1- and CUL4-associated factor 8-like n=1 Tax=Ve... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1470contigL-elsbetiae_contig1470:14438..16582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue8.7e-38
Seed eggNOG ortholog2880.D7FTN6
Preferred nameDCAF8
KEGG koko:K11795,ko:K11804,ko:K22204
KEGG TC1.A.46.1
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0080008,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG1334@1,KOG1334@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04121
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-11_001620.1
Exons2
Model size451
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.6391594-CDS-L-elsbetiae_contig1470:14437..146311622815591.6391594-CDS-L-elsbetiae_contig1470:14437..14631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1470 14438..14631 +
1691682978.3201902-CDS-L-elsbetiae_contig1470:14437..146311691682978.3201902-CDS-L-elsbetiae_contig1470:14437..14631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1470 14438..14631 +
1622815591.6556273-CDS-L-elsbetiae_contig1470:16326..165821622815591.6556273-CDS-L-elsbetiae_contig1470:16326..16582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1470 16327..16582 +
1691682978.3315852-CDS-L-elsbetiae_contig1470:16326..165821691682978.3315852-CDS-L-elsbetiae_contig1470:16326..16582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1470 16327..16582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1470.3419.1prot_L-elsbetiae_contig1470.3419.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1470 14438..16582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1470.3419.1

>prot_L-elsbetiae_contig1470.3419.1 ID=prot_L-elsbetiae_contig1470.3419.1|Name=mRNA_L-elsbetiae_contig1470.3419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
SGRGGSGGGSGGGGNGGVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPF
LDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEV
YRFDVKRNAVGTAPAAEAAAASSTSPSSSSSGDGDDHDGGGCGDSPGWR*
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mRNA from alignment at L-elsbetiae_contig1470:14438..16582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1470.3419.1 ID=mRNA_L-elsbetiae_contig1470.3419.1|Name=mRNA_L-elsbetiae_contig1470.3419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2145bp|location=Sequence derived from alignment at L-elsbetiae_contig1470:14438..16582+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGAGAGGCGGCAGCGGTGGCGGCAGCGGCGGCGGCGGCAACGGCGG
CGTGCCCTTGCTCGAGCAGCCCGGCGGCAGGAGCATCAGCGGGATGGCGC
TCAACCCCTCGGACCCGAACTACCTCTTCGTGTGCGGGGACTCGCCGTTC
CTCGACTGCTACGATGCACGCAAGGTCGACTCACCGGCCGCGAGGTGAGC
TCGTTTTTTTCTCTCTCGTTTGGTTGCGTGTTTGGGTTGTGTGTGTGTGT
GTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTGTTTGCGCGC
GTTTTTTGTCCGTGAGGTACATACATATTGCGTTTTGTGATTCTTGGCGA
ACGTGTGCGCGTGTTTGGTTTTGCTACTCGTCTCCTGCCGCGCCACGCTC
ACGGTCGCCCCCCACGACGAAGTTTTCGGATCGTCATGGAAATGGGAATG
GAAATGCTCCGTCGCTGAACACATCGGAATCATTGCTGAGTGCAGTCGAG
TGTCGTCTCGTACTTATCATTCGTGGTCTGGTGCTTTTGGGCTTGGTTGG
GTGTGCGTGCGTGCGCATTGCATGCAGTGCGTTATGTTGCCGGCGTTGTA
GGACGGCAGGCTCTCGCCATACGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAAC
CCCCCCCCAACGCTCAGCGCCCCCCCCAGACAGCTCGNNNNNNNNNNAGT
GCGTTATGTTGCCGGCGTTGTAGGACGGCAGGCCCTCGCCATACCCCCCC
CCCCCCCCCATCCCCCCCCCGCCGCCCCCCCTTCCCTCAACACGATCACA
CACCAAACCGAAACACATGGAAGACTACTGCTGGCGACAGACAGTTGGTG
TTGGGTGCGTGTCTGGGAGGCAGGCAATTCTTCTGGTTGTTGTTGTTGTT
GTTGTTATGTCTTTTTTGCTTTGTTGGCGGTATACGGTGCTCCCCGGACA
CCAAGGAGTTCAAAAAGAAGGAAAAGCTGTGACTCTGGTATATTTGACGG
GCTGTTAATCTGCGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCTCCCCCCCCGCC
CCCCCCCCNNNNNNNNCCCCGACACAAAGGAGTTCAAAAAGAGGGAAAGG
TGGTGCCTCGGTTTTTTTTGGGGGGCGGTTAACCGGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCTCCGGTCACAGCCGCAACCAAGCTTCGCTCTG
TTTGTTGCAAACTCCCCAATCTCACACGGATATGTATGCCCTCCGTCCGT
ATGTCTGTATGTAATTGCTGCCAGCTCCTTGAGCCTCACGTGGTTTCCAT
ATAGCGCCCTGACAGCGCGGGTTCTGCCGTTTTTCGGCCAACAAAACCTG
GTGTTCTCTTGCTGCATTTACCGCCCCCCGCCCCCCCCTCTGATTTCACG
ATTTCACGATTTGAAACCCCCCCAAAATATATATATCTTGGACCGGAAAA
AAGGGGGGTTAGTACGCCTACAACAGTCCCTCTGGAACTCTGGAACGACT
TTTTCGCAGACTACCGTATATTACTATGACATAAGATAAGACACCCCCTG
GACCGATATTGAAAGCTTGGCTACTCCGCAACGAATACGATTCTAACCAC
AAACGCCACGTTTTCGGGCAGCCCTTGATGAGATATTTCCAACGCCGCCC
TTTTCGGGACTGACGCCCTGCTTGCTGTGGAGTACTTGAGCTTTGAAAAT
CGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGTAGACGTACGTAGA
CTGCTGACATGTGTACATGTACATTTGATAAAAATAAAGGTACTGCCCGA
GAAGCCTGCGGAGATCGGGCGCGCACATCACCGGGGTCGCCGTGAACTGG
TGCGGCTCCGAGGTCCTGGCCACGTACAACCCTTCCGGAGAGGTGTACCG
CTTCGACGTGAAGAGGAACGCCGTCGGAACGGCGCCGGCGGCGGAAGCGG
CGGCAGCGTCGTCGACCTCACCGTCGTCGAGCAGCAGCGGAGACGGTGAC
GACCATGATGGTGGTGGTTGTGGTGACTCCCCAGGCTGGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1470:14438..16582+

>mRNA_L-elsbetiae_contig1470.3419.1 ID=mRNA_L-elsbetiae_contig1470.3419.1|Name=mRNA_L-elsbetiae_contig1470.3419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig1470:14438..16582+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGAGAGGCGGCAGCGGTGGCGGCAGCGGCGGCGGCGGCAACGGCGG
CGTGCCCTTGCTCGAGCAGCCCGGCGGCAGGAGCATCAGCGGGATGGCGC
TCAACCCCTCGGACCCGAACTACCTCTTCGTGTGCGGGGACTCGCCGTTC
CTCGACTGCTACGATGCACGCAAGGTCGACTCACCGGCCGCGAGAGCGGG
AGAGGCGGCAGCGGTGGCGGCAGCGGCGGCGGCGGCAACGGCGGCGTGCC
CTTGCTCGAGCAGCCCGGCGGCAGGAGCATCAGCGGGATGGCGCTCAACC
CCTCGGACCCGAACTACCTCTTCGTGTGCGGGGACTCGCCGTTCCTCGAC
TGCTACGATGCACGCAAGGTCGACTCACCGGCCGCGAGGTACTGCCCGAG
AAGCCTGCGGAGATCGGGCGCGCACATCACCGGGGTCGCCGTGAACTGGT
GCGGCTCCGAGGTCCTGGCCACGTACAACCCTTCCGGAGAGGTGTACCGC
TTCGACGTGAAGAGGAACGCCGTCGGAACGGCGCCGGCGGCGGAAGCGGC
GGCAGCGTCGTCGACCTCACCGTCGTCGAGCAGCAGCGGAGACGGTGACG
ACCATGATGGTGGTGGTTGTGGTGACTCCCCAGGCTGGAGGTGAGTACTG
CCCGAGAAGCCTGCGGAGATCGGGCGCGCACATCACCGGGGTCGCCGTGA
ACTGGTGCGGCTCCGAGGTCCTGGCCACGTACAACCCTTCCGGAGAGGTG
TACCGCTTCGACGTGAAGAGGAACGCCGTCGGAACGGCGCCGGCGGCGGA
AGCGGCGGCAGCGTCGTCGACCTCACCGTCGTCGAGCAGCAGCGGAGACG
GTGACGACCATGATGGTGGTGGTTGTGGTGACTCCCCAGGCTGGAGGTGA
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