mRNA_L-elsbetiae_contig14686.3408.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14686.3408.1
Unique NamemRNA_L-elsbetiae_contig14686.3408.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14686.3408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14686contigL-elsbetiae_contig14686:1545..2681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.5935307-CDS-L-elsbetiae_contig14686:1544..16761622815590.5935307-CDS-L-elsbetiae_contig14686:1544..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14686 1545..1676 -
1691682977.757644-CDS-L-elsbetiae_contig14686:1544..16761691682977.757644-CDS-L-elsbetiae_contig14686:1544..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14686 1545..1676 -
1622815590.6091785-CDS-L-elsbetiae_contig14686:2621..26811622815590.6091785-CDS-L-elsbetiae_contig14686:2621..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14686 2622..2681 -
1691682977.769267-CDS-L-elsbetiae_contig14686:2621..26811691682977.769267-CDS-L-elsbetiae_contig14686:2621..2681Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14686 2622..2681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14686.3408.1prot_L-elsbetiae_contig14686.3408.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14686 1545..2681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14686.3408.1

>prot_L-elsbetiae_contig14686.3408.1 ID=prot_L-elsbetiae_contig14686.3408.1|Name=mRNA_L-elsbetiae_contig14686.3408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
GGEHATVEGWLKGGVGGTISNRKFVEQLCRTSPHHSTSPACVDGTLGGQQ
SSTLSKGEVKSTI*
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mRNA from alignment at L-elsbetiae_contig14686:1545..2681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14686.3408.1 ID=mRNA_L-elsbetiae_contig14686.3408.1|Name=mRNA_L-elsbetiae_contig14686.3408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1137bp|location=Sequence derived from alignment at L-elsbetiae_contig14686:1545..2681- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGAGCATGCCACGGTCGAGGGGTGGCTCAAGGGGGGTGTGGGAGG
AACCATCTCGGTGAGTGTGTGCTGAATTCATAGTGCCGGCGTTTGCGGTT
GTTGAATTGTTTCGTCACCCGCCTCTCGTGAGTCGGTTACTTCTGAAGGT
AAATAATAATTTTTACCCATCGGTTTTGCCTCAGATACCAAGCTACGTGT
TTTTACTATCTTGTGTTGTTGTTGTTGTTGTTGTTGGTGTCGTTGCTGTT
TCTTTACATTGAAAACCGTCCGATTTCTCCACCCAGCACCTCCCATCTCA
GCTGTACTATGCCAGCACTTGATGCGGTCAATTCCCGTGGTAGACCAACT
TGCACCTAAAAAAGGTATACGAAAATCAAATGGACCCGAAGAGTCAGCAA
AGCGGTACAAATCACAGACAATAGTGCGTGCCCCTCGCTCCCCTCTCCAC
GCTATGCGAGGTAAAAACGAAACTCGACAAGCCAACATCACCAACCGGGG
TTATGCACCCCCTGGTTCTATCCTGGTAACCTAAACAATGCCAGGGTGCC
CTGTGCCGCGTTCTCGCCGGTCAGGCTCGTGTTTAGGGTAGATTACAGTA
CGCTCTAGCCTCAGATGTTTTTTTGTGGCATCCAGTGAGGGAGGGGGGGA
GGGGCTGGTGTCTGGCAATTTTGTGAAATATTGTTTATCACACAGACATC
TTTGGCATTTAACGATATTACTTGGACAGGAGAAGTGCATTTATTTTTAT
TTTCTTATTTTTGTCCGTGTATATATTCAGGAGACGACGCGTTGCAAGTT
GCTTCGTGGCGTGTTGTCGTGCACGACAGCGGTTTTCGCATTCCACGCTG
TTGTAGAGCTAAGCAAGGTTGGGTTCGCTGTGCTCATAAGTATGCGATCA
GGTTAGAGACAACTTTGGCGAGTGATTCGCCCTTAAAGTCTAAAGATCAT
TGAAATGACACGTGGGCCGTTTCTGCCTTCCCCCTGTCACGAACGTTCGC
CTCAGAATCGCAAGTTTGTCGAGCAGCTCTGCCGGACATCACCTCACCAC
AGCACGTCACCCGCTTGTGTCGACGGTACTCTTGGGGGGCAGCAAAGCTC
CACGCTGTCGAAGGGGGAAGTGAAGTCTACTATTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14686:1545..2681-

>mRNA_L-elsbetiae_contig14686.3408.1 ID=mRNA_L-elsbetiae_contig14686.3408.1|Name=mRNA_L-elsbetiae_contig14686.3408.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig14686:1545..2681- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGAGCATGCCACGGTCGAGGGGTGGCTCAAGGGGGGTGTGGGAGG
AACCATCTCGGGAGGAGAGCATGCCACGGTCGAGGGGTGGCTCAAGGGGG
GTGTGGGAGGAACCATCTCGAATCGCAAGTTTGTCGAGCAGCTCTGCCGG
ACATCACCTCACCACAGCACGTCACCCGCTTGTGTCGACGGTACTCTTGG
GGGGCAGCAAAGCTCCACGCTGTCGAAGGGGGAAGTGAAGTCTACTATTT
AGAATCGCAAGTTTGTCGAGCAGCTCTGCCGGACATCACCTCACCACAGC
ACGTCACCCGCTTGTGTCGACGGTACTCTTGGGGGGCAGCAAAGCTCCAC
GCTGTCGAAGGGGGAAGTGAAGTCTACTATTTAG
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