mRNA_L-elsbetiae_contig14684.3407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14684.3407.1
Unique NamemRNA_L-elsbetiae_contig14684.3407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.770e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:  148 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 432
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1166
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BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.800e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:  148 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 432
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBR1_ECTSI1.770e-4690.53RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JWM1_9PHAE1.800e-4690.53RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14684contigL-elsbetiae_contig14684:1695..3653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D8LBR1
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
EggNOG free text desc.chlorophyll binding
EggNOG OGsCOG5183@1,KOG1609@2759
EC2.3.2.27
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons3
Model size434
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14684.3407.1prot_L-elsbetiae_contig14684.3407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14684 1695..3652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.5309138-CDS-L-elsbetiae_contig14684:1694..17991622815590.5309138-CDS-L-elsbetiae_contig14684:1694..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 1695..1799 +
1691682977.7259853-CDS-L-elsbetiae_contig14684:1694..17991691682977.7259853-CDS-L-elsbetiae_contig14684:1694..1799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 1695..1799 +
1622815590.5434537-CDS-L-elsbetiae_contig14684:2524..26551622815590.5434537-CDS-L-elsbetiae_contig14684:2524..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 2525..2655 +
1691682977.7386189-CDS-L-elsbetiae_contig14684:2524..26551691682977.7386189-CDS-L-elsbetiae_contig14684:2524..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 2525..2655 +
1622815590.5553057-CDS-L-elsbetiae_contig14684:3456..36521622815590.5553057-CDS-L-elsbetiae_contig14684:3456..3652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 3457..3652 +
1691682977.7494268-CDS-L-elsbetiae_contig14684:3456..36521691682977.7494268-CDS-L-elsbetiae_contig14684:3456..3652Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14684 3457..3652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14684.3407.1

>prot_L-elsbetiae_contig14684.3407.1 ID=prot_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
VSHHGDGGGGGGGCRQWGAAVKAWWDGGEAGKDEEEGIIVGPPLRRPPPG
WDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLT
VLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK
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mRNA from alignment at L-elsbetiae_contig14684:1695..3653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14684.3407.1 ID=mRNA_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1959bp|location=Sequence derived from alignment at L-elsbetiae_contig14684:1695..3653+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGACAGTG
GGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAAGGACG
AGGAGGTGTGTGCCGGCTGGGTTTGTTGCGCGTGGAACTGTTGTGTATCG
AAGAGGCGATCCTGGTGCGCCCAGTCCGTCGTCTTGTCCCTCAGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTCTTGCTGTGATGGCCTGC
GAGTCCAGGGTTATGGTGTCGCCAAGGGATGTGTGGAAGGGCAGATGAGA
TTATTTATTCCTGGGTTGTTCTCCTTCCTCGCTGCTGCTGCTGAGCGTGC
CGGTTCCGTTTGTTTTTTTGTAAAGAACCTATATACATGCATACGTCCCA
GAAAAGTGCCACGCTAGGCTAACGCCCTTTTTTCACAGCAGTTCGTGCGT
TTGTAGAAAAATGCTGTTGTATTGTGCGAGTTTAGTGCCATTTAGTAGTG
TAGAGGTGTGAGGTGTGATTTTATATATATCGTGGTTTGTGGAAAATGAT
AGTGACTCAAAAGCTATACCAAAAGGTCCTCCTTACCCTGTGGTCCATTT
GCTCGCGGCAATTATTTGCTCGCGGCACTGAGGTGCAGTACGGCAGTATA
GTGGAGTGAGTACCTTGTGTATGTATATCGCAAGCAATGGCCGCACCTCG
CCCCCCCCCTCCCCTAAATGTCATCACAAGAATAACACCCGCATCATTAC
AAGCGCATCTTACGAACTCGAAACCCGTTCTTATTTTATTTCGTGTTGTC
CTGTTCTTGTTTTTCTCGCTGTGTCTACAGGAGGGTATCATCGTTGGGCC
TCCGCTGCGGCGCCCCCCTCCCGGCTGGGATGACCCGGCGGGGGTGGCGC
AAGGGAGGTGGGCGTGGGGCACGGAGCCCCCTGGCGAGGTGCAGCTCAAC
CTGGCCCCGAGGTGTGTACGGATGATGATTACGTACGTGCTGATAGCGTG
ATCGGTTTAAACTACAGCAGTATAGCAGCATGGTTTTGGTTCCTATGAGT
GCTGTTGTACCTACGGCCGTGGTTTTATTTCGCTTTGAATGAAGTCTTGG
CCCATCCACTTTACAGCAGGGGAGAATTTGACGCCTTCGAAAGATACGAT
ACATGGCTGATTCACGTACATAATACGTGCATACGACGTGTCATCTCCGG
CAAAGAAAAATGAGGGCTAAACATGTTAACGTAGATATGATGTGCAGACG
GCACACGCTTGACGGGTTTCCCATGTTCCCCCCTTTCTTCCAAGTCTCGC
CTACCCTGCCTGTCCGTATATTATGCAGCTCTCTTCTCGAGTGTCTTATT
TTGCCACGTGTGAATTTACGCGCGCGCATATGCACGCATGCTTCCATGCG
CCCTTCGGTTTTCCAACTGCTGAGGCAATTCATGTTTCTATGGTTTTATC
GCGACGCAAGGCTGTGCAACGTTCTTCGGCGCACGTTGGCAGGTTTGTGT
GCCCTTGATAACGGGTGGGTGACTGACCTCCACGCCATTTTTTATTTTTG
TGCGAAATAAACAGACGCTATGTAGCGTGGGGGGGTCTGTGTCCAACCTG
GGAACAAAAAAGACGCGTTCCCCAGGGGAACTGTCATTTTCTGGTGTTTT
AGTGGTGTATAATACATACATGTATGATGATTTCCCCGCAACTGAGGTTG
GTGGCCTCGAAACGAAACGAAACGAAACGAAACGCACCGATTTTTGTCTG
AAACCCCGTCAGGCGGCGGCACGGCGCGCGCACGGTACCCCTGGTGGCCC
TGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGCGCTGTGCCTC
GTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGCTGGCCCACCT
GCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTCGGGCTCACGC
TCCTCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14684:1695..3653+

>mRNA_L-elsbetiae_contig14684.3407.1 ID=mRNA_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig14684:1695..3653+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGACAGTG
GGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAAGGACG
AGGAGGTCAGCCACCATGGTGACGGCGGCGGCGGTGGCGGTGGCTGCAGA
CAGTGGGGCGCGGCCGTAAAGGCCTGGTGGGACGGAGGAGAAGCGGGCAA
GGACGAGGAGGAGGGTATCATCGTTGGGCCTCCGCTGCGGCGCCCCCCTC
CCGGCTGGGATGACCCGGCGGGGGTGGCGCAAGGGAGGTGGGCGTGGGGC
ACGGAGCCCCCTGGCGAGGTGCAGCTCAACCTGGCCCCGAGGAGGGTATC
ATCGTTGGGCCTCCGCTGCGGCGCCCCCCTCCCGGCTGGGATGACCCGGC
GGGGGTGGCGCAAGGGAGGTGGGCGTGGGGCACGGAGCCCCCTGGCGAGG
TGCAGCTCAACCTGGCCCCGAGGCGGCGGCACGGCGCGCGCACGGTACCC
CTGGTGGCCCTGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGC
GCTGTGCCTCGTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGC
TGGCCCACCTGCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTC
GGGCTCACGCTCCTCAAGGCGGCGGCACGGCGCGCGCACGGTACCCCTGG
TGGCCCTGCTGCTGCTGGCGGCGTGGCTGACCGTGCTGGCGGCGGCGCTG
TGCCTCGTGGTCCTCCCTTTCTTGCTGGGCCGGCTCGTGTTCTCGCTGGC
CCACCTGCCGACCCACTGGACGCACGACACGGCCAGCTTCGCCGTCGGGC
TCACGCTCCTCAAG
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