mRNA_L-elsbetiae_contig14671.3403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14671.3403.1
Unique NamemRNA_L-elsbetiae_contig14671.3403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 9.420e-61
Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 2
Query:   44 EWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            +WVP++PI EAP+PGTAKSV+V+DLDLCVAADE+GLLYVLGNKCPPANQPLSFSLV NN IKDPVLGTKI+IETGDV+EWCP+LLGKLLSPILG +PENAGV  F VR
Sbjct:   49 QWVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVR 156          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S3P6K4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6K4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.160e-30
Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   26 KSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            K +   ++VP +PI++ P PG+A S     L +C+A DE+G +Y LG+KCPP NQPLSF  V   CI DPVLG+K +++TG+VV WCPS LGKLL     P     GV  + V+
Sbjct:   54 KYKPALKYVPCIPIEQLPKPGSATSGEAGGLAICIAVDEKGAIYALGDKCPPVNQPLSFGKVEGGCISDPVLGSKFDLKTGEVVSWCPSGLGKLLGGAFSP----TGVVTYPVK 163          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6U3SB47_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SB47_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.340e-30
Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 2
Query:    8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            T +  KK   K +++P +   + P+PG+A S     L +C+A DE+G ++ LG+KCPP NQPLSF  VV   I DPVLGT+ +++TG+VV WCPS LGKL+  I  P     GV V+ V+
Sbjct:   26 TALNAKKVGPKLQYMPCISTDDLPAPGSATSGVAGGLAICIAVDEKGSVFALGDKCPPVNQPLSFGKVVGGTIADPVLGTQFDLKTGEVVSWCPSGLGKLIGGIFDP----VGVPVYPVQ 141          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2VVZ0_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVZ0_9STRA)

HSP 1 Score: 114 bits (286), Expect = 8.400e-30
Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   14 MAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            +  KK   K ++ P +P K  P PGTA S     L +C+A D+ G +Y LG+KCPP NQPLSF  V N CI+DPVLGTK N++ G V   WCPS +GKLL  +  P    +GV  + V+
Sbjct:   32 LQAKKIGPKLQYAPCIPTKNIPKPGTATSGVAGGLAICIAVDQDGSIYALGDKCPPVNQPLSFGKVSNGCIEDPVLGTKFNLKKGTVEGPWCPSGIGKLLGGLFEP----SGVPTYPVK 146          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6U5FSV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FSV0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.820e-29
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 2
Query:    8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            T ++ KK +   ++VPV+  ++AP PG+A S     L +CVA    G LY LG+KCPP NQPLSF  V  + I+DPVLGTK +++TG+VV+WCP+ +GKL+  +  P    AGV  + ++
Sbjct:   34 TELSAKKFKQALKYVPVITKEQAPKPGSATSGVAGGLAICVACSPTGQLYALGDKCPPVNQPLSFGKVNKDTIEDPVLGTKFSLKTGEVVDWCPAGIGKLVGGLFEP----AGVPTYPIK 149          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2IGL8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGL8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.640e-29
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   32 QSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            +SK ++VP +  ++ P PG A S     L +C+A DE+G +Y LG+KCPP NQPLSF  V   CI+DPVLGTK N++TG+V  +WCP  +GKLL  +  P    +GV VF V+
Sbjct:   37 KSKVQYVPCISTEDLPEPGFATSGVAGGLAICIAVDEKGSVYALGDKCPPVNQPLSFGRVRGGCIEDPVLGTKFNLKTGEVEGKWCPGGIGKLLGGLFEP----SGVPVFPVK 145          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6S9DYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9DYT7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.350e-28
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   32 QSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            ++K ++VP +  ++ P+PG A S     L +C+A DE G +Y LG+KCPP NQPLSF  V   CI+DPVLGTK N++TG+V  +WCP  +GKLL  +  P    +GV V+ V+
Sbjct:   38 KAKVQYVPCIATEDLPAPGQATSGVAGGLAICIAVDENGSVYALGDKCPPINQPLSFGRVAGGCIEDPVLGTKFNLKTGEVEGKWCPGGVGKLLGGLFDP----SGVPVYPVK 146          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: B8CBE4_THAPS (Rieske domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE4_THAPS)

HSP 1 Score: 108 bits (271), Expect = 1.380e-27
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 2
Query:    8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLV-VNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            T +   K ++K ++VP +   + P PG+A S     L +C+A D +G +Y LG+KCPP NQPLSF  V  +  I DPVLGTK +++TG+VV WCP+ LGKL+  +  P     GV V+ V+
Sbjct:   26 TALNAAKGKAKLQYVPCISTADLPKPGSATSGVAGGLAICIAVDPKGAVYALGDKCPPVNQPLSFGKVDKDGTIADPVLGTKFDLKTGEVVSWCPTGLGKLIGGLFDP----VGVPVYPVK 142          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S0P831_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0P831_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 9.650e-27
Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 2
Query:   11 MMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKV 364
            + AG+  + K ++VPV+   + P  G+A S     L +C+A    G L+ LG+KCPP NQPLSF  V    I+DPVLGT  N++TG V  WCPS LGKLL  +  P    +GV V+ V
Sbjct:   36 LSAGRTYKEKLKYVPVITQAQLPPKGSATSGVAGGLAICIAVSPTGQLFALGDKCPPVNQPLSFGKVTATAIEDPVLGTAFNLKTGQVENWCPSGLGKLLGGLFEP----SGVPVYPV 149          
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2TF77_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TF77_PROMC)

HSP 1 Score: 104 bits (260), Expect = 3.320e-26
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   38 KFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVE--WCPSLLGKLLSPILGPEPENAGVNVFKVR 367
            K ++VP +   E P PG A S     L +C+A DE+G ++ LG+KCPP NQPLSF  V + CI+DPVLGTK N++TG V E  WC S +GK++  +  P    AGV  +  +
Sbjct:   11 KLQFVPCISKDELPGPGKATSGVAGGLAICIAVDEKGSVFALGDKCPPINQPLSFGKVADGCIQDPVLGTKFNLKTGAVAEGDWCTSPIGKIVGGLFEP----AGVPTYSCK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LI27_ECTSI9.420e-6183.33Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S3P6K4_9STRA1.160e-3048.25Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U3SB47_9STRA7.340e-3045.83Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2VVZ0_9STRA8.400e-3047.06Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A6U5FSV0_9STRA1.820e-2945.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2IGL8_9STRA4.640e-2948.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9DYT7_9STRA1.350e-2846.90Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CBE4_THAPS1.380e-2743.80Rieske domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S0P831_9EUKA9.650e-2744.92Hypothetical protein (Fragment) n=1 Tax=Minchinia ... [more]
A0A7S2TF77_PROMC3.320e-2645.54Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14671contigL-elsbetiae_contig14671:1587..2557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.7
Seed ortholog evalue1.3e-47
Seed eggNOG ortholog2880.D8LI27
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2DKM1@1,2S634@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-04_003000.1
Exons2
Model size367
Cds size357
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14671.3403.1prot_L-elsbetiae_contig14671.3403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14671 1597..2557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3332877-UTR-L-elsbetiae_contig14671:1586..15961622815590.3332877-UTR-L-elsbetiae_contig14671:1586..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14671 1587..1596 +
1691682977.6295094-UTR-L-elsbetiae_contig14671:1586..15961691682977.6295094-UTR-L-elsbetiae_contig14671:1586..1596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14671 1587..1596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.3472617-CDS-L-elsbetiae_contig14671:1596..17941622815590.3472617-CDS-L-elsbetiae_contig14671:1596..1794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14671 1597..1794 +
1691682977.645383-CDS-L-elsbetiae_contig14671:1596..17941691682977.645383-CDS-L-elsbetiae_contig14671:1596..1794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14671 1597..1794 +
1622815590.3605888-CDS-L-elsbetiae_contig14671:2398..25571622815590.3605888-CDS-L-elsbetiae_contig14671:2398..2557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14671 2399..2557 +
1691682977.6582086-CDS-L-elsbetiae_contig14671:2398..25571691682977.6582086-CDS-L-elsbetiae_contig14671:2398..2557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14671 2399..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14671.3403.1

>prot_L-elsbetiae_contig14671.3403.1 ID=prot_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYV
LGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLL
SPILGPEPENAGVNVFKVR
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mRNA from alignment at L-elsbetiae_contig14671:1587..2557+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14671.3403.1 ID=mRNA_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig14671:1587..2557+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGGTCACAATGATGGCGGGGAAAAAATCACAGTCAAAGTTCGAGTGGG TCCCCGTTGTCCCGATCAAGGAAGCGCCGTCGCCCGGCACCGCCAAGTCA GTGTTCGTGTCGGACCTCGACCTCTGCGTTGCTGCAGACGAGCAAGGGCT GCTTTACGTGCTCGGGAACAAGTGCCCCCCGGCCAATCAGCCGCTGTCCT TCAGCCTGGTGAGATATATTTCACGAAGTCTAACCCTCTGTATAATTCTT TGGCTTGCGCTCGGCATCGGAGAGATAAATACAACCTGATGCCGTAGATC GGACCGCCATTTGAACCCGATTTTTTTGTGAGCAAGACATGTCGGCTTCG CCCGAATAGCATACGCCGCGTTCCTGAAAAGTATGGTATGTGCACTCCCA ACATGTATCTAATATGATATGTGTGCTCCCAACATGAGTCGACACGGTTC CGTAAGAGCAGAAAAATGTAGGCACTTGTAAATCAGGAGCCCAGGATTCT CTCTCAACAGCAGTCACACAGATATGTGCCGCGATCACCTTGGTCATAAG CTGCGCCCCCTCCGTAAAATGCGACCGAGGAAAGTGCATGCTGTTTCACG CAAAACCGCCGCTGTATGTATTCAGCTGGTAATTGAATATAAAAGCGAGA ACTTTCGAACCCTTCTTTTCATGTATCTGCCGGTGGGCAGTTTCAAAAAC AACGAACCCCGTCGAGAGGAGTTATGCTTGCACGTACACATACATATACA CATACATACATACATTCATATTGAAGTTTCAATGATTGCGTGTTGGTTTG TCGTGTTTGCAGGTGGTGAACAACTGCATCAAGGACCCGGTACTTGGCAC CAAGATCAACATCGAAACGGGAGACGTCGTGGAGTGGTGCCCGTCGCTCT TGGGAAAGCTGCTCAGCCCTATTCTGGGCCCCGAACCCGAAAATGCGGGC GTCAACGTCTTCAAGGTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14671:1587..2557+

>mRNA_L-elsbetiae_contig14671.3403.1 ID=mRNA_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig14671:1587..2557+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCGGGGAAAAAATCACAGTCAAAGTTCGAGTGGGTCCCCGTTGT
CCCGATCAAGGAAGCGCCGTCGCCCGGCACCGCCAAGTCAGTGTTCGTGT
CGGACCTCGACCTCTGCGTTGCTGCAGACGAGCAAGGGCTGCTTTACGTG
CTCGGGAACAAGTGCCCCCCGGCCAATCAGCCGCTGTCCTTCAGCCTGAT
GATGGCGGGGAAAAAATCACAGTCAAAGTTCGAGTGGGTCCCCGTTGTCC
CGATCAAGGAAGCGCCGTCGCCCGGCACCGCCAAGTCAGTGTTCGTGTCG
GACCTCGACCTCTGCGTTGCTGCAGACGAGCAAGGGCTGCTTTACGTGCT
CGGGAACAAGTGCCCCCCGGCCAATCAGCCGCTGTCCTTCAGCCTGGTGG
TGAACAACTGCATCAAGGACCCGGTACTTGGCACCAAGATCAACATCGAA
ACGGGAGACGTCGTGGAGTGGTGCCCGTCGCTCTTGGGAAAGCTGCTCAG
CCCTATTCTGGGCCCCGAACCCGAAAATGCGGGCGTCAACGTCTTCAAGG
TGAGGGTGGTGAACAACTGCATCAAGGACCCGGTACTTGGCACCAAGATC
AACATCGAAACGGGAGACGTCGTGGAGTGGTGCCCGTCGCTCTTGGGAAA
GCTGCTCAGCCCTATTCTGGGCCCCGAACCCGAAAATGCGGGCGTCAACG
TCTTCAAGGTGAGG
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