mRNA_L-elsbetiae_contig14671.3403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI) HSP 1 Score: 193 bits (491), Expect = 9.420e-61 Identity = 90/108 (83.33%), Postives = 101/108 (93.52%), Query Frame = 2 Query: 44 EWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 +WVP++PI EAP+PGTAKSV+V+DLDLCVAADE+GLLYVLGNKCPPANQPLSFSLV NN IKDPVLGTKI+IETGDV+EWCP+LLGKLLSPILG +PENAGV F VR Sbjct: 49 QWVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVR 156
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S3P6K4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6K4_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.160e-30 Identity = 55/114 (48.25%), Postives = 74/114 (64.91%), Query Frame = 2 Query: 26 KSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 K + ++VP +PI++ P PG+A S L +C+A DE+G +Y LG+KCPP NQPLSF V CI DPVLG+K +++TG+VV WCPS LGKLL P GV + V+ Sbjct: 54 KYKPALKYVPCIPIEQLPKPGSATSGEAGGLAICIAVDEKGAIYALGDKCPPVNQPLSFGKVEGGCISDPVLGSKFDLKTGEVVSWCPSGLGKLLGGAFSP----TGVVTYPVK 163
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6U3SB47_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SB47_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.340e-30 Identity = 55/120 (45.83%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 T + KK K +++P + + P+PG+A S L +C+A DE+G ++ LG+KCPP NQPLSF VV I DPVLGT+ +++TG+VV WCPS LGKL+ I P GV V+ V+ Sbjct: 26 TALNAKKVGPKLQYMPCISTDDLPAPGSATSGVAGGLAICIAVDEKGSVFALGDKCPPVNQPLSFGKVVGGTIADPVLGTQFDLKTGEVVSWCPSGLGKLIGGIFDP----VGVPVYPVQ 141
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2VVZ0_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVZ0_9STRA) HSP 1 Score: 114 bits (286), Expect = 8.400e-30 Identity = 56/119 (47.06%), Postives = 73/119 (61.34%), Query Frame = 2 Query: 14 MAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 + KK K ++ P +P K P PGTA S L +C+A D+ G +Y LG+KCPP NQPLSF V N CI+DPVLGTK N++ G V WCPS +GKLL + P +GV + V+ Sbjct: 32 LQAKKIGPKLQYAPCIPTKNIPKPGTATSGVAGGLAICIAVDQDGSIYALGDKCPPVNQPLSFGKVSNGCIEDPVLGTKFNLKKGTVEGPWCPSGIGKLLGGLFEP----SGVPTYPVK 146
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6U5FSV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FSV0_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.820e-29 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 T ++ KK + ++VPV+ ++AP PG+A S L +CVA G LY LG+KCPP NQPLSF V + I+DPVLGTK +++TG+VV+WCP+ +GKL+ + P AGV + ++ Sbjct: 34 TELSAKKFKQALKYVPVITKEQAPKPGSATSGVAGGLAICVACSPTGQLYALGDKCPPVNQPLSFGKVNKDTIEDPVLGTKFSLKTGEVVDWCPAGIGKLVGGLFEP----AGVPTYPIK 149
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2IGL8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGL8_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.640e-29 Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 2 Query: 32 QSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 +SK ++VP + ++ P PG A S L +C+A DE+G +Y LG+KCPP NQPLSF V CI+DPVLGTK N++TG+V +WCP +GKLL + P +GV VF V+ Sbjct: 37 KSKVQYVPCISTEDLPEPGFATSGVAGGLAICIAVDEKGSVYALGDKCPPVNQPLSFGRVRGGCIEDPVLGTKFNLKTGEVEGKWCPGGIGKLLGGLFEP----SGVPVFPVK 145
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A6S9DYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9DYT7_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.350e-28 Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 2 Query: 32 QSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVV-EWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 ++K ++VP + ++ P+PG A S L +C+A DE G +Y LG+KCPP NQPLSF V CI+DPVLGTK N++TG+V +WCP +GKLL + P +GV V+ V+ Sbjct: 38 KAKVQYVPCIATEDLPAPGQATSGVAGGLAICIAVDENGSVYALGDKCPPINQPLSFGRVAGGCIEDPVLGTKFNLKTGEVEGKWCPGGVGKLLGGLFDP----SGVPVYPVK 146
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: B8CBE4_THAPS (Rieske domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBE4_THAPS) HSP 1 Score: 108 bits (271), Expect = 1.380e-27 Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 2 Query: 8 TMMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLV-VNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKVR 367 T + K ++K ++VP + + P PG+A S L +C+A D +G +Y LG+KCPP NQPLSF V + I DPVLGTK +++TG+VV WCP+ LGKL+ + P GV V+ V+ Sbjct: 26 TALNAAKGKAKLQYVPCISTADLPKPGSATSGVAGGLAICIAVDPKGAVYALGDKCPPVNQPLSFGKVDKDGTIADPVLGTKFDLKTGEVVSWCPTGLGKLIGGLFDP----VGVPVYPVK 142
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S0P831_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Minchinia chitonis TaxID=262233 RepID=A0A7S0P831_9EUKA) HSP 1 Score: 105 bits (263), Expect = 9.650e-27 Identity = 53/118 (44.92%), Postives = 71/118 (60.17%), Query Frame = 2 Query: 11 MMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVEWCPSLLGKLLSPILGPEPENAGVNVFKV 364 + AG+ + K ++VPV+ + P G+A S L +C+A G L+ LG+KCPP NQPLSF V I+DPVLGT N++TG V WCPS LGKLL + P +GV V+ V Sbjct: 36 LSAGRTYKEKLKYVPVITQAQLPPKGSATSGVAGGLAICIAVSPTGQLFALGDKCPPVNQPLSFGKVTATAIEDPVLGTAFNLKTGQVENWCPSGLGKLLGGLFEP----SGVPVYPV 149
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Match: A0A7S2TF77_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TF77_PROMC) HSP 1 Score: 104 bits (260), Expect = 3.320e-26 Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 2 Query: 38 KFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVLGNKCPPANQPLSFSLVVNNCIKDPVLGTKINIETGDVVE--WCPSLLGKLLSPILGPEPENAGVNVFKVR 367 K ++VP + E P PG A S L +C+A DE+G ++ LG+KCPP NQPLSF V + CI+DPVLGTK N++TG V E WC S +GK++ + P AGV + + Sbjct: 11 KLQFVPCISKDELPGPGKATSGVAGGLAICIAVDEKGSVFALGDKCPPINQPLSFGKVADGCIQDPVLGTKFNLKTGAVAEGDWCTSPIGKIVGGLFEP----AGVPTYSCK 118 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14671.3403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14671.3403.1 >prot_L-elsbetiae_contig14671.3403.1 ID=prot_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp MMAGKKSQSKFEWVPVVPIKEAPSPGTAKSVFVSDLDLCVAADEQGLLYVback to top mRNA from alignment at L-elsbetiae_contig14671:1587..2557+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig14671.3403.1 ID=mRNA_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=971bp|location=Sequence derived from alignment at L-elsbetiae_contig14671:1587..2557+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig14671:1587..2557+ >mRNA_L-elsbetiae_contig14671.3403.1 ID=mRNA_L-elsbetiae_contig14671.3403.1|Name=mRNA_L-elsbetiae_contig14671.3403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig14671:1587..2557+ (Laminarionema elsbetiae ELsaHSoW15)back to top |