mRNA_L-elsbetiae_contig1463.3381.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1463.3381.1
Unique NamemRNA_L-elsbetiae_contig1463.3381.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 2.740e-95
Identity = 208/442 (47.06%), Postives = 236/442 (53.39%), Query Frame = 1 
Query:    1 FVCGACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPE-QSSSWSG---GGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDSTSDPEGPSALRQKGDGARAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARGAWKDETGTGIPDEPAGTLRAAGRGGGXXXXXXXXDESCLPGRSGAGGLTTGAGAPPKGAPSSSTPAGXXXXXXXXXXXXXXARASGSALAPPPSESAAPFTAPPPLPPHVWASGQYYTRPTSREHPDA-TTAGSTDRARFPDTAV 1311
            F  G  RSAPTVTE SHGQ FH LPRFAPYLFHNV GGRL+RGG G   A SLSNP EV YI SLL DL+TTFP T+FNG++GVIAPYRNQI+AL+RGMW TGLR DGV++STVDGFQGREKDIMIFSCVRAPE Q S  SG   GGGVGFLDDWRRLNVAITRAK+AMWIVGH+GVLKQS +WRELINDSKKR AF+DS S+P   S+ R  G     GS+                                                                           +W D T T + ++ A +  ++ R           D                 G  P+G  +                    AR  GSA A  PS    P TAPPPLP H+WASG YY R ++   P A   AG T   R  D AV
Sbjct: 1051 FYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAKSLSNPTEVSYITSLLHDLITTFPGTDFNGKIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSGGGVGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRDAFIDS-SNPGATSSGRNSGSNTSRGSNGGD------------------------------------------------------------------------SWTDTTSTRVLEKEAPSAASSTRSRSAVVVGADQDRE--------------RGHDPRG--NGQVGETKHESRQHNVAAMALARGEGSASAAMPSLHTTPLTAPPPLPSHIWASGNYYNRQSAPAQPPAGLRAGGTGSGRS-DAAV 1402
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 4.720e-95
Identity = 165/222 (74.32%), Postives = 182/222 (81.98%), Query Frame = 1 
Query:    1 FVCGACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPE-QSSSWSG---GGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDSTSDPEGPSALRQKGDGARAGSS 654
            F  G  RSAPTVTE SHGQ FH LPRFAPYLFHNV GGRL+RGG G   A SLSNP EV YI SLL+DL+TTFP T+FNGR+GVIAPYRNQI+AL+RGMW TGLR DGV++STVDGFQGREKDIMIFSCVRAPE Q S  SG   GGG+GFLDDWRRLNVAITRAK+AMWIVGH+GVLKQS +WRELINDSKKR AF+DS S+P   S+ R  G     GS+
Sbjct:  860 FYSGLLRSAPTVTEASHGQVFHRLPRFAPYLFHNVSGGRLKRGGEGYGGAKSLSNPTEVSYITSLLQDLITTFPGTDFNGRIGVIAPYRNQIRALQRGMWSTGLRHDGVEVSTVDGFQGREKDIMIFSCVRAPELQRSGDSGSSSGGGIGFLDDWRRLNVAITRAKFAMWIVGHAGVLKQSTDWRELINDSKKRNAFIDS-SNPGATSSGRNSGSTTTRGSN 1080
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A0L0T8U0_ALLM3 (UvrD-like helicase ATP-binding domain-containing protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T8U0_ALLM3)

HSP 1 Score: 148 bits (373), Expect = 1.250e-33
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:   64 HLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQ-------DGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAF 579
            H    F P  F +V GGR Q GGAG     SL N AE++ +L L+  LVT  P TNF  R+G+I PY++Q  ALR       LRQ       + VD++TVDGFQG+EKDI+I + VRA +        GG+GF+ D RR+NVA+TRAKY + +VG +  L Q+K WR+L+  +K++G F
Sbjct: 1389 HASGLFGPIRFFDVVGGRQQGGGAGR----SLRNVAELDAVLHLVHTLVTAHPNTNFCSRIGIITPYKDQKSALR-----DRLRQVYGPDVLEYVDVNTVDGFQGQEKDIIIMTTVRAGDSQ------GGIGFVADQRRMNVALTRAKYTLLVVGSAAALTQNKCWRQLVGHAKEKGVF 1552
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A1Y1Z4H4_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z4H4_9FUNG)

HSP 1 Score: 147 bits (371), Expect = 1.360e-33
Identity = 82/192 (42.71%), Postives = 118/192 (61.46%), Query Frame = 1 
Query:   19 RSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQ---DGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVD 585
            R  P + +I   Q +H   +FAPY F NV  GR + G        SL N  E E  ++L+  L   FP  NF+ R+G+I PY+ Q++ LRR  + +   Q     +D +TVDGFQG+EKDI+IFSCVRA  +   W G   +GFL D RR+NV +TRA+Y+++I+G+S  L ++K WR L+ D+++R  FVD
Sbjct:  655 RDGPNLAQIKT-QKWHENRKFAPYNFLNVHSGREEIG-----RGKSLYNTKEAEIAVALVHHLCKAFPTINFSNRIGIITPYKQQLRELRR-RFESAFGQTITQVIDFNTVDGFQGQEKDIIIFSCVRAGNRK--WHG---IGFLADIRRMNVGLTRARYSLFILGNSKSLLENKYWRPLVEDAQERKCFVD 834
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A1V9YWE5_9STRA (AAA_12 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YWE5_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.470e-33
Identity = 76/185 (41.08%), Postives = 110/185 (59.46%), Query Frame = 1 
Query:   40 EISHG-----QDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAF 579
            ++ HG     + +HL P F PY+F+++  G  Q    G+TS  +L    EV++I++L+  LV +FP  NF GR+G+I+PY++QI  L         RQ  V+++TVDGFQGREK+I+I SCVR          G    F  D RR+NVA+TRA  + W+VG+S +L Q+  W  LI D K R  +
Sbjct:   36 QLQHGGQPRDRPYHLKPEFGPYVFYDIVEGE-QSKPEGSTSYRNLH---EVDFIVNLVTKLVQSFPNYNFRGRIGIISPYKSQIHELSTAFTRLNYRQH-VEVNTVDGFQGREKEIIIVSCVRTVR-------GRENTFWGDVRRMNVALTRAISSCWVVGNSALLGQNTTWYTLIEDCKARDCY 208
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: UPI000D1CB6B0 (probable helicase MAGATAMA 3 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1CB6B0)

HSP 1 Score: 142 bits (359), Expect = 1.590e-33
Identity = 76/188 (40.43%), Postives = 110/188 (58.51%), Query Frame = 1 
Query:   10 GACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRG 573
            G  +   TV   +    FH   RF PY F ++  G+ + G     S  SL+NP E E+I  LLR L   +P     GR+GVI PY+ Q + L+  M        G+D++TVD FQGRE DI++ S VRA    S      GVGFL D RR+NVA+TRAK+++W+VG++  L+++ +W+ L+ D ++RG
Sbjct:  230 GQLKDGSTVLHGNRSAPFHRERRFEPYRFFDIRDGQERPG-----SMQSLTNPDEAEFIFQLLRVLKERYPEEVRPGRIGVITPYQEQRKVLQENMRSL---HSGIDVNTVDSFQGREADIIVLSTVRASFGESQ----AGVGFLADVRRMNVALTRAKFSLWVVGNARTLERNSDWKALLQDCRRRG 405
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: D5G7P6_TUBMM (CCHC-type domain-containing protein n=1 Tax=Tuber melanosporum (strain Mel28) TaxID=656061 RepID=D5G7P6_TUBMM)

HSP 1 Score: 147 bits (371), Expect = 2.370e-33
Identity = 84/203 (41.38%), Postives = 122/203 (60.10%), Query Frame = 1 
Query:   61 FHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALR---RGMWHTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDSTSDPEGPSAL--RQKGDGARAGSS 654
            +H  P +APY F N+ G   Q    G     SL N  E +  LSL + L   FP+TNF+G++G+I PY+ QI  L+   R ++   +  D +D +T D FQGRE+DI+IFSCVRA ++       GG+GFL D RR+NV +TRAK++++++GHS  L +++ W  L+ D+K RG F + T    G +A   R  G GA  GS+
Sbjct: 1584 WHKNPIYAPYRFFNIAG---QESAGGL---HSLVNRQEAQSALSLYQRLTADFPQTNFDGKIGIITPYKQQINLLKTTFRDVYGENIC-DTIDFNTTDAFQGRERDIIIFSCVRASQE-------GGIGFLSDVRRMNVGLTRAKFSLFVLGHSTSLMRNRLWASLVQDAKDRGVFDEETFAEFGSNAKGNRAGGTGAFRGST 1772
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A4P9Z1F4_9FUNG (AAA domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z1F4_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 3.950e-33
Identity = 76/199 (38.19%), Postives = 121/199 (60.80%), Query Frame = 1 
Query:    1 FVCGACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALR-RGMWHTGLR-QDGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDST 591
            F  G  +  P + E +    +H    FAP++F+NV  GR Q  G       S SN  E+E ++ L+  LV+ F + +F GR+GVI PY+ QI++LR + +   G R ++ +D +T+DGFQG+EKDI++FSCVRA   +        +GFL D RR+NVA+TRA+ ++++VG+S  L+    WR L+++++ R    + T
Sbjct:  124 FYQGQIKDGPGMAERTQA-PWHQSDLFAPFVFYNVADGREQSYGG-----RSFSNLREIEVVIGLIDRLVSQFTKVDFAGRIGVITPYKEQIRSLRLQCLRRYGERIREVIDFNTIDGFQGQEKDIILFSCVRASRHNR-------LGFLSDIRRMNVALTRARCSLFVVGNSETLQADNHWRSLVDEARTRQCIYEVT 309
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: U4L0J1_PYROM (Similar to Uncharacterized ATP-dependent helicase C29A10.10c acc. no. O94387 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4L0J1_PYROM)

HSP 1 Score: 146 bits (369), Expect = 4.280e-33
Identity = 77/181 (42.54%), Postives = 111/181 (61.33%), Query Frame = 1 
Query:   55 QDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQ--DGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDST 591
            Q +H    F PY F N+        GA A   +SL NP E    L+L   + T F   NF+G++G++ PYR Q+  LRR   +    +   GV+ +TVD FQGRE+DIMIFSCVRA ++       GG+GFL D RR+NV +TRAK +++I+G+S  L +S  W+ LI+D+K+R AF +++
Sbjct: 1589 QPWHNSSIFGPYRFFNI-------AGAEAREKTSLVNPDEARAALALFNRITTDFHEVNFDGKIGIVTPYRQQLSELRRVFQNKYGEKILTGVEFNTVDAFQGRERDIMIFSCVRAAQE-------GGIGFLADVRRMNVGLTRAKSSLFILGNSNFLIRSHMWKRLIDDAKERNAFTENS 1755
[Close]
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Match: A0A376B398_9ASCO (Related to Helicase SEN1 n=2 Tax=Saccharomycodes ludwigii TaxID=36035 RepID=A0A376B398_9ASCO)

HSP 1 Score: 145 bits (367), Expect = 7.860e-33
Identity = 77/195 (39.49%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:    1 FVCGACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSASSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMWHTGLRQ--DGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDDWRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAF 579
            F  G  +  P +  I+  +++H    F PY F ++  G  +R         S  NP E++  L L+  L +  PR +F G++G+I+PYR Q+  L+R   +   RQ  + VD +T+DGFQG+EK+++I SCVRA + S++     GVGFL D+RR+NVA+TRAK +MWI+GH   L +++ WR+LI D+K+R   
Sbjct: 1661 FYNGELKDGPNLDVITK-REWHRYEPFTPYKFFDIIDGYEKRNA----KTMSFVNPEEIKVALELVGTLFSKLPRYDFKGKIGIISPYREQMFQLKRSFINEFGRQILNEVDFNTIDGFQGQEKEVIIISCVRADDNSNA-----GVGFLKDFRRMNVALTRAKCSMWILGHHKSLVKNRLWRDLIMDAKERSCL 1845
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1463.3381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS06_9PHAE2.740e-9547.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE51_ECTSI4.720e-9574.32SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A0L0T8U0_ALLM31.250e-3345.81UvrD-like helicase ATP-binding domain-containing p... [more]
A0A1Y1Z4H4_9FUNG1.360e-3342.71p-loop containing nucleoside triphosphate hydrolas... [more]
A0A1V9YWE5_9STRA1.470e-3341.08AAA_12 domain-containing protein n=1 Tax=Thraustot... [more]
UPI000D1CB6B01.590e-3340.43probable helicase MAGATAMA 3 n=1 Tax=Selaginella m... [more]
D5G7P6_TUBMM2.370e-3341.38CCHC-type domain-containing protein n=1 Tax=Tuber ... [more]
A0A4P9Z1F4_9FUNG3.950e-3338.19AAA domain-containing protein (Fragment) n=1 Tax=S... [more]
U4L0J1_PYROM4.280e-3342.54Similar to Uncharacterized ATP-dependent helicase ... [more]
A0A376B398_9ASCO7.860e-3339.49Related to Helicase SEN1 n=2 Tax=Saccharomycodes l... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1463contigL-elsbetiae_contig1463:21669..25921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue3.6e-87
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons4
Model size1752
Cds size1752
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1463.3381.1prot_L-elsbetiae_contig1463.3381.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1463 21669..25921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.579595-CDS-L-elsbetiae_contig1463:21668..229411622815588.579595-CDS-L-elsbetiae_contig1463:21668..22941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 21669..22941 -
1691682976.5705137-CDS-L-elsbetiae_contig1463:21668..229411691682976.5705137-CDS-L-elsbetiae_contig1463:21668..22941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 21669..22941 -
1622815588.5918713-CDS-L-elsbetiae_contig1463:23291..234111622815588.5918713-CDS-L-elsbetiae_contig1463:23291..23411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 23292..23411 -
1691682976.5806684-CDS-L-elsbetiae_contig1463:23291..234111691682976.5806684-CDS-L-elsbetiae_contig1463:23291..23411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 23292..23411 -
1622815588.6016915-CDS-L-elsbetiae_contig1463:24560..247191622815588.6016915-CDS-L-elsbetiae_contig1463:24560..24719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 24561..24719 -
1691682976.5899649-CDS-L-elsbetiae_contig1463:24560..247191691682976.5899649-CDS-L-elsbetiae_contig1463:24560..24719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 24561..24719 -
1622815588.6122015-CDS-L-elsbetiae_contig1463:25721..259211622815588.6122015-CDS-L-elsbetiae_contig1463:25721..25921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 25722..25921 -
1691682976.6004853-CDS-L-elsbetiae_contig1463:25721..259211691682976.6004853-CDS-L-elsbetiae_contig1463:25721..25921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1463 25722..25921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1463.3381.1

>prot_L-elsbetiae_contig1463.3381.1 ID=prot_L-elsbetiae_contig1463.3381.1|Name=mRNA_L-elsbetiae_contig1463.3381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=584bp
FVCGACRSAPTVTEISHGQDFHLLPRFAPYLFHNVPGGRLQRGGAGATSA
SSLSNPAEVEYILSLLRDLVTTFPRTNFNGRVGVIAPYRNQIQALRRGMW
HTGLRQDGVDISTVDGFQGREKDIMIFSCVRAPEQSSSWSGGGGVGFLDD
WRRLNVAITRAKYAMWIVGHSGVLKQSKEWRELINDSKKRGAFVDSTSDP
EGPSALRQKGDGARAGSSGARAGSSGARAGSSGARAGPVSLSGSNGRNNG
SSVGGKSSSSRPPSTSDSSSGRSGSSSSRSGGGDRRAGGVARGAWKDETG
TGIPDEPAGTLRAAGRGGGGDGGRGGGDESCLPGRSGAGGLTTGAGAPPK
GAPSSSTPAGPSSTPPATPSPRPSARASGSALAPPPSESAAPFTAPPPLP
PHVWASGQYYTRPTSREHPDATTAGSTDRARFPDTAVGGMMHSGHPDAGD
PGPPGESHRHHLPEKLGGGSRASESDYAGRLGGGSRASESDYARRLGGGS
GGSRASESDYARRLGGGSRASESDYAKRLGGDSRASESDYAGRQGGGSRQ
TRGADYGRLPGDSEPLSSPPPMTRAQEVEARLGG
back to top

mRNA from alignment at L-elsbetiae_contig1463:21669..25921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1463.3381.1 ID=mRNA_L-elsbetiae_contig1463.3381.1|Name=mRNA_L-elsbetiae_contig1463.3381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4253bp|location=Sequence derived from alignment at L-elsbetiae_contig1463:21669..25921- (Laminarionema elsbetiae ELsaHSoW15)
TTTGTGTGTGGCGCCTGCAGATCTGCCCCGACGGTTACGGAGATCTCGCA
CGGGCAGGATTTCCACCTCCTGCCCCGCTTCGCGCCGTACCTGTTCCACA
ACGTTCCGGGCGGGCGGCTGCAGCGGGGAGGCGCGGGGGCGACCTCTGCC
TCGTCGCTTTCGAACCCGGCCGAGGTGGAGTACATCTTGTCGCTCCTCAG
GTGAGTTAATTTTCTTCGCAGTGAGGCGTGTGGTTCGGAACAGGCTGCTA
CTCCTGGGGTAGGGTATGTATGTATTTCGTGTGGGAAATCCCCCAAGTTG
TTTTGCGTATTTTGTCGGTGTCGGCGTTATTTTCGTTACTGTTGTTGTTG
TTGTTGGAGAGGTAGTGGTAGGGGTTGGTGGTCGCTGTAGTGACTGCTGT
GGTGGTGCTGTGAACAGCAGTGCAACGACAGTACAGAAGGTGCCGTCTGC
CGTCTCGAGGCAGCAGTTGGTTGTTCTCTAGGCCTACTGCTGTGCGCATT
TTTCGCTAAATATTGCTTCCGAGCTGTGCTCATGGGTCAGCCGCACCGAG
AGACTTCTGCGTTGATTCAAAGCGCACGCTCGACGCGCACGTTTTGGGTG
TCAGGGGAGGAAGAGGAGGGAGAGGGGGGGGAGATCACGGGTGTAACGAC
GAAAATATACGAAAATCTTCCAAGCGTTTCCCTTTGCCCTTTGCCTTGTC
GATGGTCTGATAAACAGGTGGGTTTTCTCGACACCGTTTCTTCGACACCG
TGCCTGTCGTTTAAATACTTCGAAGTATGTATGTATATCTCGTTGATTTG
ACATCCGGGATCGATACTTCTGATGTCGGCCTCACCACCGGGATCCTCCT
TGCTTGGTTTTGTCGCGTTTCTGTCGTTGCTTTTCGTTTTTGTCGCATTC
TTGTTTTCTTGCCCTCTTTGAGATGGTTGTCCTGCGGCCACGGAAGGCGG
CTTCGCTTGTTGGTTTGACCAGCGCGGGCTGCCAGAATGCAATTACTGGA
GTTGGTTTGCTGGGCAGAAATAGGCACCAGCATGGTTCTTACGCCAAGTC
GGATGTCCGCTAGATCAGCGCGGATGCCAAGGCAGTTAGTTGATGGAGTT
GCTGGTTTTTACGTGGAGGACAGCGGTACAGTAGTCGCGGCCACAATCGA
CCCCACAACTTTCCCACACTCCCACCCAATCGTGCCGCCCGGTGGCCACC
AGAGACCTGGTGACCACTTTTCCCAGGACGAACTTCAATGGGAGGGTAGG
CGTGATCGCGCCTTACCGGAACCAGATCCAGGCTCTTCGAAGGGGTATGT
GGCACACCGGGCTCAGGCAGGATGGGGTGGATATCTCGACGGTGGACGGG
TTTCAGGGGCGGTAAGACGAGACAAGACAGGACAGACAGATATGCAAACA
GAAAGGGCGGACAGATAGACAGGTAGGCAGGTGGGCAGACAAACAGGCAG
GTACCGTAGGTGACATAAGATAAGACACCCCCTGGACCGATTTTCAAAGC
TCAAGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGCGTTG
GAAAGATCTCGTCGAGAGCTGTCCGAAAATGTGGCGTTCGTGGTTAGAAT
CGTATTCGTTGCGGAGGAACCAAGCTTTCAATCTCGGTCCAGGGGGTGTC
GTATCTTATGGCACCTACGGTAGGCAGGCAGGTAGGCTGACAGACAGACA
GGCAGGCAGACAGATATGCAGACAGGCAGACAGACAGACATACATACCGA
CAGGCAGACAGGCAGACATACCGACAGACAGGCAGACATACCGACAGACA
GGCAGACATACCGACAGGCAGACATACGGACAGGCAGACAGGCAGACATA
CCGATAGACAGGCAGACATACCGACAGACAGGCAGACAGAGAGGCCTGCA
TCTGCAAGCGCAAGCATGCCTCGTTTTTTCACCAGCCTTTTGTGGCGTGG
TTGCTGAATGTGTTGCTCGTGTTCCTGCCTGTCGCGTGCCACGTGCGTAC
GTACGTACGGGCGGGTTAGGGGGTTACGTGGTGTGCTTGTTATTGGTGTT
GCCCATCCTGGTTCGGGCAACAGGCACATATGTGTGTACGTGAACGGGAG
GGGGGGGCTCCCTGTGGGCTCCCTCGGGTTAGGGTTAGGGTTAGGGTTAG
GGTTATAACCCTAACTCCCTCGGGCACCTGTTGACACGTACGCCAGTTTT
CGACGCACTGCGAGTTGTGCGAATGCATATGCATGCGCCCACCATGCGCC
AAGTAGTATTTAGCGGGGCTACCCATCCGCCGCGATGTTTAACTGGCTTA
AATCTCCCGGAGTGGCACGCCGTGTGTCGTACAGACGGGCGGACGGGCGT
GCCGTTGACCCTCGTTTTTTTCGACAGTTTTTCTCGGTGTTGCCAGCGTC
TCCCTCCTCTGCATATGTATCTTTGAAATCGCCGCCGCCTTTCATCCCGC
TACACAACTAACTCATTTTTTGCATGGTATTGACCGCGACCCTGCGCTGC
ACCGCGACAGGGAAAAGGACATCATGATTTTCTCCTGCGTGCGCGCTCCC
GAGCAAAGCTCTTCTTGGTCTGGCGGCGGCGGGGTCGGCTTCTTGGACGA
CTGGCGAAGGTTAAACGTCGCCATCACAAGGTGTGCAGTGTGAAAAATCT
CGGCATCTTCTGACGTTTTGGTCCCCGGTCGGTGGTCACCGTTTTGTTTT
CTTCCTTTTTCTTTTGTTCTCACATTCAGTTAGGTGCTAAAGGGTTAGGG
TTAGGGTTAGGGTTAGGTCGACCGGCATCAGCATCGCAAACAGCCTGAAA
GCAGCATTCCGCGCGTCCACAAGCCATTGCCGCCACAACGTGCGCGCGCC
TCTGAGTGCAAGCGCCACACCACTAAAACCCCGGTCAACAACGATTGATC
TTCGATCCCTATCACTAAAACCCCGGTCAACAACGATTGATCTTCGATCC
CTACCTATCCCGTCTCTCTCGTCCCGCTAGGGCAAAGTACGCCATGTGGA
TCGTCGGCCACTCGGGAGTCCTGAAACAAAGCAAGGAGTGGCGGGAGCTT
ATCAACGACTCCAAGAAGCGAGGCGCCTTCGTAGACTCTACAAGTGACCC
CGAAGGCCCTTCCGCTCTCAGGCAAAAAGGGGATGGCGCACGCGCTGGGT
CTAGTGGCGCACGCGCTGGGTCTAGTGGCGCACGCGCTGGGTCTAGTGGC
GCACGCGCTGGTCCTGTTTCTTTGAGTGGCAGCAACGGCAGGAACAACGG
ATCCTCCGTCGGCGGCAAGAGTTCCAGCTCTCGCCCCCCTTCGACAAGCG
ACAGCAGCAGCGGCAGGAGCGGGAGCAGCAGCAGCCGATCTGGCGGTGGC
GACAGACGTGCTGGCGGCGTTGCCCGCGGCGCGTGGAAGGACGAAACCGG
CACCGGCATTCCGGACGAGCCGGCGGGGACCTTGCGTGCTGCCGGCCGCG
GTGGCGGCGGCGATGGTGGGCGTGGTGGGGGTGACGAATCATGTCTTCCC
GGCCGGAGCGGTGCTGGTGGTCTGACGACAGGAGCCGGGGCACCACCAAA
AGGGGCTCCGTCTTCGTCGACGCCAGCCGGGCCATCATCAACACCACCAG
CAACGCCGTCACCACGACCATCCGCGCGAGCTTCGGGGTCAGCACTGGCT
CCACCCCCGTCAGAGTCCGCAGCGCCATTTACAGCGCCACCACCGCTACC
TCCCCACGTCTGGGCTTCGGGGCAGTACTACACCAGGCCAACCTCACGGG
AGCACCCCGACGCAACGACCGCCGGCAGCACGGATCGCGCCCGTTTCCCT
GACACCGCCGTGGGAGGGATGATGCATTCAGGCCATCCCGACGCCGGTGA
CCCCGGACCCCCGGGAGAGAGCCACCGCCACCACCTCCCCGAAAAACTGG
GCGGCGGCTCTCGGGCGTCGGAGTCTGACTACGCGGGAAGACTGGGCGGC
GGCTCGCGGGCGTCGGAGTCTGACTACGCGAGAAGGCTGGGCGGCGGCTC
TGGCGGCTCGCGGGCGTCGGAGTCTGACTACGCGAGGAGACTGGGCGGCG
GCTCTCGGGCGTCGGAGTCTGACTACGCGAAACGACTAGGCGGCGACTCT
CGGGCGTCGGAGTCTGACTACGCGGGAAGACAGGGCGGCGGCTCTCGACA
GACGCGTGGAGCTGATTATGGGAGGCTCCCCGGCGATTCGGAGCCGCTCT
CATCTCCACCGCCGATGACCCGCGCCCAAGAGGTAGAGGCCCGGTTGGGT
GGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1463:21669..25921-

>mRNA_L-elsbetiae_contig1463.3381.1 ID=mRNA_L-elsbetiae_contig1463.3381.1|Name=mRNA_L-elsbetiae_contig1463.3381.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3504bp|location=Sequence derived from alignment at L-elsbetiae_contig1463:21669..25921- (Laminarionema elsbetiae ELsaHSoW15)
TTTGTGTGTGGCGCCTGCAGATCTGCCCCGACGGTTACGGAGATCTCGCA
CGGGCAGGATTTCCACCTCCTGCCCCGCTTCGCGCCGTACCTGTTCCACA
ACGTTCCGGGCGGGCGGCTGCAGCGGGGAGGCGCGGGGGCGACCTCTGCC
TCGTCGCTTTCGAACCCGGCCGAGGTGGAGTACATCTTGTCGCTCCTCAG
TTTGTGTGTGGCGCCTGCAGATCTGCCCCGACGGTTACGGAGATCTCGCA
CGGGCAGGATTTCCACCTCCTGCCCCGCTTCGCGCCGTACCTGTTCCACA
ACGTTCCGGGCGGGCGGCTGCAGCGGGGAGGCGCGGGGGCGACCTCTGCC
TCGTCGCTTTCGAACCCGGCCGAGGTGGAGTACATCTTGTCGCTCCTCAG
AGACCTGGTGACCACTTTTCCCAGGACGAACTTCAATGGGAGGGTAGGCG
TGATCGCGCCTTACCGGAACCAGATCCAGGCTCTTCGAAGGGGTATGTGG
CACACCGGGCTCAGGCAGGATGGGGTGGATATCTCGACGGTGGACGGGTT
TCAGGGGCGAGACCTGGTGACCACTTTTCCCAGGACGAACTTCAATGGGA
GGGTAGGCGTGATCGCGCCTTACCGGAACCAGATCCAGGCTCTTCGAAGG
GGTATGTGGCACACCGGGCTCAGGCAGGATGGGGTGGATATCTCGACGGT
GGACGGGTTTCAGGGGCGGGAAAAGGACATCATGATTTTCTCCTGCGTGC
GCGCTCCCGAGCAAAGCTCTTCTTGGTCTGGCGGCGGCGGGGTCGGCTTC
TTGGACGACTGGCGAAGGTTAAACGTCGCCATCACAAGGGAAAAGGACAT
CATGATTTTCTCCTGCGTGCGCGCTCCCGAGCAAAGCTCTTCTTGGTCTG
GCGGCGGCGGGGTCGGCTTCTTGGACGACTGGCGAAGGTTAAACGTCGCC
ATCACAAGGGCAAAGTACGCCATGTGGATCGTCGGCCACTCGGGAGTCCT
GAAACAAAGCAAGGAGTGGCGGGAGCTTATCAACGACTCCAAGAAGCGAG
GCGCCTTCGTAGACTCTACAAGTGACCCCGAAGGCCCTTCCGCTCTCAGG
CAAAAAGGGGATGGCGCACGCGCTGGGTCTAGTGGCGCACGCGCTGGGTC
TAGTGGCGCACGCGCTGGGTCTAGTGGCGCACGCGCTGGTCCTGTTTCTT
TGAGTGGCAGCAACGGCAGGAACAACGGATCCTCCGTCGGCGGCAAGAGT
TCCAGCTCTCGCCCCCCTTCGACAAGCGACAGCAGCAGCGGCAGGAGCGG
GAGCAGCAGCAGCCGATCTGGCGGTGGCGACAGACGTGCTGGCGGCGTTG
CCCGCGGCGCGTGGAAGGACGAAACCGGCACCGGCATTCCGGACGAGCCG
GCGGGGACCTTGCGTGCTGCCGGCCGCGGTGGCGGCGGCGATGGTGGGCG
TGGTGGGGGTGACGAATCATGTCTTCCCGGCCGGAGCGGTGCTGGTGGTC
TGACGACAGGAGCCGGGGCACCACCAAAAGGGGCTCCGTCTTCGTCGACG
CCAGCCGGGCCATCATCAACACCACCAGCAACGCCGTCACCACGACCATC
CGCGCGAGCTTCGGGGTCAGCACTGGCTCCACCCCCGTCAGAGTCCGCAG
CGCCATTTACAGCGCCACCACCGCTACCTCCCCACGTCTGGGCTTCGGGG
CAGTACTACACCAGGCCAACCTCACGGGAGCACCCCGACGCAACGACCGC
CGGCAGCACGGATCGCGCCCGTTTCCCTGACACCGCCGTGGGAGGGATGA
TGCATTCAGGCCATCCCGACGCCGGTGACCCCGGACCCCCGGGAGAGAGC
CACCGCCACCACCTCCCCGAAAAACTGGGCGGCGGCTCTCGGGCGTCGGA
GTCTGACTACGCGGGAAGACTGGGCGGCGGCTCGCGGGCGTCGGAGTCTG
ACTACGCGAGAAGGCTGGGCGGCGGCTCTGGCGGCTCGCGGGCGTCGGAG
TCTGACTACGCGAGGAGACTGGGCGGCGGCTCTCGGGCGTCGGAGTCTGA
CTACGCGAAACGACTAGGCGGCGACTCTCGGGCGTCGGAGTCTGACTACG
CGGGAAGACAGGGCGGCGGCTCTCGACAGACGCGTGGAGCTGATTATGGG
AGGCTCCCCGGCGATTCGGAGCCGCTCTCATCTCCACCGCCGATGACCCG
CGCCCAAGAGGTAGAGGCCCGGTTGGGTGGAGGCAAAGTACGCCATGTGG
ATCGTCGGCCACTCGGGAGTCCTGAAACAAAGCAAGGAGTGGCGGGAGCT
TATCAACGACTCCAAGAAGCGAGGCGCCTTCGTAGACTCTACAAGTGACC
CCGAAGGCCCTTCCGCTCTCAGGCAAAAAGGGGATGGCGCACGCGCTGGG
TCTAGTGGCGCACGCGCTGGGTCTAGTGGCGCACGCGCTGGGTCTAGTGG
CGCACGCGCTGGTCCTGTTTCTTTGAGTGGCAGCAACGGCAGGAACAACG
GATCCTCCGTCGGCGGCAAGAGTTCCAGCTCTCGCCCCCCTTCGACAAGC
GACAGCAGCAGCGGCAGGAGCGGGAGCAGCAGCAGCCGATCTGGCGGTGG
CGACAGACGTGCTGGCGGCGTTGCCCGCGGCGCGTGGAAGGACGAAACCG
GCACCGGCATTCCGGACGAGCCGGCGGGGACCTTGCGTGCTGCCGGCCGC
GGTGGCGGCGGCGATGGTGGGCGTGGTGGGGGTGACGAATCATGTCTTCC
CGGCCGGAGCGGTGCTGGTGGTCTGACGACAGGAGCCGGGGCACCACCAA
AAGGGGCTCCGTCTTCGTCGACGCCAGCCGGGCCATCATCAACACCACCA
GCAACGCCGTCACCACGACCATCCGCGCGAGCTTCGGGGTCAGCACTGGC
TCCACCCCCGTCAGAGTCCGCAGCGCCATTTACAGCGCCACCACCGCTAC
CTCCCCACGTCTGGGCTTCGGGGCAGTACTACACCAGGCCAACCTCACGG
GAGCACCCCGACGCAACGACCGCCGGCAGCACGGATCGCGCCCGTTTCCC
TGACACCGCCGTGGGAGGGATGATGCATTCAGGCCATCCCGACGCCGGTG
ACCCCGGACCCCCGGGAGAGAGCCACCGCCACCACCTCCCCGAAAAACTG
GGCGGCGGCTCTCGGGCGTCGGAGTCTGACTACGCGGGAAGACTGGGCGG
CGGCTCGCGGGCGTCGGAGTCTGACTACGCGAGAAGGCTGGGCGGCGGCT
CTGGCGGCTCGCGGGCGTCGGAGTCTGACTACGCGAGGAGACTGGGCGGC
GGCTCTCGGGCGTCGGAGTCTGACTACGCGAAACGACTAGGCGGCGACTC
TCGGGCGTCGGAGTCTGACTACGCGGGAAGACAGGGCGGCGGCTCTCGAC
AGACGCGTGGAGCTGATTATGGGAGGCTCCCCGGCGATTCGGAGCCGCTC
TCATCTCCACCGCCGATGACCCGCGCCCAAGAGGTAGAGGCCCGGTTGGG
TGGA
back to top