mRNA_L-elsbetiae_contig14628.3379.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14628.3379.1
Unique NamemRNA_L-elsbetiae_contig14628.3379.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14628.3379.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.690e-30
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:   85 SSGRMAASASALLVALINLLASNGVLAEQVGNLTSLGHGYAMNLTNNSALENPFDDTYFNPASSIEVSADGTGVYVGGELGGLIHLARNAEDGSLTM 375
            S+ R+  SA+A+L  L+ LL + G LA+QVGNLT L  GY++NLT  S+L NPFDDT FNPAS+I VSADGTGVYVGGELGGLIHLAR+ EDGSLTM
Sbjct:    5 SNSRVTVSATAVLGVLVGLLTAEGALAQQVGNLTGLSRGYSVNLTG-SSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTM 100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14628.3379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LME0_ECTSI1.690e-3069.07TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14628contigL-elsbetiae_contig14628:725..2140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D8LME0
KEGG koko:K07767
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.cellular component assembly
EggNOG OGsCOG0457@1,KOG1124@2759
EC3.6.4.3
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons3
Model size375
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14628.3379.1prot_L-elsbetiae_contig14628.3379.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14628 725..2125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.2847912-CDS-L-elsbetiae_contig14628:724..8171622815588.2847912-CDS-L-elsbetiae_contig14628:724..817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 725..817 -
1691682976.3669655-CDS-L-elsbetiae_contig14628:724..8171691682976.3669655-CDS-L-elsbetiae_contig14628:724..817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 725..817 -
1622815588.2995265-CDS-L-elsbetiae_contig14628:1214..13091622815588.2995265-CDS-L-elsbetiae_contig14628:1214..1309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 1215..1309 -
1691682976.3817651-CDS-L-elsbetiae_contig14628:1214..13091691682976.3817651-CDS-L-elsbetiae_contig14628:1214..1309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 1215..1309 -
1622815588.313484-CDS-L-elsbetiae_contig14628:1953..21251622815588.313484-CDS-L-elsbetiae_contig14628:1953..2125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 1954..2125 -
1691682976.392307-CDS-L-elsbetiae_contig14628:1953..21251691682976.392307-CDS-L-elsbetiae_contig14628:1953..2125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14628 1954..2125 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.324961-UTR-L-elsbetiae_contig14628:2125..21401622815588.324961-UTR-L-elsbetiae_contig14628:2125..2140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14628 2126..2140 -
1691682976.4020386-UTR-L-elsbetiae_contig14628:2125..21401691682976.4020386-UTR-L-elsbetiae_contig14628:2125..2140Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14628 2126..2140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14628.3379.1

>prot_L-elsbetiae_contig14628.3379.1 ID=prot_L-elsbetiae_contig14628.3379.1|Name=mRNA_L-elsbetiae_contig14628.3379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MHRRAVRGGYGSFGASGAGFRCCSSGRMAASASALLVALINLLASNGVLA
EQVGNLTSLGHGYAMNLTNNSALENPFDDTYFNPASSIEVSADGTGVYVG
GELGGLIHLARNAEDGSLTM
back to top

mRNA from alignment at L-elsbetiae_contig14628:725..2140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14628.3379.1 ID=mRNA_L-elsbetiae_contig14628.3379.1|Name=mRNA_L-elsbetiae_contig14628.3379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig14628:725..2140- (Laminarionema elsbetiae ELsaHSoW15)
CGAGAGAGGGTTTATATGCACCGCCGTGCTGTTCGTGGAGGGTATGGTAG
TTTCGGAGCAAGTGGTGCTGGTTTCAGGTGCTGCAGCAGTGGCAGGATGG
CAGCCTCGGCCTCGGCGTTGCTCGTCGCGCTGATTAATTTGCTCGCGTCG
AATGGGGTTCTGGCGGAACAAGTCGGAAATCTCACATGTGAGAGGAGTTA
ACGCAAGAGATAAGGCATGTTGGACACGGGTGTAGCGGCACATCATGCAT
AATTTGTGGGCCCACGCGCAAGGTGCACGTGTGAGCACCAACCGCACCTA
TGGTACTAAAGAATAGGGAGCCTGCTCGTATTTATCAGTTGGTCGCACTC
AAAGCATTTCCCTCTCGTTGATGTAGTCTGGGCTGGCCGTAGTGGGGCCG
CGGGCGTGCGCGATTGTGATCATGTGGAGATGCGTATTTGTTTCGTGCGT
TGGCTTACCACGAGTGCCACAAGCGGAGCGTTCGCCCAGAGCTAAATAGT
GTTAAAATAAAAGATGACACACGCTCAAGCGATTTACTCCGTATCTCTCT
ACACCGTTGTGATGAAGACCCTCACTAGAGAAAGGCAATTTCATTCGCCA
ACTAGTTAGCGTTCTCGCTCGCATGCATAATGTGCAAGATCTTCCCGCCT
CGCTCGCCCGCTCCCGCTACAAGATAGACCTCCTATTCGCCGGTCGGAGC
CCTTTCCGTACATCTCTGCTGCTCACGTAGTAGTCTAGTGCTTCGTTATA
CTTTATGCCCTTGGTTCGTTTTGTGTAATGTAACATCGTTCGCGGAACTG
CTTGGGCGCTGCGTTCGTTTTTTCTGCGCAGCCCTGGGGCACGGGTACGC
AATGAATCTCACCAATAATTCCGCGCTGGAGAACCCATTTGACGACACAT
ATTTCAACCCAGCTTCTTCGATTGAGGTGAGGAAAACAGGGGAAGAAAAC
AGGATTCATCGCTTGGTTGAACAGCTTCCGATAAAGCAAGTTTGGCTCAC
ATTTATTTTTCAGTCTGCCTCCATAGATATATAGTCTAGGCAAGGTGGGG
TGACAAGCTCCGCCGGCGAGTCTGACGCCGGCGCACTGTCTCCTCTACGC
GTGCGCCTGGGCCTCAGCGCGATAGATAAGCCAAGCTGTTGCACCAGCCT
GCGGCGGTAGTTCACCCGCCCGTCCCTTGATCATCCCGCCCAAAATACGT
CAATGCCCAGGCAATCAACGCAACCCACGAAATCCGAAATGCGTGCTACC
AATGGTTTCGCTATCCTAATAAGCATACGCCCCCATGTCACTCTGCTCCC
CGCGGCGGCAACGGCGATAAAAGGTGTCCGCGGACGGGACCGGCGTGTAC
GTCGGAGGGGAGCTTGGTGGGCTGATTCACCTGGCCAGGAACGCGGAAGA
CGGGTCGCTTACGATG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14628:725..2140-

>mRNA_L-elsbetiae_contig14628.3379.1 ID=mRNA_L-elsbetiae_contig14628.3379.1|Name=mRNA_L-elsbetiae_contig14628.3379.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig14628:725..2140- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACCGCCGTGCTGTTCGTGGAGGGTATGGTAGTTTCGGAGCAAGTGG
TGCTGGTTTCAGGTGCTGCAGCAGTGGCAGGATGGCAGCCTCGGCCTCGG
CGTTGCTCGTCGCGCTGATTAATTTGCTCGCGTCGAATGGGGTTCTGGCG
GAACAAGTCGGAAATCTCACATATGCACCGCCGTGCTGTTCGTGGAGGGT
ATGGTAGTTTCGGAGCAAGTGGTGCTGGTTTCAGGTGCTGCAGCAGTGGC
AGGATGGCAGCCTCGGCCTCGGCGTTGCTCGTCGCGCTGATTAATTTGCT
CGCGTCGAATGGGGTTCTGGCGGAACAAGTCGGAAATCTCACATCCCTGG
GGCACGGGTACGCAATGAATCTCACCAATAATTCCGCGCTGGAGAACCCA
TTTGACGACACATATTTCAACCCAGCTTCTTCGATTGAGCCCTGGGGCAC
GGGTACGCAATGAATCTCACCAATAATTCCGCGCTGGAGAACCCATTTGA
CGACACATATTTCAACCCAGCTTCTTCGATTGAGGTGTCCGCGGACGGGA
CCGGCGTGTACGTCGGAGGGGAGCTTGGTGGGCTGATTCACCTGGCCAGG
AACGCGGAAGACGGGTCGCTTACGATGGTGTCCGCGGACGGGACCGGCGT
GTACGTCGGAGGGGAGCTTGGTGGGCTGATTCACCTGGCCAGGAACGCGG
AAGACGGGTCGCTTACGATG
back to top