mRNA_L-elsbetiae_contig1462.3376.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1462.3376.1
Unique NamemRNA_L-elsbetiae_contig1462.3376.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1462.3376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1462contigL-elsbetiae_contig1462:6317..7854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size272
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1462.3376.1prot_L-elsbetiae_contig1462.3376.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1462 6318..7470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.8835852-UTR-L-elsbetiae_contig1462:6316..63171622815587.8835852-UTR-L-elsbetiae_contig1462:6316..6317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 6317..6317 -
1691682976.1546898-UTR-L-elsbetiae_contig1462:6316..63171691682976.1546898-UTR-L-elsbetiae_contig1462:6316..6317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 6317..6317 -
1622815587.9165633-UTR-L-elsbetiae_contig1462:7470..74781622815587.9165633-UTR-L-elsbetiae_contig1462:7470..7478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 7471..7478 -
1691682976.183815-UTR-L-elsbetiae_contig1462:7470..74781691682976.183815-UTR-L-elsbetiae_contig1462:7470..7478Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 7471..7478 -
1622815587.9302063-UTR-L-elsbetiae_contig1462:7765..78541622815587.9302063-UTR-L-elsbetiae_contig1462:7765..7854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 7766..7854 -
1691682976.1922922-UTR-L-elsbetiae_contig1462:7765..78541691682976.1922922-UTR-L-elsbetiae_contig1462:7765..7854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1462 7766..7854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.893352-CDS-L-elsbetiae_contig1462:6317..63891622815587.893352-CDS-L-elsbetiae_contig1462:6317..6389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1462 6318..6389 -
1691682976.1646314-CDS-L-elsbetiae_contig1462:6317..63891691682976.1646314-CDS-L-elsbetiae_contig1462:6317..6389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1462 6318..6389 -
1622815587.9034402-CDS-L-elsbetiae_contig1462:7368..74701622815587.9034402-CDS-L-elsbetiae_contig1462:7368..7470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1462 7369..7470 -
1691682976.175511-CDS-L-elsbetiae_contig1462:7368..74701691682976.175511-CDS-L-elsbetiae_contig1462:7368..7470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1462 7369..7470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1462.3376.1

>prot_L-elsbetiae_contig1462.3376.1 ID=prot_L-elsbetiae_contig1462.3376.1|Name=mRNA_L-elsbetiae_contig1462.3376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
MRTYGSGSSGGGGGKMELFASWRADELSDGGRQERWEDDVSRSQGGSVLR
GPGLGSV*
back to top

mRNA from alignment at L-elsbetiae_contig1462:6317..7854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1462.3376.1 ID=mRNA_L-elsbetiae_contig1462.3376.1|Name=mRNA_L-elsbetiae_contig1462.3376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1538bp|location=Sequence derived from alignment at L-elsbetiae_contig1462:6317..7854- (Laminarionema elsbetiae ELsaHSoW15)
CGACAACACAACATCGCAACGCGAAGAGCGATCATCCCAACATCCAGTAG
GAGTCACCATCGTCATACTACACACCATCGACGGGGAAGGTGCATCGATG
TTTTGCGTGAGCGCGGTTTCGTCGAGCGAAACAGCAAGATGAGCAATGTC
TGTTGATATTGTGTATACCCCCCGAATTTGAGGTTGGTTCGTATGCAGTA
CTACAGTACAGTACAACTGTAAGAGAGATCCATTTATGTACCTAGAGTTG
GGCGGCAGAAACAACGAAGGGATGGGGGATATAACCGACCTTTCGTGTGT
GCTCGCTTCGAGACCCAAGGGATATCTTTTCATTCTCAAAAAGGATCCCC
ACGATGTTAATTCCATTTTTCTCCAGGGTCGCACATGCGAACGTACGGTA
GCGGCAGCAGTGGCGGCGGCGGTGGCAAGATGGAATTGTTCGCTTCGTGG
AGGGCTGACGAGCTATCAGATGGCGGCCGGCAAGAGGTGAGTCAGACGCC
GCTCCCTGTGTTGTTGTTGTTTGTTGTTGATTCTTCACATTAAAAACTGT
TCCGATCTCTCCACTCAGTACCTCCCTATGTCCGTACAATCCAACACTTG
ATGCGGTCAATTCCCGTGGTCACAGGATAACGTATACCTAAAGGTATACG
AAAATAAAAATGGACCCGAAGGGTCAGCACGCGATAAAAATCAAAGACAA
ATAGTGTGGAGCCCTTCGCTCCCCTCTACACGCTATGCGAGGTAAAAAAA
CGAAATTGAACAAACCAACATCACCAACCGGGGGTATACACCCCCCTGGT
TCTATCTTGGTACCACAACAATGCCAGGGTGTTCCGTGCTGGGTTCTCGC
CGGTCAGACCCAAAGATCTATAGTCCTCCCCGCCGAATTGTGAACTAGCG
CCTAAGATATGTCGACGTTGACAAGCAGTCACAGCAGTAGGCATGTACCA
ACTCGTCCAGGGTGCGAACCCCCGTTAATGAGACCAAAGTTTATTTCAGC
TGGAAACACGGTCGAGGTCAAGGCCGGCACACGTTTCGGTTCTCCTCTTC
TCCCTCCCTCTCCCTCCCTCTCTTTTTTCTCCTTCACACATCCACGCGGT
GGTTGGTAGTTGCTCACATGGATGCCGTATTATGCTCGCCCTTTTGAAAA
CCACAACAAGCTAGTACTAAATAGTGGATAGTATTTTTGGAGTAGGTCTG
CCGAGAAACCGAGTTACTGTAGCCTTCATTTTTGTGCACTTTGGACGTGG
CTCGTATCGTTTAGATGGTATTAGTTCGCATATCAGTAGTCTTACCCTTT
TTTGGGCAAGTTATTCTGTGACCACGGGAATCGACCGCGTCAGTGTTGGA
ATAGTACGGACTCATGGAGGTTTACTGGATAGAGAGATCGGAACGGGTTT
TAATGTGAAGACAACAGCAACAATGGACGGCATGTCCCCATTGTTCCGTC
ATTATATCCTCGCAGCGCTGGGAGGACGATGTATCGAGGAGCCAGGGAGG
ATCGGTCTTGCGCGGACCAGGGCTTGGCTCTGTGTGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1462:6317..7854-

>mRNA_L-elsbetiae_contig1462.3376.1 ID=mRNA_L-elsbetiae_contig1462.3376.1|Name=mRNA_L-elsbetiae_contig1462.3376.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig1462:6317..7854- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAACGTACGGTAGCGGCAGCAGTGGCGGCGGCGGTGGCAAGATGGA
ATTGTTCGCTTCGTGGAGGGCTGACGAGCTATCAGATGGCGGCCGGCAAG
AGATGCGAACGTACGGTAGCGGCAGCAGTGGCGGCGGCGGTGGCAAGATG
GAATTGTTCGCTTCGTGGAGGGCTGACGAGCTATCAGATGGCGGCCGGCA
AGAGCGCTGGGAGGACGATGTATCGAGGAGCCAGGGAGGATCGGTCTTGC
GCGGACCAGGGCTTGGCTCTGTGTGACGCTGGGAGGACGATGTATCGAGG
AGCCAGGGAGGATCGGTCTTGCGCGGACCAGGGCTTGGCTCTGTGTGA
back to top