mRNA_L-elsbetiae_contig14610.3370.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14610.3370.1
Unique NamemRNA_L-elsbetiae_contig14610.3370.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.350e-12
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = -1 
Query:   37 QDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQKNQLISSTHHADIA 186
            +DVERVR LLANAPADRAW RRGYL++CR  PD+  + ++ S TH+ ++A
Sbjct:  299 EDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVA 348
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: A0A6H5JMJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMJ6_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.740e-8
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -1 
Query:   85 SGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDK 195
            SG QD +RVR LL NA ADRAWHRR YLVLCRTHPD+
Sbjct:  138 SGEQD-DRVRDLLVNAQADRAWHRRRYLVLCRTHPDR 173
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.850e-8
Identity = 30/49 (61.22%), Postives = 33/49 (67.35%), Query Frame = -1 
Query:   79 DRTGDRRKRPSGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQ 225
            D  G RR   +  +D ER R LLA APADRAW RRG LVLCR HPD+ Q
Sbjct:  315 DSIGTRRCHRTDPEDDERARSLLARAPADRAWRRRGLLVLCRAHPDRLQ 363
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: D7G2K5_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.170e-7
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = -1 
Query:   28 DVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQKNQLISSTHHADIALGG 183
            +++RVR LL NAPADRAW RRG+LVLCR  PD+  +N + ++T  A  A+ G
Sbjct:  250 NLKRVRDLLHNAPADRAWRRRGFLVLCRAFPDRMHQN-VGNNTPTAHAAVAG 300
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.510e-7
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = -1 
Query:   58 PSGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQKNQLISS 198
            P  +QDVERVR LL NAP DRAW RRG+LVLCR    K ++ +  SS
Sbjct:  259 PLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASS 305
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.220e-6
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = -1 
Query:   55 PSGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQKNQLISST 198
            P  +QD+ERVR LL NAPADRAW RRG LVLCR    K ++ +  SS+
Sbjct:  308 PLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAFWIKSRRLRAASSS 355
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.120e-6
Identity = 28/49 (57.14%), Postives = 31/49 (63.27%), Query Frame = -1 
Query:   79 DRTGDRRKRPSGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQ 225
            DR G RR   +   D ER R LL  APADRAW RRG LVLC  +PD+ Q
Sbjct:  311 DRIGTRRFPSTEPGDDERARSLLTRAPADRAWRRRGLLVLCHAYPDRLQ 359
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: A0A6H5JFR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 8.670e-6
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = -1 
Query:   37 DVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQKNQLISSTHHADIA 183
            D ERV  LL NAPADRAW RRG+L+LCR +P+ R   +L SS+   D A
Sbjct:  209 DAERVYKLLRNAPADRAWRRRGFLLLCRAYPE-RVPPRLDSSSTLVDAA 256
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: A0A6H5KFY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.570e-5
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = -1 
Query:   79 SGRQDVERVR*LLANAPADRAWHRRGYLVLCRTHPDKRQ 195
            + RQ +ERV  LLA AP DRAW RRG+LV C +HPD+ Q
Sbjct:  209 ASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPDRVQ 247
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BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Match: D7G2A3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.750e-5
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = -1 
Query:   85 ERVR*LLANAPADRAWHRRGYLVLCRTHPDK 177
            ER+  LLA AP DRAW RRG+LVLCR HPD+
Sbjct:  361 ERISKLLARAPQDRAWRRRGFLVLCRAHPDR 391
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14610.3370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE2.350e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMJ6_9PHAE1.740e-878.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI3.850e-861.22Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G2K5_ECTSI6.170e-753.85EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G6X8_ECTSI6.510e-759.57Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KNU3_9PHAE1.220e-658.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G137_ECTSI4.120e-657.14Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JFR1_9PHAE8.670e-657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFY7_9PHAE2.570e-561.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A3_ECTSI2.750e-570.97Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14610contigL-elsbetiae_contig14610:453..780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.7241166-CDS-L-elsbetiae_contig14610:452..7791622815587.7241166-CDS-L-elsbetiae_contig14610:452..779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14610 453..779 +
1691682976.0877104-CDS-L-elsbetiae_contig14610:452..7791691682976.0877104-CDS-L-elsbetiae_contig14610:452..779Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14610 453..779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14610.3370.1prot_L-elsbetiae_contig14610.3370.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14610 453..779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14610.3370.1

>prot_L-elsbetiae_contig14610.3370.1 ID=prot_L-elsbetiae_contig14610.3370.1|Name=mRNA_L-elsbetiae_contig14610.3370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
LTFSWQSHASTQCYVGVMGAADQLVLLPLVRVSTAQNQVASAMPRPIGGS
VGQQLTHALDILAARRPFSSIPRSIISDAVNSSSSRLVSFASALNRESTT
SVALCVPAK
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mRNA from alignment at L-elsbetiae_contig14610:453..780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14610.3370.1 ID=mRNA_L-elsbetiae_contig14610.3370.1|Name=mRNA_L-elsbetiae_contig14610.3370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=328bp|location=Sequence derived from alignment at L-elsbetiae_contig14610:453..780+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGTTTTCCTGGCAATCACACGCTTCCACCCAATGCTATGTCGGCGT
GATGGGTGCTGCTGATCAACTGGTTCTTCTGCCTCTTGTCCGGGTGAGTA
CGGCACAAAACCAGGTAGCCTCGGCGATGCCACGCCCTATCGGCGGGAGC
GTTGGCCAGCAGTTAACGCACGCGCTCGACATCCTGGCGGCCAGACGGCC
GTTTTCTTCTATCCCCCGTTCGATCATATCCGACGCTGTGAATTCTTCGT
CGTCAAGGCTTGTATCATTTGCATCTGCCCTCAACAGAGAGTCCACCACT
TCCGTAGCTCTTTGTGTCCCGGCGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14610:453..780+

>mRNA_L-elsbetiae_contig14610.3370.1 ID=mRNA_L-elsbetiae_contig14610.3370.1|Name=mRNA_L-elsbetiae_contig14610.3370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig14610:453..780+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGTTTTCCTGGCAATCACACGCTTCCACCCAATGCTATGTCGGCGT
GATGGGTGCTGCTGATCAACTGGTTCTTCTGCCTCTTGTCCGGGTGAGTA
CGGCACAAAACCAGGTAGCCTCGGCGATGCCACGCCCTATCGGCGGGAGC
GTTGGCCAGCAGTTAACGCACGCGCTCGACATCCTGGCGGCCAGACGGCC
GTTTTCTTCTATCCCCCGTTCGATCATATCCGACGCTGTGAATTCTTCGT
CGTCAAGGCTTGTATCATTTGCATCTGCCCTCAACAGAGAGTCCACCACT
TCCGTAGCTCTTTGTGTCCCGGCGAAACTGACGTTTTCCTGGCAATCACA
CGCTTCCACCCAATGCTATGTCGGCGTGATGGGTGCTGCTGATCAACTGG
TTCTTCTGCCTCTTGTCCGGGTGAGTACGGCACAAAACCAGGTAGCCTCG
GCGATGCCACGCCCTATCGGCGGGAGCGTTGGCCAGCAGTTAACGCACGC
GCTCGACATCCTGGCGGCCAGACGGCCGTTTTCTTCTATCCCCCGTTCGA
TCATATCCGACGCTGTGAATTCTTCGTCGTCAAGGCTTGTATCATTTGCA
TCTGCCCTCAACAGAGAGTCCACCACTTCCGTAGCTCTTTGTGTCCCGGC
GAAA
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