mRNA_L-elsbetiae_contig1460.3361.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1460.3361.1
Unique NamemRNA_L-elsbetiae_contig1460.3361.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1460.3361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1460contigL-elsbetiae_contig1460:15370..16349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.8239806-CDS-L-elsbetiae_contig1460:15371..155211622815586.8239806-CDS-L-elsbetiae_contig1460:15371..15521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1460 15372..15521 -
1691682975.551312-CDS-L-elsbetiae_contig1460:15371..155211691682975.551312-CDS-L-elsbetiae_contig1460:15371..15521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1460 15372..15521 -
1622815586.8363383-CDS-L-elsbetiae_contig1460:16187..163491622815586.8363383-CDS-L-elsbetiae_contig1460:16187..16349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1460 16188..16349 -
1691682975.5621083-CDS-L-elsbetiae_contig1460:16187..163491691682975.5621083-CDS-L-elsbetiae_contig1460:16187..16349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1460 16188..16349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1460.3361.1prot_L-elsbetiae_contig1460.3361.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1460 15372..16349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1460.3361.1

>prot_L-elsbetiae_contig1460.3361.1 ID=prot_L-elsbetiae_contig1460.3361.1|Name=mRNA_L-elsbetiae_contig1460.3361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
SSRNNSSNGRKSNIACSEKKKFSDYTLIAAVQVLLGREPGTTTSRRVTFN
TVFEVNYVDKCQTLYPPTLEGNEMKRQAFWSKRETEDNQFKWDGHLETYE
LERN
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mRNA from alignment at L-elsbetiae_contig1460:15370..16349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1460.3361.1 ID=mRNA_L-elsbetiae_contig1460.3361.1|Name=mRNA_L-elsbetiae_contig1460.3361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=980bp|location=Sequence derived from alignment at L-elsbetiae_contig1460:15370..16349- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGGAACAACAGCAGCAACGGCAGGAAGAGCAATATCGCATGTTC
GGAAAAGAAGAAGTTCAGCGACTACACGTTGATAGCGGCGGTCCAAGTCC
TGCTCGGAAGAGAGCCCGGCACCACCACCAGCAGAAGGGTTACATTCAAC
ACCGTATTTGAGGTGGGTTGACACGTTGCGATAGACCATATCTACATGTT
TCAATCGTAGCGCACCTACATCTACGGCATCGAATGACGTAAACCGAAAC
ACCACAATACAATCGCAAACCCCGTTCGAAACCTAAACTACAGAAAAGTG
GAAAATTTGGGGGGGGGGGGGACACGGGGGCGGGCGGTAAAGATGATTCG
GGTGGGTTGTCCTGTCTAACACAACAGCGCGTTCTGAGTGGCTGGTAGCA
CAAACGACACGAGGTTGCCGCGAACAGCCGTGAGAGACCTTGATTTCTCG
CAAATCAACAACGAAGGCTAGAACCCACGAACGACCTTTCCGTTTCTCCT
GTTCCTACAGCGCCAGCCCTTGATGATTGTAGAGCTTTTCGCTGCCAATA
CGAACCTACATCCTGGGCGAACAGCCCAACAACTTGTTTGAGGGTAGACA
GGTGTCGGGTTGGGGTTCACCCGCTGCACCTCGCCGTTCCATTTCACGCC
GACAAATATTGGACTATAAAACAGATCGTCTACAAATGATTCATTGACCA
TCCCCTCTTCATTTGTTTTCGAGAGATTCGAAAACGCAAAAAAACAACTG
CCGACAGCGATGTTCTTGTCTTTTGTTCGTGACCACTTCTACTTGTGCTC
GCCCGCGACCCCAAAAAATCAATCTCAGGTCAACTACGTCGATAAGTGCC
AGACGCTCTACCCCCCGACCCTCGAAGGCAACGAGATGAAACGACAAGCG
TTCTGGTCTAAGCGCGAGACCGAAGACAACCAGTTCAAGTGGGATGGCCA
CTTGGAGACGTACGAGTTGGAGAGGAACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1460:15370..16349-

>mRNA_L-elsbetiae_contig1460.3361.1 ID=mRNA_L-elsbetiae_contig1460.3361.1|Name=mRNA_L-elsbetiae_contig1460.3361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1460:15370..16349- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCAGGAACAACAGCAGCAACGGCAGGAAGAGCAATATCGCATGTTC
GGAAAAGAAGAAGTTCAGCGACTACACGTTGATAGCGGCGGTCCAAGTCC
TGCTCGGAAGAGAGCCCGGCACCACCACCAGCAGAAGGGTTACATTCAAC
ACCGTATTTGAGAGCAGCAGGAACAACAGCAGCAACGGCAGGAAGAGCAA
TATCGCATGTTCGGAAAAGAAGAAGTTCAGCGACTACACGTTGATAGCGG
CGGTCCAAGTCCTGCTCGGAAGAGAGCCCGGCACCACCACCAGCAGAAGG
GTTACATTCAACACCGTATTTGAGGTCAACTACGTCGATAAGTGCCAGAC
GCTCTACCCCCCGACCCTCGAAGGCAACGAGATGAAACGACAAGCGTTCT
GGTCTAAGCGCGAGACCGAAGACAACCAGTTCAAGTGGGATGGCCACTTG
GAGACGTACGAGTTGGAGAGGAACGTCAACTACGTCGATAAGTGCCAGAC
GCTCTACCCCCCGACCCTCGAAGGCAACGAGATGAAACGACAAGCGTTCT
GGTCTAAGCGCGAGACCGAAGACAACCAGTTCAAGTGGGATGGCCACTTG
GAGACGTACGAGTTGGAGAGGAAC
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