mRNA_L-elsbetiae_contig14598.3351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14598.3351.1
Unique NamemRNA_L-elsbetiae_contig14598.3351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: D7FRQ6_ECTSI (Putative methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRQ6_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 9.570e-76
Identity = 136/255 (53.33%), Postives = 149/255 (58.43%), Query Frame = 1
Query:    1 PISSHTQDAYVQAVEFVRNFHHARVGNGTAAVVLCQEDQHDDQDTKIGEEVSCVQQQQHRQHIPLPVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGK-------------------------------------------------------PLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAVLAINDEAE 600
            PISSHTQ AY  AV+FV  FH +                                 Q+ +Q  PLPVVLDSGCGTGRSS LLA+SYPHLPV+GIDRSA RLSKGGG  GK                                                       PLP NLLLLRADLVDLWILASR+NAW+++EH ILYPNPYPKRSQLRSRWHGHSVFPVLLSLGG ITLRSNW++YLDEVCQAVLAIN  A+
Sbjct:   33 PISSHTQAAYRHAVDFVLAFHRSP--------------------------------QEQQQRSPLPVVLDSGCGTGRSSVLLARSYPHLPVIGIDRSAVRLSKGGGDAGKRVEEHMHQHNSSTRQAGAEQGRNDRVDARRAHGSSGEKNRPPLQKKGNRDNRLREPLPENLLLLRADLVDLWILASRENAWEIKEHYILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGVITLRSNWRTYLDEVCQAVLAINGAAQ 255          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A2Z2H6M7_9GAMM (SAM-dependent methyltransferase n=1 Tax=Kushneria konosiri TaxID=698828 RepID=A0A2Z2H6M7_9GAMM)

HSP 1 Score: 158 bits (399), Expect = 4.510e-45
Identity = 78/136 (57.35%), Postives = 93/136 (68.38%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAVLAINDEAEK 603
            P++LD+GCGTGRS+  LA  YPH  VLGIDRSA RLS+         P N LL+RADLVD W LA     W+   HCI YPNPYPK SQL+ RWH H VFPV+L+LGGR+ LRSNW+ Y++E   AV  I  +A K
Sbjct:   56 PLILDAGCGTGRSTRHLAGEYPHACVLGIDRSADRLSRDYTRELGDFPDNALLVRADLVDFWRLAHLAG-WRPERHCIFYPNPYPKASQLKRRWHAHPVFPVVLALGGRLELRSNWQIYVEEFACAVEQITGQAPK 190          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A0B4XNW9_9GAMM (Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A0B4XNW9_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 5.110e-44
Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEV 564
            P+VLDSGCGTGRSS  LA  YP   V+G+D+S  RL +G      PLP NLLLLRA+  D W LA  +  W+VREHC+ YPNP+PK + LR RWHGH VFPVLL LGG++ LRSNW  YL+E+
Sbjct:   58 PLVLDSGCGTGRSSVWLAGHYPEALVIGLDQSGERLRRGH-LRFDPLPANLLLLRAEAADFWRLAV-EAGWRVREHCLFYPNPWPKSAHLRRRWHGHPVFPVLLQLGGQLRLRSNWPVYLEEM 178          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: UPI000DBA2FDA (methyltransferase domain-containing protein n=1 Tax=Alcanivorax indicus TaxID=2202653 RepID=UPI000DBA2FDA)

HSP 1 Score: 152 bits (385), Expect = 4.480e-43
Identity = 73/130 (56.15%), Postives = 94/130 (72.31%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAVLAI 585
            P++LDSGCGTGRSS LLA+ +P   V+G+D+SA RL++ G  P      NLLLLRA+  D W LA  +  WQ+  H +LYPNP+PK + L+ RWHGH VFP +L+LGGR+TLRSNW  YL E+ QA LA+
Sbjct:   57 PLILDSGCGTGRSSRLLAQRHPEARVIGLDQSAHRLARSGSGPD-----NLLLLRAECADFWRLAE-EAGWQLEAHYLLYPNPWPKAAHLKRRWHGHPVFPTMLALGGRLTLRSNWGLYLQEM-QAALAL 179          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A5B8SSD4_9GAMM (Methyltransferase domain-containing protein n=1 Tax=Pistricoccus aurantiacus TaxID=1883414 RepID=A0A5B8SSD4_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 1.120e-42
Identity = 73/126 (57.94%), Postives = 89/126 (70.63%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQA 573
            P +LD+GCG G S+  LA+ +P   V+GIDRSA RLS+  G P    P N+LL+RADLVD W LA  D  W+ R H +LYPNPYPK S L+ RWHGH VFP LL+LGGR+ LRSNW+ YL+E   A
Sbjct:   56 PPILDAGCGVGLSTRALARRFPDRAVIGIDRSADRLSRRHGEP----PGNVLLVRADLVDFWRLAL-DAGWRPRRHYLLYPNPYPKASHLKQRWHGHPVFPTLLALGGRLELRSNWRLYLEEFALA 176          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A240UM28_9GAMM (SAM-dependent methyltransferase n=1 Tax=Kushneria marisflavi TaxID=157779 RepID=A0A240UM28_9GAMM)

HSP 1 Score: 152 bits (383), Expect = 1.260e-42
Identity = 73/127 (57.48%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAV 576
            P++LD+GCGTGRS+  LA+ YP+  VLGIDRSA RLS+         P N LL+RADLVD W LA     W+   HCI YPNPYPK SQL+ RWH H VFPV+L+LGG + LRSNW+ Y++E   AV
Sbjct:   56 PLILDAGCGTGRSTRRLARDYPNACVLGIDRSADRLSRDYTRELGDFPDNALLVRADLVDFWRLAHLAG-WRPERHCIFYPNPYPKASQLKRRWHAHPVFPVILALGGVLELRSNWQIYVEEFACAV 181          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: UPI001679E76A (class I SAM-dependent methyltransferase n=1 Tax=Kushneria pakistanensis TaxID=1508770 RepID=UPI001679E76A)

HSP 1 Score: 152 bits (383), Expect = 1.580e-42
Identity = 74/127 (58.27%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAV 576
            P++LD+GCGTGRS+  LA+ YP   VLGIDRSA RLS+         P N  LLRADL+D W LA     WQ   HCI YPNPYPK SQL+ RWH H VFPVLL+LGG + LRSNW+ Y++E   AV
Sbjct:   56 PLILDAGCGTGRSTRQLARYYPKACVLGIDRSADRLSRDYTRELGAFPDNARLLRADLIDFWRLAHAAG-WQPIRHCIFYPNPYPKASQLKKRWHAHPVFPVLLALGGELELRSNWQIYVEEFACAV 181          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A1I1LSY7_9GAMM (tRNA G46 methylase TrmB n=1 Tax=Kushneria avicenniae TaxID=402385 RepID=A0A1I1LSY7_9GAMM)

HSP 1 Score: 150 bits (380), Expect = 4.450e-42
Identity = 72/127 (56.69%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAV 576
            P++LD+GCGTGRS+  LA  +    VLGIDRSA RLS+         P N LL+RADLVD W LA     WQ   HC+ YPNPYPK SQL+ RWH H VFPVLL+LGG + LRSNW+ Y++E  QA+
Sbjct:   56 PLILDAGCGTGRSTRQLAHHHSQACVLGIDRSADRLSRDYSRELGAFPDNALLVRADLVDFWRLAHLAG-WQPMRHCLFYPNPYPKASQLKRRWHAHPVFPVLLALGGALELRSNWRIYVEEFAQAI 181          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: UPI00198FBDA8 (Uncharacterized protein n=2 Tax=Halomonas qijiaojingensis TaxID=980347 RepID=UPI00198FBDA8)

HSP 1 Score: 150 bits (379), Expect = 6.830e-42
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1
Query:  193 LPVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAV 576
            LP++LD+GCG G S+  LA+ YP   V+G+DRSA RLS+  G     LP N LL+RADLVD W LA     W+   H +LYPNPYPK + L+ RWHGH VFPV+L+LGGR+ LRSNW+ Y++E C A+
Sbjct:   69 LPLILDAGCGVGLSTRALARQYPGHAVIGVDRSADRLSREHGN----LPDNALLVRADLVDFWRLALAAG-WRPERHFLLYPNPYPKAAHLKMRWHGHPVFPVILALGGRLELRSNWRLYVEEFCLAL 191          
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Match: A0A7V7KGH6_9GAMM (Methyltransferase domain-containing protein n=2 Tax=Halomonas TaxID=2745 RepID=A0A7V7KGH6_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 8.410e-42
Identity = 72/127 (56.69%), Postives = 92/127 (72.44%), Query Frame = 1
Query:  196 PVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAARLSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYPKRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAV 576
            P++LD+GCG G S+  LA+ YP   V+G+DRSAARLS+  GA    +  N LL+RADLVD W LA  +  WQ   H +LYPNPYPK ++L+ RWHGH VFPVLL+LGGR+ LRSNW+ YL+E   A+
Sbjct:   60 PLILDAGCGVGLSTRRLAERYPDHAVIGVDRSAARLSRDHGA----IADNALLVRADLVDFWRLAL-EAGWQPARHYLLYPNPYPKSARLKLRWHGHPVFPVLLALGGRLELRSNWRLYLEEFALAL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14598.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ6_ECTSI9.570e-7653.33Putative methyltransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A2Z2H6M7_9GAMM4.510e-4557.35SAM-dependent methyltransferase n=1 Tax=Kushneria ... [more]
A0A0B4XNW9_9GAMM5.110e-4460.16Methyltransferase n=2 Tax=Alcanivorax TaxID=59753 ... [more]
UPI000DBA2FDA4.480e-4356.15methyltransferase domain-containing protein n=1 Ta... [more]
A0A5B8SSD4_9GAMM1.120e-4257.94Methyltransferase domain-containing protein n=1 Ta... [more]
A0A240UM28_9GAMM1.260e-4257.48SAM-dependent methyltransferase n=1 Tax=Kushneria ... [more]
UPI001679E76A1.580e-4258.27class I SAM-dependent methyltransferase n=1 Tax=Ku... [more]
A0A1I1LSY7_9GAMM4.450e-4256.69tRNA G46 methylase TrmB n=1 Tax=Kushneria avicenni... [more]
UPI00198FBDA86.830e-4255.47Uncharacterized protein n=2 Tax=Halomonas qijiaoji... [more]
A0A7V7KGH6_9GAMM8.410e-4256.69Methyltransferase domain-containing protein n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14598contigL-elsbetiae_contig14598:1241..2002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue6.8e-62
Seed eggNOG ortholog2880.D7FRQ6
Hectar predicted targeting categoryother localisation
EggNOG OGs2DK0Q@1,2S61T@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionputative tRNA methyltransferase
Ec32 orthologEc-00_003460.1
Exons2
Model size603
Cds size603
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.2009623-CDS-L-elsbetiae_contig14598:1240..15151622815586.2009623-CDS-L-elsbetiae_contig14598:1240..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14598 1241..1515 -
1691682975.2285507-CDS-L-elsbetiae_contig14598:1240..15151691682975.2285507-CDS-L-elsbetiae_contig14598:1240..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14598 1241..1515 -
1622815586.2168946-CDS-L-elsbetiae_contig14598:1674..20021622815586.2168946-CDS-L-elsbetiae_contig14598:1674..2002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14598 1675..2002 -
1691682975.242247-CDS-L-elsbetiae_contig14598:1674..20021691682975.242247-CDS-L-elsbetiae_contig14598:1674..2002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14598 1675..2002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14598.3351.1prot_L-elsbetiae_contig14598.3351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14598 1241..2002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14598.3351.1

>prot_L-elsbetiae_contig14598.3351.1 ID=prot_L-elsbetiae_contig14598.3351.1|Name=mRNA_L-elsbetiae_contig14598.3351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
PISSHTQDAYVQAVEFVRNFHHARVGNGTAAVVLCQEDQHDDQDTKIGEE
VSCVQQQQHRQHIPLPVVLDSGCGTGRSSALLAKSYPHLPVLGIDRSAAR
LSKGGGAPGKPLPRNLLLLRADLVDLWILASRDNAWQVREHCILYPNPYP
KRSQLRSRWHGHSVFPVLLSLGGRITLRSNWKSYLDEVCQAVLAINDEAE
K
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mRNA from alignment at L-elsbetiae_contig14598:1241..2002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14598.3351.1 ID=mRNA_L-elsbetiae_contig14598.3351.1|Name=mRNA_L-elsbetiae_contig14598.3351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig14598:1241..2002- (Laminarionema elsbetiae ELsaHSoW15)
CCGATCTCGTCTCACACTCAGGACGCCTACGTGCAGGCAGTGGAATTCGT GCGAAACTTTCACCATGCACGAGTGGGGAACGGCACAGCAGCGGTGGTGC TTTGCCAAGAGGACCAGCACGATGACCAAGATACGAAGATAGGCGAGGAG GTATCATGTGTACAGCAGCAACAGCACCGGCAACACATTCCGCTACCCGT AGTGCTGGATTCCGGCTGTGGTACCGGACGCTCCAGCGCCTTGCTCGCCA AGTCCTACCCGCACCTTCCTGTATTAGGGATTGATCGGTCTGCGGCGCGG CTTTCTAAAGGAGGAGGGGCCCCCGGGAGTTGGGCCGGAAAACGCGGCCA ACATTCGGACGGCTCGAGAACACAATCCCAAGCACAGCGACGGGGCGACA ACAAAGCACAAGAGGTGGATGGTGACGTTGATGGCGATAATATGCCCTTG GCTCAAAGGAAAGGCGGCCAGGGTGGCCGTCACAGAGAGCCTCTCCCGAG GAATCTCCTACTGCTGCGGGCGGATCTCGTAGACCTCTGGATATTGGCGT CGAGGGACAATGCTTGGCAAGTACGAGAACATTGTATCCTCTACCCTAAC CCTTATCCGAAGCGCTCGCAGTTGCGATCGAGATGGCACGGGCATTCCGT GTTCCCTGTCCTGCTCAGCCTAGGCGGGAGAATAACCCTGCGCTCGAACT GGAAGTCGTATCTCGACGAGGTTTGCCAGGCGGTGCTGGCCATCAACGAC GAGGCGGAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14598:1241..2002-

>mRNA_L-elsbetiae_contig14598.3351.1 ID=mRNA_L-elsbetiae_contig14598.3351.1|Name=mRNA_L-elsbetiae_contig14598.3351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig14598:1241..2002- (Laminarionema elsbetiae ELsaHSoW15)
CCGATCTCGTCTCACACTCAGGACGCCTACGTGCAGGCAGTGGAATTCGT
GCGAAACTTTCACCATGCACGAGTGGGGAACGGCACAGCAGCGGTGGTGC
TTTGCCAAGAGGACCAGCACGATGACCAAGATACGAAGATAGGCGAGGAG
GTATCATGTGTACAGCAGCAACAGCACCGGCAACACATTCCGCTACCCGT
AGTGCTGGATTCCGGCTGTGGTACCGGACGCTCCAGCGCCTTGCTCGCCA
AGTCCTACCCGCACCTTCCTGTATTAGGGATTGATCGGTCTGCGGCGCGG
CTTTCTAAAGGAGGAGGGGCCCCCGGGACCGATCTCGTCTCACACTCAGG
ACGCCTACGTGCAGGCAGTGGAATTCGTGCGAAACTTTCACCATGCACGA
GTGGGGAACGGCACAGCAGCGGTGGTGCTTTGCCAAGAGGACCAGCACGA
TGACCAAGATACGAAGATAGGCGAGGAGGTATCATGTGTACAGCAGCAAC
AGCACCGGCAACACATTCCGCTACCCGTAGTGCTGGATTCCGGCTGTGGT
ACCGGACGCTCCAGCGCCTTGCTCGCCAAGTCCTACCCGCACCTTCCTGT
ATTAGGGATTGATCGGTCTGCGGCGCGGCTTTCTAAAGGAGGAGGGGCCC
CCGGGAAGCCTCTCCCGAGGAATCTCCTACTGCTGCGGGCGGATCTCGTA
GACCTCTGGATATTGGCGTCGAGGGACAATGCTTGGCAAGTACGAGAACA
TTGTATCCTCTACCCTAACCCTTATCCGAAGCGCTCGCAGTTGCGATCGA
GATGGCACGGGCATTCCGTGTTCCCTGTCCTGCTCAGCCTAGGCGGGAGA
ATAACCCTGCGCTCGAACTGGAAGTCGTATCTCGACGAGGTTTGCCAGGC
GGTGCTGGCCATCAACGACGAGGCGGAGAAGAGCCTCTCCCGAGGAATCT
CCTACTGCTGCGGGCGGATCTCGTAGACCTCTGGATATTGGCGTCGAGGG
ACAATGCTTGGCAAGTACGAGAACATTGTATCCTCTACCCTAACCCTTAT
CCGAAGCGCTCGCAGTTGCGATCGAGATGGCACGGGCATTCCGTGTTCCC
TGTCCTGCTCAGCCTAGGCGGGAGAATAACCCTGCGCTCGAACTGGAAGT
CGTATCTCGACGAGGTTTGCCAGGCGGTGCTGGCCATCAACGACGAGGCG
GAGAAG
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