mRNA_L-elsbetiae_contig1459.3350.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1459.3350.1
Unique NamemRNA_L-elsbetiae_contig1459.3350.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1459.3350.1 vs. uniprot
Match: D7G8M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 5.460e-11
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = 2 
Query:   14 RVSMVAADAYTGRNSWRSSSS*PPRRRAPRRAAVGTPAYVYDATSQRTNAETCVHRVPQRLRTDGALRAMKSLPNKAVLQLF 259
            RV MVAA+A  G+    +     P      +AAVGTPAYVYDA S + NAE C+   P          AMKSLPNKAVLQLF
Sbjct:   58 RVEMVAAEAAAGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLA-FPNAYGLT-VRYAMKSLPNKAVLQLF 137
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BLAST of mRNA_L-elsbetiae_contig1459.3350.1 vs. uniprot
Match: A0A6H5JSP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 5.970e-10
Identity = 41/82 (50.00%), Postives = 47/82 (57.32%), Query Frame = 2 
Query:   14 RVSMVAADAYTGRNSWRSSSS*PPRRRAPRRAAVGTPAYVYDATSQRTNAETCVHRVPQRLRTDGALRAMKSLPNKAVLQLF 259
            RV MVAA+A  G+    +     P      +AAVGTPAYVYDA S + NAE C+   P          AMKSLPNKAVLQLF
Sbjct:  141 RVEMVAAEAAVGQKQLETLKFLTPETARATKAAVGTPAYVYDAASLKANAEACLA-FPNAYGLT-VRYAMKSLPNKAVLQLF 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1459.3350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8M4_ECTSI5.460e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSP9_9PHAE5.970e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1459contigL-elsbetiae_contig1459:21795..24166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size180
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1459.3350.1prot_L-elsbetiae_contig1459.3350.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1459 21879..24166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.1371224-UTR-L-elsbetiae_contig1459:21794..218781622815586.1371224-UTR-L-elsbetiae_contig1459:21794..21878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1459 21795..21878 -
1691682975.1967437-UTR-L-elsbetiae_contig1459:21794..218781691682975.1967437-UTR-L-elsbetiae_contig1459:21794..21878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1459 21795..21878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.148459-CDS-L-elsbetiae_contig1459:21878..219711622815586.148459-CDS-L-elsbetiae_contig1459:21878..21971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 21879..21971 -
1691682975.207637-CDS-L-elsbetiae_contig1459:21878..219711691682975.207637-CDS-L-elsbetiae_contig1459:21878..21971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 21879..21971 -
1622815586.158274-CDS-L-elsbetiae_contig1459:24079..241661622815586.158274-CDS-L-elsbetiae_contig1459:24079..24166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 24080..24166 -
1691682975.2195976-CDS-L-elsbetiae_contig1459:24079..241661691682975.2195976-CDS-L-elsbetiae_contig1459:24079..24166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 24080..24166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1459.3350.1

>prot_L-elsbetiae_contig1459.3350.1 ID=prot_L-elsbetiae_contig1459.3350.1|Name=mRNA_L-elsbetiae_contig1459.3350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
IGLGEGQHGGRRRIYRQKQLEKLKFLTPETTRATESGGGHPGLRLRRDEP
KDQCGDLRT*
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mRNA from alignment at L-elsbetiae_contig1459:21795..24166-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1459.3350.1 ID=mRNA_L-elsbetiae_contig1459.3350.1|Name=mRNA_L-elsbetiae_contig1459.3350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2372bp|location=Sequence derived from alignment at L-elsbetiae_contig1459:21795..24166- (Laminarionema elsbetiae ELsaHSoW15)
ATCGGGCTGGGAGAGGGTCAGCATGGTGGCCGCAGACGCATATACCGGCA
GAAACAGCTGGAGAAGCTCAAGTTCCTGACCCCCGAGGTGCGGTGGCCCG
AGCGTTCAATCGGGGGGGGGCTGTTGATTTTCCTTGTTTCCGTTCATCAC
AGCCGTCAGAAGTGCAAGTGCCCGATATATGTGAATGTCAAGCTGGACTC
CTCCCTCTATATTCAGTCAGGAGAAAAAAATGCTCCCTATGTTTGTATTT
CGCATGTGTGTGCTACTGTTGGGCCGGCCGTGTCCAGAAGCTCGAGAAGG
CTCGAGTCTTCACGCTCCAGAGGTTGGCGTTTGGTGGGTCTCTCAGTGTA
TTGCAAGCGAGGTGGAGAGAAATATGGGGCAGCTGCGGAAGCAACAACAT
GCCGATGAACTCGAGATCCTGACGCCTTCTAAAACGCCTTCCAATTTGCC
TTCCTGAATCAATTATTCGGGCCCACGGTTGCAATTCTCTCTGTACATAT
TTACCATACATGGTTTAGCAGAGCTCTTTTCCGTCCTTGCGTTTCATATT
TCGTCGAGGGCGAAAATTGAGCACTTTTTCTGTGTCTCTGTCCGAGGCGG
TTGCTGTACATAAATACTGCGAAAAAGAGGGCGGCGCGCACTTGAGGAGC
AACACACCGAACGAACCGGGAAAATCCTTACTTAAATTGAAACCCCCTCC
TTTTTATTTTGTGTTTGCCACATGTTACATTGAAACCCGTCGCAGTTCTT
TTGCCGTACATCTGCAAGAAAACATTTATGTTGAAAGTGTTTGTTGGTGG
GCACGCTGGCGAAGGTATTGCAGTCATTCATATTCGAGAAGTCTCAACAT
GTTTTTTGTGTGCAGTGCTCACAGACGCTATTCTCGCGCGACCGGACGAT
GAAGAGCGTATGCATGTATGATGCGCTCGACAACCTACTGGCGAAAATCC
CGCTTCACGTCCATACCTTGTACGTGCGCGCACCAGAAGCCACCCGCTAA
CCAATCAGATGAAATGCATTCTGACGTGCGAAATATGCAGTCACGTTACA
AACTGCGAGCGATAAAATAATGACGCGTTAGCAACGTTAACCCAACCAGA
ACGCACAAAATCTTAGAGATCCAAAACAATTTTACGTTAAAAGACACCCT
ATCTGTATGTTCTCTGAACCTGCCGCCCAACCTTCTCCTCTGTACAATTA
GCCATTGTGAGGAGATCTCGACGAGGGGACAAACATTGTGAGGAGATCTC
ACCGAGGGGTTAAACCTTGTGAGGAGATCTCGCAACATCTATCGGCCTTT
TACTAACACTTTCATCACCCCACGCTGTCACAACTTTTCCTGGCCTCCCT
CACAACACGAATCTGCAGAGGCCAACCACCACCCTCTGCACTCCATGCTT
CACGTCACTTGCTCCTGCGTTGAGCAAGCGCTGTACGATAAGAGTGGTCG
AATGGCAAGGTCTCGTCGTCGTCGAAAACGGATATTCAGTGCACTTCACA
CGAACAACCGTGAACAACGTTGTGAACTCACTTTTCTGTCCGTCGGGAGT
TCGACATCCATGAAACTTCACAAATCGAGAGTTCGACTTTCTAGATAGCC
ACAAAAAATGCCTTCCAACCAATTCTCATCAGCTTCACATGAAGGCTTCA
CACATCGGGAGTTCGACTTTCTAGATAGCCACAAAAAATGCCTTCCAACC
AATTCTCGTGAGCTTCACACTTGTCTACCATTCTTGTCTGCCATTACACA
AACACCGCATTTTTTATTTTTCGTATTTTCGTTTACATATACAATGTAGG
TGCGTCTTCGTTATTACTACCACTTTAGTGTAAATATATGTAGCAAGGCC
ACAGAAACACAATTCTTCTTCTCCGGGCTCTCCTCTCTACTGCTGTTCAT
CCGCGAAAGGCCTCCTCCGCACCACGACTTCACTAATCCACGAGTGAGTC
GCCGTGCGTGTCCCCGTAAGCAACTTTTTAGTGGGCGTGGTTATAACTGC
TCGTATATATTCGTGCGTCCTGCCCATAGTACCGTGCCTTTTTAGTCCTC
CTATGGTCTTCCGTGACAACCTTTCGTGCGTCTATCTCTCCGTCGGTGGG
TTGTTTTACGACCGCTTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTG
CCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCTCCCCTAGACGAC
GCGCGCCACGGAGAGCGGCGGTGGGCACCCCGGCCTACGTCTACGACGCG
ACGAGCCAAAGGACCAATGCGGAGACCTGCGTACATAGAGTTCCCCAACG
CCTGCGGACTGACGGTGCGCTACGCGCCATGAAGAGCCTGCCCAACAAGG
CGGTCCTGCAGCTCTTCCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1459:21795..24166-

>mRNA_L-elsbetiae_contig1459.3350.1 ID=mRNA_L-elsbetiae_contig1459.3350.1|Name=mRNA_L-elsbetiae_contig1459.3350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig1459:21795..24166- (Laminarionema elsbetiae ELsaHSoW15)
ATCGGGCTGGGAGAGGGTCAGCATGGTGGCCGCAGACGCATATACCGGCA
GAAACAGCTGGAGAAGCTCAAGTTCCTGACCCCCGAGATCGGGCTGGGAG
AGGGTCAGCATGGTGGCCGCAGACGCATATACCGGCAGAAACAGCTGGAG
AAGCTCAAGTTCCTGACCCCCGAGACGACGCGCGCCACGGAGAGCGGCGG
TGGGCACCCCGGCCTACGTCTACGACGCGACGAGCCAAAGGACCAATGCG
GAGACCTGCGTACATAGACGACGCGCGCCACGGAGAGCGGCGGTGGGCAC
CCCGGCCTACGTCTACGACGCGACGAGCCAAAGGACCAATGCGGAGACCT
GCGTACATAG
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