mRNA_L-elsbetiae_contig1459.3349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1459.3349.1
Unique NamemRNA_L-elsbetiae_contig1459.3349.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: D7FY07_ECTSI (Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY07_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.870e-17
Identity = 39/54 (72.22%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   85 AAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDLT 246
            A E  G    VRFNPGL SGGTKST+VGGPSSS GI YEWADEV++IC  GDLT
Sbjct:   35 AEEAPGSSVGVRFNPGLGSGGTKSTNVGGPSSSFGIWYEWADEVRDICAGGDLT 88
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: D7FY10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY10_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-16
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   85 AAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDLT 246
            A E  G    VRFNPGL SGGTKST+VGGPSSS GI YEWADEVKEIC  GDLT
Sbjct:   17 AEEAPGSSVGVRFNPGLGSGGTKSTNVGGPSSSFGIWYEWADEVKEICAGGDLT 70
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A6H5JSP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.280e-16
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:   85 AAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDLT 246
            A E  G    VRFNPGL SGGTKST+VGGPSSS GI YEWADEVKEIC  GDLT
Sbjct:  281 AEEAPGSSVGVRFNPGLGSGGTKSTNVGGPSSSFGIWYEWADEVKEICAGGDLT 334
[Close]
BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A8J3GD64_9BACT (Diaminopimelate decarboxylase n=1 Tax=Cerasicoccus arenae TaxID=424488 RepID=A0A8J3GD64_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 4.230e-9
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  115 VRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDLT 246
            VRFNPGL SGGT  T+VGGP SS GI +EWADEV+ I  A +LT
Sbjct:  136 VRFNPGLGSGGTGKTNVGGPHSSFGIWHEWADEVEAIAQANNLT 179
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: UPI00178270B1 (diaminopimelate decarboxylase n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI00178270B1)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-7
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    7 GCTLRVCAPARASRVGRGHQRVLPLPAAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDL 243
            G ++ +C+ ++  R G      LP       GG   +RFNPGL SGGT+ T+VGGP+SS GI +E  DEVK++    DL
Sbjct:  111 GISVNICSISQLKRYGA----ALP-------GGKVGLRFNPGLGSGGTQRTNVGGPASSFGIWHEQLDEVKQLVEKYDL 178
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A7S0ZA73_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0ZA73_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 7.820e-7
Identity = 35/73 (47.95%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    7 GCTLRVCAPARASRVGRGHQRVLPLPAAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEI 225
            G  +  C+ ++  R G     V P       GG   VRFNPGL SGGT  T+VGGPSSS GI YE   +VKEI
Sbjct:   45 GVKVNACSLSQLERFGE----VFP-------GGEVGVRFNPGLGSGGTGKTNVGGPSSSFGIWYESLPKVKEI 106
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A7S4IWV9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IWV9_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.190e-7
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  115 VRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDL 243
            VRFNPGL SGGT  T+VGGP+SS GI +E   +V+ IC A DL
Sbjct:   95 VRFNPGLGSGGTGKTNVGGPASSFGIWHELMPQVQAICEAADL 137
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BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A7S0KQC7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KQC7_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 8.510e-7
Identity = 35/73 (47.95%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    7 GCTLRVCAPARASRVGRGHQRVLPLPAAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEI 225
            G  +  C+ ++  R G     V P       GG   VRFNPGL SGGT  T+VGGPSSS GI YE   +VKEI
Sbjct:  154 GVKVNACSLSQLERFGE----VFP-------GGEVGVRFNPGLGSGGTGKTNVGGPSSSFGIWYESLPKVKEI 215
[Close]
BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: A0A7S2CVR2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVR2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.550e-6
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:  115 VRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEICVAGDL 243
            +RFNPGL SGGT  T+VGGPSSS GI YEW +E   I    +L
Sbjct:  121 LRFNPGLGSGGTGKTNVGGPSSSFGIWYEWEEECAAIAAEHNL 163
[Close]
BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Match: UPI0019070ED6 (diaminopimelate decarboxylase n=1 Tax=Pelagicoccus mobilis TaxID=415221 RepID=UPI0019070ED6)

HSP 1 Score: 55.5 bits (132), Expect = 1.560e-6
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    7 GCTLRVCAPARASRVGRGHQRVLPLPAAEDRGGGPEVRFNPGLESGGTKSTSVGGPSSSLGIRYEWADEVKEI 225
            G T+ VC+ ++  R G      + LP ++       +RFNPGL SGGT+ T+VGGP+SS GI +E  +EV+E+
Sbjct:  111 GITVNVCSLSQLKRFG------IALPGSK-----VGLRFNPGLGSGGTQRTNVGGPASSFGIWHEHLEEVQEL 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1459.3349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY07_ECTSI5.870e-1772.22Pyridoxal-dependent decarboxylase, C-terminal shee... [more]
D7FY10_ECTSI1.650e-1675.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSP9_9PHAE4.280e-1675.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J3GD64_9BACT4.230e-968.18Diaminopimelate decarboxylase n=1 Tax=Cerasicoccus... [more]
UPI00178270B11.770e-743.04diaminopimelate decarboxylase n=1 Tax=Pelagicoccus... [more]
A0A7S0ZA73_9CHLO7.820e-747.95Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S4IWV9_9EUKA8.190e-762.79Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S0KQC7_9CHLO8.510e-747.95Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A7S2CVR2_9STRA1.550e-660.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI0019070ED61.560e-642.47diaminopimelate decarboxylase n=1 Tax=Pelagicoccus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1459contigL-elsbetiae_contig1459:18080..20987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7FY10
KEGG rclassRC00299
KEGG koko:K01586,ko:K01611,ko:K18408
KEGG ReactionR00178,R00451
KEGG Pathwayko00270,ko00300,ko00330,ko01100,ko01110,ko01120,ko01130,ko01230,map00270,map00300,map00330,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00034,M00133,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
EggNOG free text desc.putrescine biosynthetic process from ornithine
EggNOG OGsCOG0019@1,KOG0622@2759
EC3.6.4.13,4.1.1.20,4.1.1.50
COG Functional cat.E
BiGG ReactioniG2583_1286.G2583_3495
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Exons3
Model size351
Cds size351
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1459.3349.1prot_L-elsbetiae_contig1459.3349.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1459 18080..20987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815586.0623744-CDS-L-elsbetiae_contig1459:18079..182431622815586.0623744-CDS-L-elsbetiae_contig1459:18079..18243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 18080..18243 -
1691682975.1616771-CDS-L-elsbetiae_contig1459:18079..182431691682975.1616771-CDS-L-elsbetiae_contig1459:18079..18243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 18080..18243 -
1622815586.0773916-CDS-L-elsbetiae_contig1459:19260..194131622815586.0773916-CDS-L-elsbetiae_contig1459:19260..19413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 19261..19413 -
1691682975.175681-CDS-L-elsbetiae_contig1459:19260..194131691682975.175681-CDS-L-elsbetiae_contig1459:19260..19413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 19261..19413 -
1622815586.0940475-CDS-L-elsbetiae_contig1459:20953..209871622815586.0940475-CDS-L-elsbetiae_contig1459:20953..20987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 20954..20987 -
1691682975.1852534-CDS-L-elsbetiae_contig1459:20953..209871691682975.1852534-CDS-L-elsbetiae_contig1459:20953..20987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1459 20954..20987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1459.3349.1

>prot_L-elsbetiae_contig1459.3349.1 ID=prot_L-elsbetiae_contig1459.3349.1|Name=mRNA_L-elsbetiae_contig1459.3349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
PWGCTLRVCAPARASRVGRGHQRVLPLPAAEDRGGGPEVRFNPGLESGGT
KSTSVGGPSSSLGIRYEWADEVKEICVAGDLTGCARTSVVPVPIRPCGRR
QGEVCSKRREAQIQFY*
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mRNA from alignment at L-elsbetiae_contig1459:18080..20987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1459.3349.1 ID=mRNA_L-elsbetiae_contig1459.3349.1|Name=mRNA_L-elsbetiae_contig1459.3349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2908bp|location=Sequence derived from alignment at L-elsbetiae_contig1459:18080..20987- (Laminarionema elsbetiae ELsaHSoW15)
CCGTGGGGATGCACCCTCAGAGTCTGTGCCCCAGGTGAGCTCCCGATTCT
CATTCGTGCGATTCGGTTGTGCGCGTGGTTGTATGTAGCAAGAGTGGGAG
GGAAGTCGGCTTCGGATATTGGAACGGTACCGTACTGTACCCCCACAATG
CGTGTTTTGGATGCAGCCCGCTTATCTTTAAGGAAGATTCGCCGCGTTTC
GGGGAAGGGGATACGAAAAACGTTGGGAGGGAGCGTTTGGTGATATGTAT
GTTTTGTAAATACCAGGGGGGTCCGCGAATAATAAACTGTCACCGGAGTC
AACGCAGGCGGGAAAAACTCTCTTTCAGCCGCCAGCCTTTATTTTGTCCC
TGAGCTCAACCGAATCGCTACCTTTTAGCACAGCCATATACACAGGTCGC
AGCTTGCTCTAATTTTTTCAGGGGGTCTCGTATATGTCCTGCACTACGTC
CGCAAGTAGTTTGCATGCCGTTGTGTTGTCTTGAGCTCGAGGAATGCTGC
GTCGTCGCGACTGCGAGAAGCAAGTTTGCTCTACTTTTTTGCCCCTCAGT
AGCAAACTTCATGCGACTGTCGGCCGTCAAAGGAGTTCACGAAATCGCTC
GGTGTTTCGGCACAGTGGAGGCACATGGGTATAGAGTCATTTCAAGGGTG
GAGCATTTTTGGATCCCAGGCATGATAGCCACATCAGCGAACATCGAAAG
TAACCTCTCTTCACAGAAGGAAACAAAACCACGCACAATGAATATACCTC
CAAATGTTGATTTGGATCCCAGGCATGACAGCCACATCAGCGAACATCGA
AAGTAACCTCTCTTCACAGAAGGAAACAAAACCACGCACAATGAATATAC
CTCCAAATGTTGATTTTTCCCCAAAATTTTCCCCGATTTGAACCTTTATC
GCTGTGTCGGCGGCCGAAAACATTCCCCAAAAAGCTTAACGGTGAGACCA
GGCTGTAGAGGAATCCACACAGATTCCATAGAAGGGTGGAGGAATTTTGG
ATCTCAACTACAGCCGGGGCCATTACGAAGGGACTGCCCAGCCCTATGGC
GAAAGCAGGCAAGCGGGGGCTCCAAAATTCCGGCGCTCGTGAACACTTTT
TTCCAAAAAGCGCGATACGGGGCCCCCTGCGACGCGGGTGATACCTGCAA
CGCGAGCGTAGCAGTATTCTCGGTCTAAAAGGTTGGGACTGCTGTGTGTG
TGTGTACGCGCGCGCGTGCGGCGCTTGCTCGTGCTTTTGCTTCTTGGGAT
GCGCCTCAGTCGCTGGCTTACCGGCGAAATCATCCGTCAGTCTCAGCAGG
GCAAAACCAAAAACTTCGTTCACGCTTGCGTGCGATACCGTGGAGGGTGG
GTGGGGGGCAGGAATCTCTGGTGCTGCTGAGCATAAAGAGCTACACTTGC
ATATGTATGACCTGCGCACCGCGTCGGTAGCCCATCACGCTTCGTGTAGA
GATCCACAACGCGGAATCGTCCGCGCAGACAAACCTAGGGTTAAGCCGGA
AACCGAAATACACAAGCCCGCCCACGCCCTCCCCCGCCCTGCCCTACCCA
CGCTGCACCAAACAAACAAACAAGCGCGAGCTTCTCGAGTCGGGCGTGGG
CATCAACGCGTGCTTCCTCTCCCAGCTGCGGAGGATCGTGGAGGAGGCCC
AGAGGTGCGCTTCAACCCCGGGCTCGAATCGGGGGGCACGAAGAGCACCA
GCGTGGGAGGGCCATCCTCCTCACTCGGTGGGTTTCGGATTTTGTCTCAC
TCACTGTAGAGGGGGGGGGTTGATTGTGCCCTTATTTCTGGGAGAAGACC
ATCCAACCCTCCTCGTTCGGTGGAGGTTTTGAGTCCTTTTTATTTTCACC
GGAGATGTGAGGGGTTTGAGCGCTCAGTTCTGGGTTTGCAATCATCCATC
GCATGTTAGATTTAGGGTTAGGGTTAGAGGGTGGCGAGGGGAGTTGGTTG
AACCCCCGTCCGTCTCCAGAGCTGGTCTCTGGTTGATTGATAGGTATCTG
TGGAGTATCGTTGTGGTGTTTAGGGTGGTTGGGTGTTTGTTTGTTGACGC
GAAGGCGCGACGGGGGACCCTTTGAAGGGATGACGGTGGTGGGGGGGGGA
AGGGGCGAAGAAGAAACAACAAAGGGGTTTAGACACACGAAAACGTTTTT
TTACTCCTCTTTTTGGCACCGTTGGTTTGTCGTTTTCGGTGCTTTGATTT
AGCGCGTGCTTGCCTCTTGCCCGAGATGATGCGTTGTCACCTGTTCTCGA
GTGAGCGGATGCTGATGGAGTTGGAGTGGAGATGCCGAGTGCCTTCAATC
CCTCATTTTTAGCCACCAATCCGGGGGTGGTGACGGCAGCGAGCTACTAT
TTACGACGGCTTCAGCGACCCGGGTTCTGTCTTTCCTTTCTCGGAGGTAT
CCTGAGAGCGGTGGCCGGGCGAGAGCAAAAAGGGGCGGTGTTGACAAAAC
ACCAGCGCGGCGGCGGCGGAGATATAAGAGGTGGTGGCGACTGCGATGAG
CAGGCAGCAGAAGCAAGAAGCGCGACGGCAGTGTTGCTCCGTGGTCGTTG
CAGACCATCTTGAGGTTTTGGGGTTGGCGTTTTCGCTACCCTCGGTCCAA
TCGCCTTTTACGAACATGGCTGACAGGCAAGTCGTGCCTTGCTTACCCTC
GTTGACATGCCTTTATACACCCATCATACTTCGTTTGAGCCGATGCTTCG
AAACACATATCTACATACTTTGCAGTGTTTTCTCGTGTCTACAGGTATCC
GGTACGAATGGGCGGACGAGGTTAAGGAGATCTGCGTCGCTGGTGACCTG
ACCGGGTGCGCACGCACATCGGTGGTTCCGGTTCCGATCCGGCCGTGCGG
CAGAAGGCAAGGCGAGGTTTGTTCGAAGCGGAGAGAAGCACAAATCCAGT
TTTATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1459:18080..20987-

>mRNA_L-elsbetiae_contig1459.3349.1 ID=mRNA_L-elsbetiae_contig1459.3349.1|Name=mRNA_L-elsbetiae_contig1459.3349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig1459:18080..20987- (Laminarionema elsbetiae ELsaHSoW15)
CCGTGGGGATGCACCCTCAGAGTCTGTGCCCCAGCCGTGGGGATGCACCC
TCAGAGTCTGTGCCCCAGCGCGAGCTTCTCGAGTCGGGCGTGGGCATCAA
CGCGTGCTTCCTCTCCCAGCTGCGGAGGATCGTGGAGGAGGCCCAGAGGT
GCGCTTCAACCCCGGGCTCGAATCGGGGGGCACGAAGAGCACCAGCGTGG
GAGGGCCATCCTCCTCACTCGCGCGAGCTTCTCGAGTCGGGCGTGGGCAT
CAACGCGTGCTTCCTCTCCCAGCTGCGGAGGATCGTGGAGGAGGCCCAGA
GGTGCGCTTCAACCCCGGGCTCGAATCGGGGGGCACGAAGAGCACCAGCG
TGGGAGGGCCATCCTCCTCACTCGGTATCCGGTACGAATGGGCGGACGAG
GTTAAGGAGATCTGCGTCGCTGGTGACCTGACCGGGTGCGCACGCACATC
GGTGGTTCCGGTTCCGATCCGGCCGTGCGGCAGAAGGCAAGGCGAGGTTT
GTTCGAAGCGGAGAGAAGCACAAATCCAGTTTTATTGAGTATCCGGTACG
AATGGGCGGACGAGGTTAAGGAGATCTGCGTCGCTGGTGACCTGACCGGG
TGCGCACGCACATCGGTGGTTCCGGTTCCGATCCGGCCGTGCGGCAGAAG
GCAAGGCGAGGTTTGTTCGAAGCGGAGAGAAGCACAAATCCAGTTTTATT
GA
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