mRNA_L-elsbetiae_contig1458.3345.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1458.3345.1
Unique NamemRNA_L-elsbetiae_contig1458.3345.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: D7FV45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV45_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 5.810e-53
Identity = 100/118 (84.75%), Postives = 109/118 (92.37%), Query Frame = 1 
Query:    1 MAFKQIMAAGAIVLACLVANASAFVTPMTTVGAPAT-SARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSKIFHSGMDDWEEVDIFNE 351
            MAFKQ++A     LACLVA++ AFVTPMTT+ APAT SARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAE+EA FL+K+FHSGMDDWEEVDIF+E
Sbjct:    1 MAFKQLLA-----LACLVASSLAFVTPMTTLRAPATTSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEDEAEFLAKVFHSGMDDWEEVDIFSE 113
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A835YKP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKP5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.440e-12
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   40 LACLVANASAFVTPMTTVGAPATSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSKIF 306
            LA L A ASAF+ P    G   + + ST+ +R    M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E+EA+F++K++
Sbjct:    9 LAFLAATASAFLAPSAFTGMQISQSTSTSESRLS--MACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKLY 95
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A835ZDX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDX5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.540e-12
Identity = 45/89 (50.56%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:   37 VLACLVANASAFVTPMTTVGAPATSARSTASARGGALMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSKI 303
            V+ CLVA A+AF +  T  GA  +   +T +A     M+CR NAKK+K  RN+ NMRKF KRGTS+KKI+R +RQ+ A E+EA+F++K+
Sbjct:    9 VVLCLVAMATAFTSAFT--GAALSQGTATTAAASPLTMACRNNAKKQKAKRNQDNMRKFRKRGTSKKKIVRGKRQQTAREKEADFMAKL 95
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A7R9YX41_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YX41_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.180e-7
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  145 LMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSKIFHS 312
            L +CRVNAKKEKR RNR NMRKF KRG SRKK+++     +A + E  FL+K F S
Sbjct:   62 LEACRVNAKKEKRQRNRENMRKFQKRGLSRKKVMKKAFSAQARQAENEFLAKCFTS 117
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A7S2A5Y1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5Y1_TRICV)

HSP 1 Score: 53.5 bits (127), Expect = 7.860e-7
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  145 LMSCRVNAKKEKRTRNRLNMRKFN-KRGTSRKKILRVERQERAAEEEANFLSKIFHS 312
            L +CR NAKKEKR RNR NMRKF  KRGTSRKK ++  +   A ++EA FL+K F S
Sbjct:   39 LEACRANAKKEKRQRNRENMRKFQRKRGTSRKKAMKKIQSNEARQKEAEFLAKCFTS 95
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A7S1GM72_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GM72_CYCTE)

HSP 1 Score: 53.1 bits (126), Expect = 1.180e-6
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:  145 LMSCRVNAKKEKRTRNRLNMRKFN---KRGTSRKKILRVERQERAAEEEANFLSKIF-HSGMDDWE 330
            L  CRVNAKKEKR RNR NMRKF    KRG SR+K+L+  +  +A +EE  F++K F H G+ D E
Sbjct:   37 LFGCRVNAKKEKRKRNRENMRKFKSTGKRGMSRRKMLKKVQAAKARQEENEFMAKAFLHVGVTDVE 102
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A7S2MH60_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MH60_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-6
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  142 ALMSCRVNAKKEKRTRNRLNMRKF-NKRGTSRKKILRVERQERAAEEEANFLSKIF 306
            AL  CRVNAKKEKR RNR NMRKF +KRGTSR+K ++  +  +A   EA FL+K F
Sbjct:   34 ALNGCRVNAKKEKRQRNRENMRKFKSKRGTSRRKTMKKLQSNQARAAEAEFLAKCF 89
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A6S9AXI8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9AXI8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.100e-6
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:  142 ALMSCRVNAKKEKRTRNRLNMRKF-NKRGTSRKKILRVERQERAAEEEANFLSKIFHSG 315
            AL +CRVNAKKEKR RNR NMRKF +KRGTSR+K ++  +   A   EA F++K F  G
Sbjct:   36 ALEACRVNAKKEKRQRNRENMRKFKSKRGTSRRKTMKKLQANAARASEAEFIAKCFALG 94
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BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Match: A0A7S4HRS8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HRS8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.210e-5
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  145 LMSCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSKIFHS 312
            L  CRVNAKKEKR RNR NMRKF +RG S++K ++     +A + E  FL+K F S
Sbjct:   39 LQGCRVNAKKEKRQRNRENMRKFQRRGLSKRKTMKKAFSAQARQAENEFLAKCFTS 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1458.3345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FV45_ECTSI5.810e-5384.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKP5_9STRA4.440e-1250.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDX5_9STRA6.540e-1250.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YX41_9STRA3.180e-758.93Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2A5Y1_TRICV7.860e-759.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1GM72_CYCTE1.180e-654.55Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2MH60_9STRA1.460e-660.71Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9AXI8_9STRA2.100e-657.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4HRS8_9STRA1.210e-553.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1458contigL-elsbetiae_contig1458:12219..15319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D7FV45
Hectar predicted targeting categorychloroplast
EggNOG OGs2E66M@1,2SCXT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_005120.1
Exons4
Model size354
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1458.3345.1prot_L-elsbetiae_contig1458.3345.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1458 12219..15319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.6105294-CDS-L-elsbetiae_contig1458:12218..123481622815585.6105294-CDS-L-elsbetiae_contig1458:12218..12348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 12219..12348 +
1691682974.913779-CDS-L-elsbetiae_contig1458:12218..123481691682974.913779-CDS-L-elsbetiae_contig1458:12218..12348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 12219..12348 +
1622815585.6202939-CDS-L-elsbetiae_contig1458:12817..128671622815585.6202939-CDS-L-elsbetiae_contig1458:12817..12867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 12818..12867 +
1691682974.9260116-CDS-L-elsbetiae_contig1458:12817..128671691682974.9260116-CDS-L-elsbetiae_contig1458:12817..12867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 12818..12867 +
1622815585.630375-CDS-L-elsbetiae_contig1458:14640..146821622815585.630375-CDS-L-elsbetiae_contig1458:14640..14682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 14641..14682 +
1691682974.935148-CDS-L-elsbetiae_contig1458:14640..146821691682974.935148-CDS-L-elsbetiae_contig1458:14640..14682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 14641..14682 +
1622815585.6425278-CDS-L-elsbetiae_contig1458:15187..153191622815585.6425278-CDS-L-elsbetiae_contig1458:15187..15319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 15188..15319 +
1691682974.9481707-CDS-L-elsbetiae_contig1458:15187..153191691682974.9481707-CDS-L-elsbetiae_contig1458:15187..15319Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 15188..15319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1458.3345.1

>prot_L-elsbetiae_contig1458.3345.1 ID=prot_L-elsbetiae_contig1458.3345.1|Name=mRNA_L-elsbetiae_contig1458.3345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MAFKQIMAAGAIVLACLVANASAFVTPMTTVGAPATSARSTASARGGALM
SCRVNAKKEKRTRNRLNMRKFNKRGTSRKKILRVERQERAAEEEANFLSK
IFHSGMDDWEEVDIFNE*
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mRNA from alignment at L-elsbetiae_contig1458:12219..15319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1458.3345.1 ID=mRNA_L-elsbetiae_contig1458.3345.1|Name=mRNA_L-elsbetiae_contig1458.3345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3101bp|location=Sequence derived from alignment at L-elsbetiae_contig1458:12219..15319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCAAGCAGATTATGGCGGCCGGCGCAATAGTGCTGGCGTGCCT
CGTCGCGAACGCATCGGCCTTCGTTACCCCGATGACCACCGTCGGCGCAC
CCGCCACCTCCGCGCGTAGCACCGCCTCAGGTATTTACATACGGCAACAC
ACGCACGCGTGTATTTTGTACAATAGGCATCAATCCCCTCCTCTGTAAGG
CATGAGATGCTCTACCTGGAAGAAAAGGCACGGAGAGTCCCCGCGTGAGG
CACTCGATTTAAAGTTGAATGGCTCAGTCAGCTTTGGAGCACGGAGAGGT
TGTGTCTCTCCTGTGTCCTCATGTTGAGTTTGCTCCAAGTTGTTCATGTT
TCCCCCCCCCCCTAAAACACTTGTTGTATATAGCTCGAATGGGAGAAGGC
TGATGCCGCTACCACAGAACAGACGTGGACCAGAATGTCTCATGCTTCGC
GCTTTTACGGAGCGAGGAGGTTGGTGCTGACCCGCCTCCGAGTAATAATA
TGTTGCCGTTTTTCTCTGGCCCCCGACTGTTGCGTTTTTTTCGCCAACGC
CAACGTCGTTGCCGCTCCTGACCGGTCTGGCGCTCCCCTGGGAGAGCAGC
TCGCGGAGGAGCGCTCATGTCTTGCAGGGTCAACGCCAAGAAGGAGAAGG
TGCGTGGTTAGGCCCGGGAGCTTTCTGGTGTGTGACCTGTGTTTTTATGT
ATGCTCTTCTTGCTCTGCCCCCCAGTACTTGTACTGCTGCCTGTGTGAGT
CTTGTATGTACCGCTCCGGCAGTTCTCGTGACCACTTGGCACAGAGCAGC
GAGTGTACACACATATGTGCAAGTAAAAACAGACCCGCACGCAGCAGCAA
TTTGATGAAAGAAAGGGTCCGAAGGTTTGTAAGTATTTTATGGGGGCAGA
GATAAATATGTTCCCCTTTCCTCTCTGTTCAAGTCTCAGTGAGAGAAAAA
TACATGGTTTTACTTTACTGCTGTTGTCGCTTACAAATAAATACTCTTAG
AGGTGGACGGCCGGGTGACACCTGCTTGCTTCCAAAATCCCCTGCGATGC
GGCGGTTTCTCATCGGGCGGGTCCTGATATTTTCTCTCAATCCCGTCCCG
TCTCCGTACATTCCCTCGGCGTTTTTGCATGGCATCCATGCGTCGTGTGT
GCCTGGGGGCTCCATTTTCATTCCTTCCTTCCGTCCCCGACCGTTTGCAG
CCTCCTTTCGGGGGGCCGCGTTTTGCTCTGCTCTGCAACACCAACACGGA
GAGAACAACGACGCCTTGCCGATGATTGATGTGTACGACCCGTCGCATTC
TATCGCTGAGTTTTGCACAGACGGCATACTTTCGCTCTTTTCAAGTTTTT
GGCCTGGTTCCACACCATACATATATACGGCGCTACAAATACAGCGAGAT
ACACACACACGTAGGTTTCTAGTGTACTCTTTTATTGTTTCTGCAATGGC
ACCCCTTTTTCCTTCTTCTAAGAGAAGCCGGACAAGGAACAGCAATTCGA
AACCCACGACGCCCCTTTCTATGCGCCGGCCCTATATCTTCAGTTGGGTT
GCACATTTCTGCGCTTGTCAGTGGTTCTTGGGGCATATGTACGAGACGAA
TGTAGGCTGCTGGCTGCCCCGAAATGAATCAACTGCGTGCTTGCAGCGGT
CGTGTGACTGCACCAGGATGCCACAAGCCGGTAAAAAGGAGTAGCACCAC
AGGGTCTTGAAACGTTCGTCTGTGTTGATGGCGGCGCCAGCCTTTCTTGG
CGTGTTGCTTTGAGTTTTGTCCAAATTTTCAGAGGGGCACGGGGGGAAAT
AGGAATCGGGGAGGTATTCCGGTATCCCAGCTGGGAAATACGGTCAGGCC
AAAAGCTCGCCGCGCGTTCGCGTCCGGGTAGCCGCACCGCCACAAGAAGA
GCAGCCCATGAAGCGGAAACGCCGGCGTGGCAGAAAGACACGAAAGTTGC
AAACCCTGATATCACTGCTGCTGCTGCTGCTGTCGAATACGGCCTAGATA
ATGGTTCTTCTCCGCCGCGTACATACATGTATGATACGCCGCTTCCCTGA
CGGGCACCACGACACCGCACTTTCCACAGCAAACAGTAGCACAGCAAGCG
GGTTGATGTGTCCGAATGCTGGGTGCCATGTCGCTTTGCCGCGTAGCCGC
CTCGCCTCGCCTCGTCGGCGGCGAACTCTGCGCACAGGAGCAAAAGCGGG
CTACCGTCCAATGCGGTTGATCCATCGACGGTGCCTCCCTCGGGTTACGG
CAAGACTTATGACAGGCCCGCCTACAGCAGTATAGATGGATGGATACTGT
AGCACGCACGTGCGCTTGCCCATGCACGTCACAAGACCTTATATATCTAC
CCCCACCCCCGTCTCGCCCTCCCTTGTGCTTTTTATCGTGTCGCGGTTTT
GATTGTGGTTGTGTCCGAGCAGAGGACGCGTAACCGACTTAACATGCGCA
AGTTCAACAAGAGGGTGAGCGAGAGCGAGAGGGGGAGAGAAAAGCTTGTG
CAACTTGGCTGTTGTTGTATTCGAGGCAGGCTGCGTCGCGTCCCTTCGTT
GCATCATACAGGCACTCAGTTAGCTAACACTCAGGCTGCCGACGTCGGTC
TTCTATTCATGCTTGCCTCCTTATCGCCTGAAAAAAGTTGTTCGTGCTTT
GCTACATGCACATAATTTCCTTCGCTCCTCTCGCGACTTGTGCAGCCGTT
GCTGTTATTAGGGGTTGTTCCACGTCCGCGCTTCAATAGTCAAGTGTCTA
CATAGACGACGTGCATACCTACCGAGTACAAAGGCTGTGGGGGGCACGCA
GCACGTGCATTGGGTGTTAATGATGGCTTCGCTTTTGGTGATCCTTCCTT
GTCTGGTGCGTGTCTGTGGTCGTCACCCCCGGGTGAGATGATAAACCGGG
TGTGCCGTGTGTTTATTTCGCGGATCCTTATATCCTACATACATCTCGCC
GTGTGAAAAAAAAACGCAGGGCACGTCGAGAAAGAAGATCCTCCGCGTGG
AGCGACAGGAGCGCGCCGCGGAGGAGGAGGCCAACTTCCTCTCCAAGATT
TTCCACTCCGGCATGGATGACTGGGAGGAGGTGGACATCTTCAACGAGTA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1458:12219..15319+

>mRNA_L-elsbetiae_contig1458.3345.1 ID=mRNA_L-elsbetiae_contig1458.3345.1|Name=mRNA_L-elsbetiae_contig1458.3345.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1458:12219..15319+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTTCAAGCAGATTATGGCGGCCGGCGCAATAGTGCTGGCGTGCCT
CGTCGCGAACGCATCGGCCTTCGTTACCCCGATGACCACCGTCGGCGCAC
CCGCCACCTCCGCGCGTAGCACCGCCTCAGATGGCCTTCAAGCAGATTAT
GGCGGCCGGCGCAATAGTGCTGGCGTGCCTCGTCGCGAACGCATCGGCCT
TCGTTACCCCGATGACCACCGTCGGCGCACCCGCCACCTCCGCGCGTAGC
ACCGCCTCAGCTCGCGGAGGAGCGCTCATGTCTTGCAGGGTCAACGCCAA
GAAGGAGAAGCTCGCGGAGGAGCGCTCATGTCTTGCAGGGTCAACGCCAA
GAAGGAGAAGAGGACGCGTAACCGACTTAACATGCGCAAGTTCAACAAGA
GGAGGACGCGTAACCGACTTAACATGCGCAAGTTCAACAAGAGGGGCACG
TCGAGAAAGAAGATCCTCCGCGTGGAGCGACAGGAGCGCGCCGCGGAGGA
GGAGGCCAACTTCCTCTCCAAGATTTTCCACTCCGGCATGGATGACTGGG
AGGAGGTGGACATCTTCAACGAGTAGGGCACGTCGAGAAAGAAGATCCTC
CGCGTGGAGCGACAGGAGCGCGCCGCGGAGGAGGAGGCCAACTTCCTCTC
CAAGATTTTCCACTCCGGCATGGATGACTGGGAGGAGGTGGACATCTTCA
ACGAGTAG
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