mRNA_L-elsbetiae_contig14555.3332.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14555.3332.1
Unique NamemRNA_L-elsbetiae_contig14555.3332.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: D7FQ68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ68_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.850e-48
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   +KFRVSDAT V LFGFRTHFGGGKSTGFCLIYDS+EDMKKFEPK RLARAGLQDKKETSRKQIKEAKNR KKIRGTGRRIAKHKAKKAAK
Sbjct:   40 LGEMIAKKFRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 135
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: A0A7S2US90_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US90_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.050e-38
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   +  +V+D TTV+LFGFRT FGG KSTGFCLIYDS+ED KKFEPKFRL R GL +K ETSRKQIKEAKNR KKIRGTGRRIA+HKAKKA K
Sbjct:   41 LQERLAKMHKVNDTTTVSLFGFRTAFGGNKSTGFCLIYDSVEDAKKFEPKFRLVRLGLAEKTETSRKQIKEAKNRGKKIRGTGRRIARHKAKKANK 136
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: F0YI50_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI50_AURAN)

HSP 1 Score: 124 bits (312), Expect = 9.730e-35
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   28 RVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            +V+D   ++LFGFR  FGGGKSTGFCLIYDS E  KK+EPK+RL R G+ +KKETSRKQIKEAKNR KK+RGTGRRIA HKAKKAAK
Sbjct:   49 KVADTQLISLFGFRNKFGGGKSTGFCLIYDSAEAAKKYEPKYRLIRNGIVEKKETSRKQIKEAKNRKKKVRGTGRRIANHKAKKAAK 135
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: W7U6J8_9STRA (40S ribosomal protein S24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6J8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.650e-33
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:   46 TVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            T  LFGFRT FGGGKSTGF LIYD++ED KKFEPK RL RAGL  KKETSRKQIKEAKNR+KKIRGTGRR+AKHKAKKA K
Sbjct:   57 TTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: A0A8J2WEF7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEF7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.040e-33
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   25 FRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKK----IRGTGRRIAKHKAKKAAK 288
            ++V+D + ++LFGFR  FGGGKSTGFCLIYDS E  KK+EPK+RL R G  +KKETSRKQIKEAKNR KK    IRGTGRRIA HKAKKAAK
Sbjct:   54 YKVTDKSLISLFGFRNKFGGGKSTGFCLIYDSAESAKKYEPKYRLVRNGFVEKKETSRKQIKEAKNRKKKQIRQIRGTGRRIANHKAKKAAK 145
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: M4BX32_HYAAE (40S ribosomal protein S24 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BX32_HYAAE)

HSP 1 Score: 119 bits (298), Expect = 8.660e-33
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   + ++V D+ TV L+GFRT FGGGKS+GF L+YDS+ D K+FEPK+RL R GL +K ETSRKQIKEAKNR+KK+RG GRRIA+HKA KA K
Sbjct:   28 LQEKISKMYKVKDSNTVFLYGFRTQFGGGKSSGFGLVYDSVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRAKKVRGVGRRIARHKAAKANK 123
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: F0WPH7_9STRA (40S ribosomal protein S24 n=3 Tax=Albugo TaxID=65356 RepID=F0WPH7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.200e-33
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   + ++V D  TV L+GFRT FGGGKSTGF LIYDS+ D K+FEPK+RL R GL +K E+SRKQIKEAKNR KKIRG GRRIA+HKA KA K
Sbjct:   42 LQEKVGKMYKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: D0N827_PHYIT (40S ribosomal protein S24 n=14 Tax=Phytophthora TaxID=4783 RepID=D0N827_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 1.850e-32
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   + ++V DA TV L+GFRT FGGGKS+GF L+YD++ D K+FEPK+RL R GL +K ETSRKQIKEAKNR KK+RG GRRIA+HKA KA K
Sbjct:   42 LQEKISKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: A0A0P5B3P7_9CRUS (40S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5B3P7_9CRUS)

HSP 1 Score: 119 bits (297), Expect = 1.910e-32
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRS-KKIRGTGRRIAKHKAKKAAK 288
            L +   + ++V DATTV L+GFRT FGGGKS+GFCLIYDSI D K+FEPK RL R GL DK ETSRKQIKEAKNR+ K  RG GRRIA+HKA KA K
Sbjct:   42 LQEKVAKMYKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSINDAKRFEPKHRLVRQGLADKVETSRKQIKEAKNRALKNPRGVGRRIARHKANKANK 138
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BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Match: W4GRV1_9STRA (40S ribosomal protein S24 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=W4GRV1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.730e-32
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPKFRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK 288
            L +   + ++V+D  TV L+GFRT FGGGKS+GF LIYD++ D KKFEPK+RL R GL +K E SRKQIKE+KNR+KK+RG GRRIA+HKA KA K
Sbjct:   42 LQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14555.3332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ68_ECTSI1.850e-4888.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US90_9STRA1.050e-3875.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YI50_AURAN9.730e-3574.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7U6J8_9STRA1.650e-3382.7240S ribosomal protein S24 n=2 Tax=Monodopsidaceae ... [more]
A0A8J2WEF7_9STRA3.040e-3371.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M4BX32_HYAAE8.660e-3364.5840S ribosomal protein S24 n=1 Tax=Hyaloperonospora... [more]
F0WPH7_9STRA9.200e-3366.6740S ribosomal protein S24 n=3 Tax=Albugo TaxID=653... [more]
D0N827_PHYIT1.850e-3264.5840S ribosomal protein S24 n=14 Tax=Phytophthora Ta... [more]
A0A0P5B3P7_9CRUS1.910e-3269.0740S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=... [more]
W4GRV1_9STRA3.730e-3263.5440S ribosomal protein S24 n=6 Tax=Saprolegniaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14555contigL-elsbetiae_contig14555:1267..2156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog2880.D7FQ68
Preferred nameRPS24
KEGG rclassRC00002,RC02878
KEGG koko:K01008,ko:K02974,ko:K17338
KEGG ReactionR03595
KEGG Pathwayko00450,ko01100,ko03010,map00450,map01100,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001889,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0031090,GO:0031099,GO:0031100,GO:0031369,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2004@1,KOG3424@2759
EC2.7.9.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Ec32 ortholog descriptionRibosomal protein S24e
Ec32 orthologEc-01_007240.1
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.0492177-CDS-L-elsbetiae_contig14555:1266..14431622815584.0492177-CDS-L-elsbetiae_contig14555:1266..1443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14555 1267..1443 +
1691682974.0332444-CDS-L-elsbetiae_contig14555:1266..14431691682974.0332444-CDS-L-elsbetiae_contig14555:1266..1443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14555 1267..1443 +
1622815584.0604756-CDS-L-elsbetiae_contig14555:2042..21561622815584.0604756-CDS-L-elsbetiae_contig14555:2042..2156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14555 2043..2156 +
1691682974.046713-CDS-L-elsbetiae_contig14555:2042..21561691682974.046713-CDS-L-elsbetiae_contig14555:2042..2156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14555 2043..2156 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14555.3332.1prot_L-elsbetiae_contig14555.3332.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14555 1267..2156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14555.3332.1

>prot_L-elsbetiae_contig14555.3332.1 ID=prot_L-elsbetiae_contig14555.3332.1|Name=mRNA_L-elsbetiae_contig14555.3332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
LSQSREQKFRVSDATTVALFGFRTHFGGGKSTGFCLIYDSIEDMKKFEPK
FRLARAGLQDKKETSRKQIKEAKNRSKKIRGTGRRIAKHKAKKAAK*
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mRNA from alignment at L-elsbetiae_contig14555:1267..2156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14555.3332.1 ID=mRNA_L-elsbetiae_contig14555.3332.1|Name=mRNA_L-elsbetiae_contig14555.3332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=890bp|location=Sequence derived from alignment at L-elsbetiae_contig14555:1267..2156+ (Laminarionema elsbetiae ELsaHSoW15)
CTATCTCAATCACGCGAGCAGAAGTTCCGCGTGTCGGACGCGACGACGGT
GGCGCTGTTCGGCTTCCGGACCCACTTCGGTGGGGGCAAGAGCACCGGCT
TCTGCCTCATCTACGACAGCATTGAGGACATGAAGAAGTTCGAACCGAAG
TTCAGGCTCGCACGTGCCGGTCTCCAGGTGGGTGGAGGATGCCACCCTCT
GTTGTTTTTTGTTCGTTTGCCTTGCATGTATCCTTGCTTACACCTACATA
CACGAAGTATATGTTATTTTTGCGAGACGTGTCATTTATTTTTCATGTGT
CGAATTACGTACAATATGCAGTGGTTGCTCTCGCTCTTATATCGACTTGC
TGCGAAGGCAGATATGCCCGTTGTCGTCCAGGAGTATGTTGGCACCCCTC
GCCGATGCAGATTTGCGCGTCAGACCGCGGGGAGAGGTATCGATACTTGG
TCCCCCAAGAGGGCAAGCGATTCGCGGCGAATTCCCACGTTTTTGGCCAA
GTGGTGTTCGTCGCTTCCGATCCCCATGTTGTTTTTTCAGTTTGAATCGC
TTGATTTTTGTTGTCATGAGTACACATGCACGCATAGCGTGCGAAGTGAG
AGAGCAATGGACCAACTTCCTTGGGGCTGATCAAGATAATTGGTCTTGAA
GCATGCCCATTCGGAGGCGTAGGTGTTTGTGAGCATGCTTGAGATGTTTT
ATTTTACTTTCGCAGAAAGCCAAACTCTGCCCGTTTTTTGTCTCGGCATT
CATGGACTATTTTTCTCGTGTTGCAGGACAAGAAGGAGACCTCGCGCAAG
CAGATCAAGGAGGCGAAGAACCGGTCCAAGAAGATCCGTGGCACCGGCCG
CCGGATCGCGAAGCACAAGGCCAAGAAGGCCGCCAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14555:1267..2156+

>mRNA_L-elsbetiae_contig14555.3332.1 ID=mRNA_L-elsbetiae_contig14555.3332.1|Name=mRNA_L-elsbetiae_contig14555.3332.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig14555:1267..2156+ (Laminarionema elsbetiae ELsaHSoW15)
CTATCTCAATCACGCGAGCAGAAGTTCCGCGTGTCGGACGCGACGACGGT
GGCGCTGTTCGGCTTCCGGACCCACTTCGGTGGGGGCAAGAGCACCGGCT
TCTGCCTCATCTACGACAGCATTGAGGACATGAAGAAGTTCGAACCGAAG
TTCAGGCTCGCACGTGCCGGTCTCCAGCTATCTCAATCACGCGAGCAGAA
GTTCCGCGTGTCGGACGCGACGACGGTGGCGCTGTTCGGCTTCCGGACCC
ACTTCGGTGGGGGCAAGAGCACCGGCTTCTGCCTCATCTACGACAGCATT
GAGGACATGAAGAAGTTCGAACCGAAGTTCAGGCTCGCACGTGCCGGTCT
CCAGGACAAGAAGGAGACCTCGCGCAAGCAGATCAAGGAGGCGAAGAACC
GGTCCAAGAAGATCCGTGGCACCGGCCGCCGGATCGCGAAGCACAAGGCC
AAGAAGGCCGCCAAGTAGGACAAGAAGGAGACCTCGCGCAAGCAGATCAA
GGAGGCGAAGAACCGGTCCAAGAAGATCCGTGGCACCGGCCGCCGGATCG
CGAAGCACAAGGCCAAGAAGGCCGCCAAGTAG
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