mRNA_L-elsbetiae_contig14550.3331.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14550.3331.1
Unique NamemRNA_L-elsbetiae_contig14550.3331.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14550.3331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14550contigL-elsbetiae_contig14550:1145..2560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14550.3331.1prot_L-elsbetiae_contig14550.3331.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14550 1145..2553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.973705-CDS-L-elsbetiae_contig14550:1144..13811622815583.973705-CDS-L-elsbetiae_contig14550:1144..1381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14550 1145..1381 -
1691682973.9957228-CDS-L-elsbetiae_contig14550:1144..13811691682973.9957228-CDS-L-elsbetiae_contig14550:1144..1381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14550 1145..1381 -
1622815583.9899707-CDS-L-elsbetiae_contig14550:2439..25531622815583.9899707-CDS-L-elsbetiae_contig14550:2439..2553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14550 2440..2553 -
1691682974.0079105-CDS-L-elsbetiae_contig14550:2439..25531691682974.0079105-CDS-L-elsbetiae_contig14550:2439..2553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14550 2440..2553 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.0041585-UTR-L-elsbetiae_contig14550:2553..25601622815584.0041585-UTR-L-elsbetiae_contig14550:2553..2560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14550 2554..2560 -
1691682974.0239792-UTR-L-elsbetiae_contig14550:2553..25601691682974.0239792-UTR-L-elsbetiae_contig14550:2553..2560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14550 2554..2560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14550.3331.1

>prot_L-elsbetiae_contig14550.3331.1 ID=prot_L-elsbetiae_contig14550.3331.1|Name=mRNA_L-elsbetiae_contig14550.3331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MAEEVVEGVPLVRPVKCDVVVHPGSPAKLGLGGEDWEVPIPLTERARFLP
AFTVQLKDAHDNACPKRAVKDVTVSCLEPGAFTVWHPKSDIATYELPQQQ
QQSGDPGAGRGPVMFSD
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mRNA from alignment at L-elsbetiae_contig14550:1145..2560-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14550.3331.1 ID=mRNA_L-elsbetiae_contig14550.3331.1|Name=mRNA_L-elsbetiae_contig14550.3331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig14550:1145..2560- (Laminarionema elsbetiae ELsaHSoW15)
GAGGGTCATGGCCGAGGAGGTTGTGGAGGGCGTCCCCCTCGTGAGGCCCG
TGAAGTGCGACGTCGTCGTGCACCCCGGCAGCCCCGCCAAGCTCGGGCTC
GGAGGGGAGGACTGGGAGGTGGTGAGAGGATTAATTACTCCGTATATATC
TGTCATCGACAACGCTTCCGTGTGACCACGGTTCAGTGCCCTGGCAAGAT
GTCCTCGTGACAGGGAGCCAGCCCATCGAGCACTGGAAATAAATACTACT
ACAGTCAGGCAGTTTTTTTTTTTTTTTTTTTCTTGTTTGGTTTTGTGAGA
CTCTTTAAATTCCTNNNNNNNNNNGGTGGTTGGGACGGGTAGCATTCCCT
TCGTTCACTGGAAATAAACACTCCTTCCGTCGGGCGGTTTTTTTTTTTTT
TTTTTTTGAAAATGATATGTTTGACGCGGTGTACCTTAAGTGTGGCGCAG
TGGAGAGAACCTGGGTTATACATATGAAATTTCGCGGACGTTAGGAGCAG
GATCACTCCGTATATATCTGTTACCGACAACGCAAGTGAAGAATTATTCC
CTGTGTATCGACGACGCAAGTGGAGAATCACTCCCTCCCTGTGTACCGAC
AGCAGCGCAAATGTGTAGAGAGGCCATAGCTTCATTCATTCGTCCGAGGA
AATTCGTAAATAGAGCCAAAATGGGAGGGAAAACATAAAATATGAGTCAT
CGCACAAAACGCGATTGGACAAATCGATCGTTGTGCACGGAGCGGACCAT
GAACACGTATCCCCACCCTTACTATTATTATTTTTTTTTTGCCATCCGAC
AAAAATTAATTGCAGATGTATCCAACCAAAATTTCTTCCAAACTGATGAT
GCTATTCTTGCATGCTCGAACACATTGCGTAGATTGCACAAACTGTCAAC
ACTATGTACCATTCCTGTGTCCCACGTCGGACCAATGGGCACGCACACAC
CCGCTGGGTCTGTCGGCCCCCCTCCCTTGTTCTCCCCGTTTCTCTTGCTG
TTGTGTTGTGTCTCTCGCAAAAATATAAAAGCCCATCCCTCTCACCGTCC
AGCTCAAATTGTTGTGCACGCACCGGCCCAATGCTCTCGCAAAAAACAAA
AAAAATGCCCCCTCCCTTGTTCTCTCCGTTCTCCTTTTTGTTATGTTGTC
TCGCATAAAAAAAAAATAAAAAAAAACAGCCCATCCCTCTCACGGAGAGG
GCGCGGTTCCTTCCGGCCTTCACCGTCCAGCTGAAAGACGCCCACGACAA
CGCGTGCCCCAAGAGAGCCGTGAAGGACGTGACAGTCTCGTGCCTGGAGC
CGGGGGCGTTCACGGTCTGGCACCCGAAGTCTGATATCGCGACGTACGAA
CTGCCGCAGCAGCAGCAGCAGAGCGGGGATCCTGGCGCCGGCAGAGGCCC
CGTGATGTTCAGTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14550:1145..2560-

>mRNA_L-elsbetiae_contig14550.3331.1 ID=mRNA_L-elsbetiae_contig14550.3331.1|Name=mRNA_L-elsbetiae_contig14550.3331.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig14550:1145..2560- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGAGGAGGTTGTGGAGGGCGTCCCCCTCGTGAGGCCCGTGAAGTG
CGACGTCGTCGTGCACCCCGGCAGCCCCGCCAAGCTCGGGCTCGGAGGGG
AGGACTGGGAGGTGATGGCCGAGGAGGTTGTGGAGGGCGTCCCCCTCGTG
AGGCCCGTGAAGTGCGACGTCGTCGTGCACCCCGGCAGCCCCGCCAAGCT
CGGGCTCGGAGGGGAGGACTGGGAGGTGCCCATCCCTCTCACGGAGAGGG
CGCGGTTCCTTCCGGCCTTCACCGTCCAGCTGAAAGACGCCCACGACAAC
GCGTGCCCCAAGAGAGCCGTGAAGGACGTGACAGTCTCGTGCCTGGAGCC
GGGGGCGTTCACGGTCTGGCACCCGAAGTCTGATATCGCGACGTACGAAC
TGCCGCAGCAGCAGCAGCAGAGCGGGGATCCTGGCGCCGGCAGAGGCCCC
GTGATGTTCAGTGATCCCATCCCTCTCACGGAGAGGGCGCGGTTCCTTCC
GGCCTTCACCGTCCAGCTGAAAGACGCCCACGACAACGCGTGCCCCAAGA
GAGCCGTGAAGGACGTGACAGTCTCGTGCCTGGAGCCGGGGGCGTTCACG
GTCTGGCACCCGAAGTCTGATATCGCGACGTACGAACTGCCGCAGCAGCA
GCAGCAGAGCGGGGATCCTGGCGCCGGCAGAGGCCCCGTGATGTTCAGTG
AT
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