mRNA_L-elsbetiae_contig14545.3326.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14545.3326.1
Unique NamemRNA_L-elsbetiae_contig14545.3326.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14545.3326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14545contigL-elsbetiae_contig14545:2977..3458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14545.3326.1prot_L-elsbetiae_contig14545.3326.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14545 3090..3410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.4697838-UTR-L-elsbetiae_contig14545:2976..30891622815583.4697838-UTR-L-elsbetiae_contig14545:2976..3089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 2977..3089 +
1691682973.6734376-UTR-L-elsbetiae_contig14545:2976..30891691682973.6734376-UTR-L-elsbetiae_contig14545:2976..3089Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 2977..3089 +
1622815583.5011337-UTR-L-elsbetiae_contig14545:3410..34581622815583.5011337-UTR-L-elsbetiae_contig14545:3410..3458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 3411..3458 +
1691682973.6986036-UTR-L-elsbetiae_contig14545:3410..34581691682973.6986036-UTR-L-elsbetiae_contig14545:3410..3458Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 3411..3458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.4831252-CDS-L-elsbetiae_contig14545:3089..34101622815583.4831252-CDS-L-elsbetiae_contig14545:3089..3410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14545 3090..3410 +
1691682973.6871047-CDS-L-elsbetiae_contig14545:3089..34101691682973.6871047-CDS-L-elsbetiae_contig14545:3089..3410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14545 3090..3410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14545.3326.1

>prot_L-elsbetiae_contig14545.3326.1 ID=prot_L-elsbetiae_contig14545.3326.1|Name=mRNA_L-elsbetiae_contig14545.3326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MYNRRHPVSAAVNEATIYTHQVDHLPVPPLCQKGHTPTQNHRLRPSDMFV
GVLGDVSLLSTSPRRWSLLSSWASPLVLSARCRAVFWAPPTGVFAPPPPL
RPPVPQ*
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mRNA from alignment at L-elsbetiae_contig14545:2977..3458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14545.3326.1 ID=mRNA_L-elsbetiae_contig14545.3326.1|Name=mRNA_L-elsbetiae_contig14545.3326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig14545:2977..3458+ (Laminarionema elsbetiae ELsaHSoW15)
TTATATTTTGCGGTTGTCCGAGCGTTAGTGGGGCAGTGCGAGCGAGGGCG
CCCCTTGATTTTTGTTTATGTCGGGCCAGGAAGCTGAAGGCTGCGGTGGT
GGGTATCAAGAGTATGTACAATAGGCGGCACCCGGTGTCCGCCGCCGTGA
ATGAAGCAACTATTTACACACACCAAGTCGACCATCTTCCGGTGCCCCCT
CTGTGCCAGAAGGGTCATACCCCCACCCAGAACCACAGACTGCGGCCATC
AGACATGTTTGTCGGGGTGCTCGGAGATGTCTCCCTCCTCTCCACCTCTC
CTCGCCGCTGGAGCTTATTATCGTCCTGGGCATCCCCCCTCGTGCTTTCT
GCCCGCTGCCGTGCTGTCTTTTGGGCGCCGCCCACGGGCGTGTTCGCTCC
TCCTCCTCCTCTGCGCCCCCCTGTACCTCAGTAGCCGACCTGAGAACGTC
GCTAGAGGACGCGAGCTTTGAGGATGCCTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14545:2977..3458+

>mRNA_L-elsbetiae_contig14545.3326.1 ID=mRNA_L-elsbetiae_contig14545.3326.1|Name=mRNA_L-elsbetiae_contig14545.3326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig14545:2977..3458+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACAATAGGCGGCACCCGGTGTCCGCCGCCGTGAATGAAGCAACTAT
TTACACACACCAAGTCGACCATCTTCCGGTGCCCCCTCTGTGCCAGAAGG
GTCATACCCCCACCCAGAACCACAGACTGCGGCCATCAGACATGTTTGTC
GGGGTGCTCGGAGATGTCTCCCTCCTCTCCACCTCTCCTCGCCGCTGGAG
CTTATTATCGTCCTGGGCATCCCCCCTCGTGCTTTCTGCCCGCTGCCGTG
CTGTCTTTTGGGCGCCGCCCACGGGCGTGTTCGCTCCTCCTCCTCCTCTG
CGCCCCCCTGTACCTCAGTAGATGTACAATAGGCGGCACCCGGTGTCCGC
CGCCGTGAATGAAGCAACTATTTACACACACCAAGTCGACCATCTTCCGG
TGCCCCCTCTGTGCCAGAAGGGTCATACCCCCACCCAGAACCACAGACTG
CGGCCATCAGACATGTTTGTCGGGGTGCTCGGAGATGTCTCCCTCCTCTC
CACCTCTCCTCGCCGCTGGAGCTTATTATCGTCCTGGGCATCCCCCCTCG
TGCTTTCTGCCCGCTGCCGTGCTGTCTTTTGGGCGCCGCCCACGGGCGTG
TTCGCTCCTCCTCCTCCTCTGCGCCCCCCTGTACCTCAGTAG
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