mRNA_L-elsbetiae_contig14525.3319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14525.3319.1
Unique NamemRNA_L-elsbetiae_contig14525.3319.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14525.3319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14525contigL-elsbetiae_contig14525:3405..4485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001890.2
Exons2
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.901291-CDS-L-elsbetiae_contig14525:3404..35361622815582.901291-CDS-L-elsbetiae_contig14525:3404..3536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14525 3405..3536 -
1691682973.3668888-CDS-L-elsbetiae_contig14525:3404..35361691682973.3668888-CDS-L-elsbetiae_contig14525:3404..3536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14525 3405..3536 -
1622815582.9144158-CDS-L-elsbetiae_contig14525:4341..44851622815582.9144158-CDS-L-elsbetiae_contig14525:4341..4485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14525 4342..4485 -
1691682973.3777447-CDS-L-elsbetiae_contig14525:4341..44851691682973.3777447-CDS-L-elsbetiae_contig14525:4341..4485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14525 4342..4485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14525.3319.1prot_L-elsbetiae_contig14525.3319.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14525 3405..4485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14525.3319.1

>prot_L-elsbetiae_contig14525.3319.1 ID=prot_L-elsbetiae_contig14525.3319.1|Name=mRNA_L-elsbetiae_contig14525.3319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
DRPNGGSVVSSTSYDSGASNVFGSSSEGVFIAAALELALLVGRQDSDEIL
MFQRDASTGVLSSATTTYLASLTETVSGTIAGIFLSSDGTTD
back to top

mRNA from alignment at L-elsbetiae_contig14525:3405..4485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14525.3319.1 ID=mRNA_L-elsbetiae_contig14525.3319.1|Name=mRNA_L-elsbetiae_contig14525.3319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1081bp|location=Sequence derived from alignment at L-elsbetiae_contig14525:3405..4485- (Laminarionema elsbetiae ELsaHSoW15)
GACAGACCTAATGGCGGCAGTGTCGTTTCGAGCACCAGCTACGATTCCGG
AGCCTCTAATGTTTTCGGAAGCTCTTCGGAGGGGGTTTTCATCGCAGCGG
CCCTCGAGCTGGCGCTGTTGGTTGGCCGCCAAGATTCGGATGAGGTACAT
AGAAACCGTGAGACGACACACCTCTGACTATATTTACGACCCAGATTTAC
CCGACACTACGCAAGTATCCTTTGGAAAAAAAAACGTTGGTTCGAGATTT
TCTTCAGGAGTTCTGATAGCTACACCGATAGTCACAATGGGTGCGCACCA
TACTGCATGGAAACAGACTGTTGACATTGCAGAACATCCCACCTTTCGCG
GGGCGAAACGTTCCCTTCGAGTATGCTTCTATCAATTTCGCATTGAGCCC
AAAGAAGCGGAATTGCCATTAACTTCAACGATGTTTTCGCGAAGAGGCAT
ACGTTTCACAACAAAGGCATGCCCCTCCGCAAGAGAGAGGAACGAAAAAT
GGGCCGCAGGGCGTCGAGACCTTGAAAACAACGCCTCCAGCGCATATCGA
CACGCGCGTGCGCGGCTCTTCCGCCGCGTCCTTACCTAAGACAAGAATAC
GACATGGCCGACAAAACGCGGCCGGTTGAGTCGATGACGATGTGCTCGCG
GGTACTGTCTTTTGGAACGCGGGCGAGCTGTGGGCGTCGTTCTTTCCTCG
GAGCTCTGTTTTTTTTCACAGTGTTTGTGCTTCGACCTCCGCTTCGAGAC
CAGTCTGCTTGGTAAACAATTTGGGTGTCGAACGTCGTCCCGTCGCGGGG
TGGGAGCCCCTCATCGATTAAACGTCAAACCCTGTCCAACAACAGGTTCC
CTTCCATTTTTGGCTGTTTGGCTCTTATGTATATACAATTTACCACGTTT
TCCAGTTTTCCAGCTGTTGCATACTGCTGCTGTGTCGTGCTGATCGCAGA
TTTTGATGTTTCAGCGGGATGCCTCCACCGGGGTGTTGTCTTCTGCGACG
ACGACTTATCTTGCGAGTCTGACGGAAACGGTCAGTGGCACCATCGCTGG
GATATTCTTATCTTCCGACGGTACAACGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14525:3405..4485-

>mRNA_L-elsbetiae_contig14525.3319.1 ID=mRNA_L-elsbetiae_contig14525.3319.1|Name=mRNA_L-elsbetiae_contig14525.3319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig14525:3405..4485- (Laminarionema elsbetiae ELsaHSoW15)
GACAGACCTAATGGCGGCAGTGTCGTTTCGAGCACCAGCTACGATTCCGG
AGCCTCTAATGTTTTCGGAAGCTCTTCGGAGGGGGTTTTCATCGCAGCGG
CCCTCGAGCTGGCGCTGTTGGTTGGCCGCCAAGATTCGGATGAGGACAGA
CCTAATGGCGGCAGTGTCGTTTCGAGCACCAGCTACGATTCCGGAGCCTC
TAATGTTTTCGGAAGCTCTTCGGAGGGGGTTTTCATCGCAGCGGCCCTCG
AGCTGGCGCTGTTGGTTGGCCGCCAAGATTCGGATGAGATTTTGATGTTT
CAGCGGGATGCCTCCACCGGGGTGTTGTCTTCTGCGACGACGACTTATCT
TGCGAGTCTGACGGAAACGGTCAGTGGCACCATCGCTGGGATATTCTTAT
CTTCCGACGGTACAACGGACATTTTGATGTTTCAGCGGGATGCCTCCACC
GGGGTGTTGTCTTCTGCGACGACGACTTATCTTGCGAGTCTGACGGAAAC
GGTCAGTGGCACCATCGCTGGGATATTCTTATCTTCCGACGGTACAACGG
AC
back to top