mRNA_L-elsbetiae_contig1452.3316.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1452.3316.1 vs. uniprot
Match: D8LBK0_ECTSI (Bromodomain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK0_ECTSI) HSP 1 Score: 585 bits (1509), Expect = 6.910e-180 Identity = 420/708 (59.32%), Postives = 461/708 (65.11%), Query Frame = 1 Query: 13 KNRLHESVDVWGVSAKLRQYLETKKAARERAENXXXXXXXXXXXXXXXGARGGRTETFVNERRREEAERIRGQLERVARPSQWQSCHAAREEWLKTETAALRDFLPVGAAGSGGAAEDYRFVAASARQQRLFARAMELRLGEYLETYDDERTLAIEEAYRNGDIDQQLGLGLHAAGGXXXXVAXXXXXXXFVGPAAPEGVAGAGVAGGETVKVEGGGAGLCTESGAGAAGSTVAXXXXXXXVEGSA-GKPNAEGGPESLSPRPGSSSWAGFDEDDSSMSRTYWEPSVAPVGLVSPEMVKLKVEMLAMALCLPQKWERINAVRSVSSRGRLRQRPAGYNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAETLAPGEFFATSRGIAPELTAALREAVAANEAYAKEVAPA-------NGGVGADDGVEGDDDDHV-DVGM------GDPAIAAAVAAETLG----------AXXXXXXXXXXXXXXXXQAPEPAVPDQPFVRKAQGKWASVESSSDEEDFGEAAEAEAGGEAEAAGTVSMPLDLEDWRERVRRAETAEGLANLALELDYAVPREEGWLEAWYKTESFAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPRKGGSRLPGHLPRVWTFFYQCPLSPTCIRPCNHKGKCKLHRTAVTRVDHPMVVPSAPYTPPSYLHQAAVAHAA 2061 +NRLHE+VDVWGVS K+ YL+ KKAA XXXXXXXXXX G T + +RR+EEA+RIRG LERV PSQWQ+CH AR+ WL TE +L +FLPV AAGSG A D+RFV S RQQRLFAR++ELRLGEYLETYDDER A+E AYRNGDID+Q L A GGXXXX XXXXXXX XXXXXXX+EG+A G +GGPE+LSPRPGS+S GFDEDD + SRTYWEPSVAPVGLVSPEMVKLKVEMLA+ALCLPQ+WER+NAVRSVSSRGR+RQRPAGY N XXXXXXXXXXXXXXXXXXXXXX S +APGEFF SR IAPEL AAL+EAV EAY +VA A V+G V D+GM G T G A APEP VPDQPFVRKAQGKWASVESSSDEEDFG VSM +DLEDWRERVRRA+ E LA LALELDYA+PREEGWLE WYKTE+FAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPR+GGSRLPG LPR W+FFYQCPLSP C+RPC HKGKCK HRT VTRVDHPM+VP + P YL Q A AA Sbjct: 1801 RNRLHEAVDVWGVSDKVDLYLKAKKAAXXXXXXXXXXXXXXXXGSKSGRKGEGGATTNLEDRRKEEADRIRGHLERVNGPSQWQTCHNARDSWLATECRSLEEFLPVKAAGSGDVAADHRFVLGSVRQQRLFARSVELRLGEYLETYDDERMKAVESAYRNGDIDRQ---NLLAVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXLEGAAAGAKTRKGGPETLSPRPGSASLPGFDEDDLNTSRTYWEPSVAPVGLVSPEMVKLKVEMLAVALCLPQQWERVNAVRSVSSRGRIRQRPAGYENDDXXXXXXXXXXXXXXXXXXXXXXAGAAPDGQRPI---------SPVAMAPGEFFQPSRVIAPELAAALKEAVEEQEAYKTQVAEAATSXXXXXXXXXXXXXVDGXXXXEVVDIGMDVANTDGGAGXXXXXXXXTEGLSGDRPGSGTAEAAPGEAPPVSPAKPKVAPEPVVPDQPFVRKAQGKWASVESSSDEEDFG--------------AVVSMLVDLEDWRERVRRADATEQLAILALELDYAIPREEGWLEQWYKTENFAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPRRGGSRLPGDLPRAWSFFYQCPLSPLCMRPCMHKGKCKAHRTMVTRVDHPMIVPEST-EPAPYLAQHATGQAA 2477
BLAST of mRNA_L-elsbetiae_contig1452.3316.1 vs. uniprot
Match: A0A6H5KEI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI4_9PHAE) HSP 1 Score: 508 bits (1309), Expect = 1.220e-157 Identity = 428/1017 (42.08%), Postives = 486/1017 (47.79%), Query Frame = 1 Query: 13 KNRLHESVDVWGVSAKLRQYLETKKAARERAENXXXXXXXXXXXXXXXGARG-GRTETFVNERRREEAERIRGQLERVARPSQWQSCHAAREEWLKTETAALRDFLPVGAAGSGGAAEDYRFVAASARQQRLFARAMELRLGEYLETYDDERTLAIEEAYRNGDIDQQLGLGLH----------------------AAGGXXXXVAXXXXXXXFVGPA---AP-------EGVAGAGVAGGETVK--VEGGG-------------------------------------------AGLCTESGAG--------------------------------------AAGSTVAXXXXXXXVEGSAGKPNAEGGPESLSPRPGSSSWAGFDEDDSSMSRTYWEPSVAPVGLVSPEMVKLKVEMLAMALCLPQKWERINAVRSVSSRGRLRQRPAGYNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAETLAPGEFFATSRGIAPELTAALREAVAANEAYAKEVAPANGGV-------GADDGVEGDDDDHV-DVGM-------GDPAIAAAVAAETLGAXXXXXXXXXXXXXXXXQ---APEPAVPDQPFVRKAQGKWASVESSSDEEDFGEAAEAEA---------------------------------------------GGE---------------------------------------------------------------------------------------------------------------AEAAGT---------------------------------------------VSMPLDLEDWRERVRRAETAEGLANLALELDYAVPREEGWLEAWYKTESFAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPRKGGSRLPGHLPRVWTFFYQCPLSPTCIRPCNHKGKCKLHRTAVTRVDHPMVVPSAPYTPPSYLHQAAVAHA 2058 +NRLHE+VDVWGVS K+ YL+ +KAA XXXXXXXXXXX G +G G T + +RR+EEA+RIRG LERV PSQWQ+CH AR+ WL TE +L +FLPV AAGSG A D+RFV S RQQRLFAR++ELRLGEYLETYDDER A+E AYRNGDID+ L + H +A + P P EG+A G + T VE AGL SG G A G +VA +EG+A +GGPE+LSPRPGS+S GFDEDD + SRTYWEPSVAPVGLVSPEMVKLKVEMLA+ALCLPQ+WER+NAVRSVSSRGR+RQRPAGY N XXXXXXXXXXXXXXXXXXX S +APGEFF SR IAPEL AAL+EAV EAY +VA A G + V+GDD+D V D+GM G A A ++ + G+ + APEP +PDQPFVRKAQGKWASVESSSDEEDFG E EA GG+ A AA VSMP+DLEDWRERVRRA+ E LA LALELDYA+PREEGWLE WYKTE+FAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPR+GGSRLPG LPR W+FFYQCPLSP C+RPC HKGKCK HRT VTRVDHPM+VP + P YL Q A A Sbjct: 225 RNRLHEAVDVWGVSDKVDLYLKAQKAAXXXXXXXXXXXXXXXXXGSKSGRKGEGGATTNLEDRRKEEADRIRGHLERVLGPSQWQTCHKARDSWLATECRSLEEFLPVKAAGSGDVAADHRFVLGSIRQQRLFARSVELRLGEYLETYDDERMKAVESAYRNGDIDR-LRMEKHRLKRDLADEPADNADGEGWVRTTLSAATRDIAAETRALRMLHPPDMRTPAQKRKDVEGLAAGGPSAIATAADAVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLALGSGQGXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGMSVALS-----LEGAA--KTRKGGPETLSPRPGSASLPGFDEDDLNTSRTYWEPSVAPVGLVSPEMVKLKVEMLAVALCLPQQWERVNAVRSVSSRGRIRQRPAGYENDDDASXXXXXXXXXXXXXXXXXXXAGAAPDGQRPI---------SPVAMAPGEFFQPSRVIAPELAAALKEAVEEQEAYKTQVAEAATSAXXXXXAGGKEAAVDGDDEDEVVDIGMDVANTGGGGGAGAEGLSGDRPGSGAAEAAPGGAPPVSPAKPEVAPEPVIPDQPFVRKAQGKWASVESSSDEEDFGAVGEDEAIVEEVDAVDEEATAXXXXXXXXXXXXXXXXXXXXXXPATNSPEVSGGDPSDMAVSTPEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSFAXXXXXXXXXXXXXXXXXXXXXXXXXPPATLAPSVRPPAQPEALIQVTAAAAEVQPKPEQQATQXXXXXXXXXXXXXXXXXVLPITLPPPAPEPPRVQVVSMPVDLEDWRERVRRADATEQLAILALELDYAIPREEGWLEQWYKTENFAEPRLGGGSSLAAAATRVFALDRALRWDIIPRPRRGGSRLPGDLPRAWSFFYQCPLSPLCMRPCMHKGKCKAHRTMVTRVDHPMIVPESTEAAP-YLAQHATGQA 1223
BLAST of mRNA_L-elsbetiae_contig1452.3316.1 vs. uniprot
Match: A0A836CNY5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNY5_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.480e-24 Identity = 62/137 (45.26%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 1594 VSMPLDLEDWRERVRRAETAEGLANLALELDYAVPREEGWLEAWYKTESFAEPRLGGGSSLAAAATRVFALDRALRWDIIPR--PRKGGSRLPGHLPRVWTFFYQCPLSPTCIRPCNHKGKCKLHRTAVTRVDHPMV 1998 ++PLDL WRERVR A A L +LA ELD A+PR+ GWL W+ A ++LAAAA R++ LDRAL+W+ IP +G LP HLPR F QCPL P C H G+C R +RV P+V Sbjct: 2669 AALPLDLRAWRERVRAATAASELVDLAEELDAALPRDRGWLAPWFVAAPLALRDSSNAATLAAAAARIYTLDRALQWEAIPARFDARGARVLPRHLPRHHCFNGQCPLVPLCTERVGHLGRCTTSRNNFSRVGPPLV 2805 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1452.3316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1452.3316.1 >prot_L-elsbetiae_contig1452.3316.1 ID=prot_L-elsbetiae_contig1452.3316.1|Name=mRNA_L-elsbetiae_contig1452.3316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=885bp KKKKKNRLHESVDVWGVSAKLRQYLETKKAARERAENAAGGGGGIGGWGVback to top mRNA from alignment at L-elsbetiae_contig1452:64..6674+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1452.3316.1 ID=mRNA_L-elsbetiae_contig1452.3316.1|Name=mRNA_L-elsbetiae_contig1452.3316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6611bp|location=Sequence derived from alignment at L-elsbetiae_contig1452:64..6674+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1452:64..6674+ >mRNA_L-elsbetiae_contig1452.3316.1 ID=mRNA_L-elsbetiae_contig1452.3316.1|Name=mRNA_L-elsbetiae_contig1452.3316.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5310bp|location=Sequence derived from alignment at L-elsbetiae_contig1452:64..6674+ (Laminarionema elsbetiae ELsaHSoW15)back to top |