mRNA_L-elsbetiae_contig1451.3311.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1451.3311.1
Unique NamemRNA_L-elsbetiae_contig1451.3311.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Match: A0A6H5LP07_9PHAE (SMP-LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LP07_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 8.540e-61
Identity = 153/266 (57.52%), Postives = 168/266 (63.16%), Query Frame = 1 
Query:    4 PWSRGEAQSPPGASSWVSFVVVLNIVGSLFIWEFSAA----------SGITLPALSAVRGGVT---ESN------------GNTR--PSTVLIDADDVIDEMALASRQQPGTDSSEQVFKSTHVYRPSPAIRRKRTRS---KSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVDGVEYVSAKSPREVPGITDTWRLVAKGLRKTGETVYDFGVAAENVTAEATEAAEETIRTVVGSVIESAS 711
            PW R    +P        F +VL+ +    +    ++          SG+ LPA   VRGGVT   E N            GNT   P  VLIDA+D+ID MA AS Q+ GTD+ EQVFK THVYR     R KRT S   +SRL +EGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVD                  TWR VAKGLRKT ETVYDFGVAAENVTAEATE AEETIR+VVGSVI  AS
Sbjct:   11 PWPRARKMAP--------FALVLHTLALQLLCSLGSSXXXXXXXXXXSGLYLPA--GVRGGVTPAIEENHRSREEEQAGGQGNTTIPPRAVLIDANDIIDAMAQASGQRSGTDAHEQVFKQTHVYRSQVHHRSKRTMSNSGRSRLRREGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVD------------------TWRFVAKGLRKTAETVYDFGVAAENVTAEATEVAEETIRSVVGSVINPAS 248
[Close]
BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Match: A0A836CIY7_9STRA (SMP-LTD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.960e-16
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 1 
Query:  337 KSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVDGVEYVSAKS----PREVPGITDTWRLVAKGLRKTGETVYDFGVAAENVTAEATEAAEETIR 678
            KS+L +EG  +   L  V+   ++G+ RAVNVTGT A+ VAG  FKLAGAAV+DA  G+EY  A++    P +VP +     LVAK L+K+G+ VY  G  AEN T EA   AE+ +R
Sbjct:   86 KSQLQREGKVVFGKLFKVSRHASHGVCRAVNVTGTTAATVAGSLFKLAGAAVMDASQGLEYAQARACAAAPMKVPVLDKGVTLVAKSLKKSGDFVYRLGELAENATTEAVGMAEDAVR 203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LP07_9PHAE8.540e-6157.52SMP-LTD domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CIY7_9STRA2.960e-1647.46SMP-LTD domain-containing protein n=1 Tax=Tribonem... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1451contigL-elsbetiae_contig1451:7979..11060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009200.1
Exons5
Model size734
Cds size732
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1451.3311.1prot_L-elsbetiae_contig1451.3311.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1451 7979..11060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.247776-CDS-L-elsbetiae_contig1451:7978..80531622815582.247776-CDS-L-elsbetiae_contig1451:7978..8053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 7979..8053 -
1691682972.9298408-CDS-L-elsbetiae_contig1451:7978..80531691682972.9298408-CDS-L-elsbetiae_contig1451:7978..8053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 7979..8053 -
1622815582.260822-CDS-L-elsbetiae_contig1451:8523..86211622815582.260822-CDS-L-elsbetiae_contig1451:8523..8621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 8524..8621 -
1691682972.9421191-CDS-L-elsbetiae_contig1451:8523..86211691682972.9421191-CDS-L-elsbetiae_contig1451:8523..8621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 8524..8621 -
1622815582.2705202-CDS-L-elsbetiae_contig1451:9113..91671622815582.2705202-CDS-L-elsbetiae_contig1451:9113..9167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 9114..9167 -
1691682972.9509919-CDS-L-elsbetiae_contig1451:9113..91671691682972.9509919-CDS-L-elsbetiae_contig1451:9113..9167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 9114..9167 -
1622815582.2805288-CDS-L-elsbetiae_contig1451:9486..96561622815582.2805288-CDS-L-elsbetiae_contig1451:9486..9656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 9487..9656 -
1691682972.9603488-CDS-L-elsbetiae_contig1451:9486..96561691682972.9603488-CDS-L-elsbetiae_contig1451:9486..9656Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 9487..9656 -
1622815582.2912962-CDS-L-elsbetiae_contig1451:10725..110601622815582.2912962-CDS-L-elsbetiae_contig1451:10725..11060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 10726..11060 -
1691682972.9714928-CDS-L-elsbetiae_contig1451:10725..110601691682972.9714928-CDS-L-elsbetiae_contig1451:10725..11060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1451 10726..11060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1451.3311.1

>prot_L-elsbetiae_contig1451.3311.1 ID=prot_L-elsbetiae_contig1451.3311.1|Name=mRNA_L-elsbetiae_contig1451.3311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MPWSRGEAQSPPGASSWVSFVVVLNIVGSLFIWEFSAASGITLPALSAVR
GGVTESNGNTRPSTVLIDADDVIDEMALASRQQPGTDSSEQVFKSTHVYR
PSPAIRRKRTRSKSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAAS
VVAGGAFKLAGAAVLDAVDGVEYVSAKSPREVPGITDTWRLVAKGLRKTG
ETVYDFGVAAENVTAEATEAAEETIRTVVGSVIESASGNDPGAA
back to top

mRNA from alignment at L-elsbetiae_contig1451:7979..11060-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1451.3311.1 ID=mRNA_L-elsbetiae_contig1451.3311.1|Name=mRNA_L-elsbetiae_contig1451.3311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3082bp|location=Sequence derived from alignment at L-elsbetiae_contig1451:7979..11060- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGGAGCAGGGGCGAGGCTCAATCTCCCCCAGGAGCATCGAGCTG
GGTGTCGTTCGTTGTGGTGCTGAACATCGTGGGGAGTTTGTTTATTTGGG
AGTTTTCCGCGGCATCTGGCATTACGCTCCCTGCCCTCTCCGCTGTGAGG
GGCGGCGTCACCGAGAGCAATGGCAACACCCGACCCAGCACGGTGTTGAT
CGACGCGGACGATGTGATCGACGAGATGGCCCTGGCCTCTCGCCAGCAAC
CCGGGACGGATTCCAGTGAGCAGGTTTTCAAGTCCACGCACGTCTACAGG
CCTTCACCTGCGATCCGACGCAAGCGGACGAGGAGGTGGGGCAGGAGGAA
AAGAAAGGGCGCGGAAAGAGAGAGAGGGAACGAGAGAGAGAGGGAGAGAG
AGAGAGAGAGAGAGGAGTCGGATGGGGGCATGTATGTGAAGCCTTCCCAT
GTTGAGCTCGAGAGAAAGACAACACAATACAATAGGGTATGACACTGGGT
GCGGATGAAATTCAAATTATTGTTCAACTTACTTTTCCCAGGGTTCGGAC
CCAACAGGCATCACTCTCTCTCCGCCCCGCCGGCTCTCTCTTCAGGTCTT
GGGGCAGAGAGAGTTTAGCCGACTTGCAGGAGTAAGGAGAAATCGCGCCA
GTGCATCGTGCTGAACCGGTCGCCAGATAAAAGAAGCGCTCCCTTTTCCA
GCTTTCCAGCAACTCAGCGACCGACAGATATTTGTTATTTGTTCTTGGTA
TCAACTCTTCTTGCCTCTACCAACCGCTCTGCGCTCATGTATACTTAGTA
TACAGTATACAATTTTTTTTTGTATTGTCTCTGCGCGTACTGGATACATT
ATGTACATGCATGATTTAGCTACAAGCTTTCTCCTTTTTTTCGGGATGAA
CTGAAAAAGCGCGTGTTCCTCGAAGTACCTAGACTATGTACTGCTACCTT
ATAGACTAGCAGTCCCACAAAAAATACCTGTGCCGGGGGTTGAGACCTGT
CCACCTGTCCATGGTATGCTCATCTATAATCTTTATTTTGATTCTTCTCT
GTTGTATGGTGTTTGCCGTGGGCTAAACGCACCTCTCGGTCACCCCTCCT
GGATGTTTACGTTGCAGCACGCCTTTTCAACCAACGCCGCACCAACAGCC
CCGCCGGTCGCCTCGCCCCGCCGACCCCTCTTTCTCCCTTCGGGCAACTC
TGGACATCATCAACATACCACCTTCATCGCACCCCCTTTCCTGCCTGCTC
GCCTCTCTCTCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTATCGGCCACTG
CTGCCGGTTTGTCGTCGCTGGCGGCATCCTCTTAACATTTTGTTTGTCCA
ACAGCAAGTCCCGCCTGGGGCAGGAGGGCGACAGTCTTCTCAGGTCTCTC
AAGACCGTGACAACCCGCACGACGAACGGCCTGGCGCGGGCGGTGAACGT
TACCGGGACGGCCGCGTCGGTGGTGGCGGGCGGGGCATTTAAGCTCGCCG
GGGCGGCGGTGCTTGACGCTGTCGGTGAGAAGAAGAAAGAAGGGGGACAG
TGAGGGAGGGGGGGGGGGGCGCCGCGGGACGCGGAAAGGGAGATTTTTAG
ATGTTTCTCGTTTTGCTGCCCGCCTTGAAGTATCGCGAGTGTCGCGGCCT
TTTAAGACGTTTGATACTGACTAACTGTGTTGTTGCTGTCTGTATGTACC
ACCCGTTTCGGATGTCAGGCACGTGAGCAATTGTCAAATAATGTGGTATT
TTACAGGGTGTCTCTGCTACATACTGTGTTTGTCCAGTGCCGCCGCTGCC
GATACCCCGTGACGCGTTCCATCTGCTCCTTGTTCTGCCGCAGATGGGGT
TGAATACGTCTCCGCCAAGTCCCCAAGAGAGGTGCCTGGCATAACAGGTG
TGTGTGTGTGTGTGTGCGTGCTCCGTGGGCAGGTCGCAGTTGCTCCCGGT
AGCTTGTATGTTGTTGTTGAATGCATTCTCTCAAGCTTCGTCCTTCGCGA
GAGGGACGAGCCGGATTTACTAACAGCAGAGTGGCGACTTGGCCCATCCG
AAGGCCCCAATAACTCATGGCTATTTTGGTTTTCGTCCCCCTGTGTGTGT
GTATTCACCCACGGGACCCCCTTGCCTACGTGTTTGTTAAATTTGAAAGT
TGTCCCCCGCAACTTGTCTACCACTCCCCGTGATGGATGCCGAACTCAGA
CCTCATCAACAACAACGACTCATACACACACACACTCCTCTCCCCGGACT
GCTCTGGCTTTGTTCGGTGCAATCCTTGTCCTTCGGCGTGTCTTATCTCT
GCTATGTTCATAAAAAAAGTCCAACTCCACATCTCCCGTTCTGTCTAGAC
GACCCAACAATAAGGCTAATTTTTTATGAACATCACCAGACACCTGGCGG
CTGGTGGCGAAGGGGCTCAGGAAGACGGGGGAGACGGTTTACGACTTTGG
CGTGGCGGCGGAGAACGTTACTGCGGAGGCCACGGAGGTATGCATGTATG
GACCTCTGCGTACCTACTTGGTTGAAAGTGCATGGGCGCGGTGTGAGGCT
TAAACGAAGCGAGGCGCGGCGGAAAGTACCGAGAAGAATGGAGGAGCGGT
TCGTACCTCCCTCCTTGGTTTGGTCGCATGTTCCTGCGGACGTGCTCGAG
TGTTAAACCCTGTAAACAAACGTGCTACATGCGTTGCTTCTGCACACGTG
CACGGCGAGACTGGCAAGACTGCAGTAGACCGGCTTGACAACCCCATTCC
CGCTCCCGCTCCCGACCCCGACCCCGACCCTTGTTCTCATGTCACTCGTT
TCTACGGCGAAGTGCGCCGGTGCTTATCAGACCCCAGGTCTCACCTTCCC
CAGTCCATCCCGGCTGCCGTCGTGAAAAATCATGCCGGTGTTTTGTTGTA
CATATCTCCATTGCCCCCCTTCCTCTTCCATCACAAACCTAAATCAAATC
ATGCCAGGCGGCGGAGGAAACGATACGTACCGTCGTGGGGAGCGTCATCG
AATCCGCCTCGGGCAATGACCCGGGGGCCGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1451:7979..11060-

>mRNA_L-elsbetiae_contig1451.3311.1 ID=mRNA_L-elsbetiae_contig1451.3311.1|Name=mRNA_L-elsbetiae_contig1451.3311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig1451:7979..11060- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGGAGCAGGGGCGAGGCTCAATCTCCCCCAGGAGCATCGAGCTG
GGTGTCGTTCGTTGTGGTGCTGAACATCGTGGGGAGTTTGTTTATTTGGG
AGTTTTCCGCGGCATCTGGCATTACGCTCCCTGCCCTCTCCGCTGTGAGG
GGCGGCGTCACCGAGAGCAATGGCAACACCCGACCCAGCACGGTGTTGAT
CGACGCGGACGATGTGATCGACGAGATGGCCCTGGCCTCTCGCCAGCAAC
CCGGGACGGATTCCAGTGAGCAGGTTTTCAAGTCCACGCACGTCTACAGG
CCTTCACCTGCGATCCGACGCAAGCGGACGAGGAGATGCCTTGGAGCAGG
GGCGAGGCTCAATCTCCCCCAGGAGCATCGAGCTGGGTGTCGTTCGTTGT
GGTGCTGAACATCGTGGGGAGTTTGTTTATTTGGGAGTTTTCCGCGGCAT
CTGGCATTACGCTCCCTGCCCTCTCCGCTGTGAGGGGCGGCGTCACCGAG
AGCAATGGCAACACCCGACCCAGCACGGTGTTGATCGACGCGGACGATGT
GATCGACGAGATGGCCCTGGCCTCTCGCCAGCAACCCGGGACGGATTCCA
GTGAGCAGGTTTTCAAGTCCACGCACGTCTACAGGCCTTCACCTGCGATC
CGACGCAAGCGGACGAGGAGCAAGTCCCGCCTGGGGCAGGAGGGCGACAG
TCTTCTCAGGTCTCTCAAGACCGTGACAACCCGCACGACGAACGGCCTGG
CGCGGGCGGTGAACGTTACCGGGACGGCCGCGTCGGTGGTGGCGGGCGGG
GCATTTAAGCTCGCCGGGGCGGCGGTGCTTGACGCTGTCGCAAGTCCCGC
CTGGGGCAGGAGGGCGACAGTCTTCTCAGGTCTCTCAAGACCGTGACAAC
CCGCACGACGAACGGCCTGGCGCGGGCGGTGAACGTTACCGGGACGGCCG
CGTCGGTGGTGGCGGGCGGGGCATTTAAGCTCGCCGGGGCGGCGGTGCTT
GACGCTGTCGATGGGGTTGAATACGTCTCCGCCAAGTCCCCAAGAGAGGT
GCCTGGCATAACAGATGGGGTTGAATACGTCTCCGCCAAGTCCCCAAGAG
AGGTGCCTGGCATAACAGACACCTGGCGGCTGGTGGCGAAGGGGCTCAGG
AAGACGGGGGAGACGGTTTACGACTTTGGCGTGGCGGCGGAGAACGTTAC
TGCGGAGGCCACGGAGACACCTGGCGGCTGGTGGCGAAGGGGCTCAGGAA
GACGGGGGAGACGGTTTACGACTTTGGCGTGGCGGCGGAGAACGTTACTG
CGGAGGCCACGGAGGCGGCGGAGGAAACGATACGTACCGTCGTGGGGAGC
GTCATCGAATCCGCCTCGGGCAATGACCCGGGGGCCGCGGCGGCGGAGGA
AACGATACGTACCGTCGTGGGGAGCGTCATCGAATCCGCCTCGGGCAATG
ACCCGGGGGCCGCG
back to top