mRNA_L-elsbetiae_contig1450.3308.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1450.3308.1
Unique NamemRNA_L-elsbetiae_contig1450.3308.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1450.3308.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.940e-23
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = -1 
Query:   97 TVLSMELHVQVGANRRPDPRRDSVHAVCWRVKDAFTSAERETVETSAGVIVLPFSTATARRAVVPGTRPADGAG 318
            TVLS+ELHVQV A+RRPDPRRD VHAVCWRVKDAFTSAERETVET++GVIVLP +   AR   VP      G G
Sbjct: 1941 TVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAERETVETTSGVIVLPLA---ARGVAVPAAAAGSGGG 2011
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BLAST of mRNA_L-elsbetiae_contig1450.3308.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.280e-21
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = -1 
Query:  154 TVLSMELHVQVGANRRPDPRRDSVHAVCWRVKDAFTSAERETVETSAGVIVLPFS 318
            TVLS+ELHVQV A+RRPDPRRD VHAVCWRVKDAFTSAERE VET +GVIVLP +
Sbjct: 2046 TVLSLELHVQVPASRRPDPRRDCVHAVCWRVKDAFTSAEREAVETRSGVIVLPLA 2100
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1450.3308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE2.940e-2371.62DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI2.280e-2183.64DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1450contigL-elsbetiae_contig1450:23662..23981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0557578-CDS-L-elsbetiae_contig1450:23661..239791622815582.0557578-CDS-L-elsbetiae_contig1450:23661..23979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 23662..23979 +
1691682972.8447027-CDS-L-elsbetiae_contig1450:23661..239791691682972.8447027-CDS-L-elsbetiae_contig1450:23661..23979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 23662..23979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1450.3308.1prot_L-elsbetiae_contig1450.3308.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1450 23662..23979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1450.3308.1

>prot_L-elsbetiae_contig1450.3308.1 ID=prot_L-elsbetiae_contig1450.3308.1|Name=mRNA_L-elsbetiae_contig1450.3308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
LLVAAAATAATATAGVSALLPTAAATAAATAATGTIGRPGAGDHRPARRG
RREWEHDHPRARLHCFTLGGSESVLHPPADGVHRVPPGVRPPVGSDLHVE
LHGKHR
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mRNA from alignment at L-elsbetiae_contig1450:23662..23981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1450.3308.1 ID=mRNA_L-elsbetiae_contig1450.3308.1|Name=mRNA_L-elsbetiae_contig1450.3308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=320bp|location=Sequence derived from alignment at L-elsbetiae_contig1450:23662..23981+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTTGTTGCTGCTGCCGCCACCGCCGCCACCGCCACAGCGGGAGTCTC
CGCTCTTCTTCCCACTGCCGCCGCTACTGCCGCCGCTACTGCCGCGACCG
GCACCATCGGCAGGCCGGGTGCCGGGGACCACCGCCCGGCGCGCCGTGGC
CGTCGAGAATGGGAGCACGATCACCCCCGCGCTCGTCTCCACTGTTTCAC
GCTCGGCGGAAGTGAAAGCGTCCTTCACCCTCCAGCAGACGGCGTGCACC
GAGTCCCGCCGGGGGTCCGGCCGCCGGTTGGCTCCGACCTGCACGTGGAG
CTCCATGGAAAGCACCGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1450:23662..23981+

>mRNA_L-elsbetiae_contig1450.3308.1 ID=mRNA_L-elsbetiae_contig1450.3308.1|Name=mRNA_L-elsbetiae_contig1450.3308.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1450:23662..23981+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTTGTTGCTGCTGCCGCCACCGCCGCCACCGCCACAGCGGGAGTCTC
CGCTCTTCTTCCCACTGCCGCCGCTACTGCCGCCGCTACTGCCGCGACCG
GCACCATCGGCAGGCCGGGTGCCGGGGACCACCGCCCGGCGCGCCGTGGC
CGTCGAGAATGGGAGCACGATCACCCCCGCGCTCGTCTCCACTGTTTCAC
GCTCGGCGGAAGTGAAAGCGTCCTTCACCCTCCAGCAGACGGCGTGCACC
GAGTCCCGCCGGGGGTCCGGCCGCCGGTTGGCTCCGACCTGCACGTGGAG
CTCCATGGAAAGCACCGTCTCCTTGTTGCTGCTGCCGCCACCGCCGCCAC
CGCCACAGCGGGAGTCTCCGCTCTTCTTCCCACTGCCGCCGCTACTGCCG
CCGCTACTGCCGCGACCGGCACCATCGGCAGGCCGGGTGCCGGGGACCAC
CGCCCGGCGCGCCGTGGCCGTCGAGAATGGGAGCACGATCACCCCCGCGC
TCGTCTCCACTGTTTCACGCTCGGCGGAAGTGAAAGCGTCCTTCACCCTC
CAGCAGACGGCGTGCACCGAGTCCCGCCGGGGGTCCGGCCGCCGGTTGGC
TCCGACCTGCACGTGGAGCTCCATGGAAAGCACCGT
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