mRNA_L-elsbetiae_contig145.3302.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig145.3302.1
Unique NamemRNA_L-elsbetiae_contig145.3302.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig145.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig145contigL-elsbetiae_contig145:37212..37552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size343
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.219733-UTR-L-elsbetiae_contig145:37211..372191622815581.219733-UTR-L-elsbetiae_contig145:37211..37219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 37212..37219 +
1691682972.2443042-UTR-L-elsbetiae_contig145:37211..372191691682972.2443042-UTR-L-elsbetiae_contig145:37211..37219Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 37212..37219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.235977-CDS-L-elsbetiae_contig145:37219..375521622815581.235977-CDS-L-elsbetiae_contig145:37219..37552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 37220..37552 +
1691682972.2596385-CDS-L-elsbetiae_contig145:37219..375521691682972.2596385-CDS-L-elsbetiae_contig145:37219..37552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 37220..37552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig145.3302.1prot_L-elsbetiae_contig145.3302.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig145 37220..37552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig145.3302.1

>prot_L-elsbetiae_contig145.3302.1 ID=prot_L-elsbetiae_contig145.3302.1|Name=mRNA_L-elsbetiae_contig145.3302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MMHLPGAQLVPGTSARRDRGFDAYTHTHSRRPPVVSTTVLGSRRVPLFGH
GSCQTSLQPWTPALTTLAVLSFFASAAALFCRNLTPRPHAITNAFFAQAG
GNDALALLLTV
back to top

mRNA from alignment at L-elsbetiae_contig145:37212..37552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig145.3302.1 ID=mRNA_L-elsbetiae_contig145.3302.1|Name=mRNA_L-elsbetiae_contig145.3302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=341bp|location=Sequence derived from alignment at L-elsbetiae_contig145:37212..37552+ (Laminarionema elsbetiae ELsaHSoW15)
GTAAGCGTATGATGCACTTGCCAGGCGCGCAGCTGGTACCCGGTACAAGT
GCAAGGAGGGACAGAGGCTTTGACGCCTACACACATACTCACTCCCGTCG
TCCACCCGTAGTCTCCACAACCGTGCTTGGTAGTCGACGGGTTCCGTTGT
TTGGCCACGGGTCTTGTCAAACGAGCCTACAACCGTGGACACCTGCTTTG
ACAACGTTAGCCGTCCTGTCATTTTTCGCCTCCGCTGCAGCATTATTTTG
TCGTAATTTGACGCCCCGCCCCCACGCAATTACAAACGCTTTTTTCGCAC
AGGCTGGGGGTAACGATGCGTTGGCGCTGCTGCTGACTGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig145:37212..37552+

>mRNA_L-elsbetiae_contig145.3302.1 ID=mRNA_L-elsbetiae_contig145.3302.1|Name=mRNA_L-elsbetiae_contig145.3302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig145:37212..37552+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCACTTGCCAGGCGCGCAGCTGGTACCCGGTACAAGTGCAAGGAG
GGACAGAGGCTTTGACGCCTACACACATACTCACTCCCGTCGTCCACCCG
TAGTCTCCACAACCGTGCTTGGTAGTCGACGGGTTCCGTTGTTTGGCCAC
GGGTCTTGTCAAACGAGCCTACAACCGTGGACACCTGCTTTGACAACGTT
AGCCGTCCTGTCATTTTTCGCCTCCGCTGCAGCATTATTTTGTCGTAATT
TGACGCCCCGCCCCCACGCAATTACAAACGCTTTTTTCGCACAGGCTGGG
GGTAACGATGCGTTGGCGCTGCTGCTGACTGTAATGATGCACTTGCCAGG
CGCGCAGCTGGTACCCGGTACAAGTGCAAGGAGGGACAGAGGCTTTGACG
CCTACACACATACTCACTCCCGTCGTCCACCCGTAGTCTCCACAACCGTG
CTTGGTAGTCGACGGGTTCCGTTGTTTGGCCACGGGTCTTGTCAAACGAG
CCTACAACCGTGGACACCTGCTTTGACAACGTTAGCCGTCCTGTCATTTT
TCGCCTCCGCTGCAGCATTATTTTGTCGTAATTTGACGCCCCGCCCCCAC
GCAATTACAAACGCTTTTTTCGCACAGGCTGGGGGTAACGATGCGTTGGC
GCTGCTGCTGACTGTA
back to top