mRNA_L-elsbetiae_contig14497.3298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14497.3298.1
Unique NamemRNA_L-elsbetiae_contig14497.3298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14497.3298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14497contigL-elsbetiae_contig14497:2..1555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size198
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14497.3298.1prot_L-elsbetiae_contig14497.3298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14497 2..1515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.1423168-CDS-L-elsbetiae_contig14497:1..631622815581.1423168-CDS-L-elsbetiae_contig14497:1..63Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14497 2..63 +
1691682972.2042537-CDS-L-elsbetiae_contig14497:1..631691682972.2042537-CDS-L-elsbetiae_contig14497:1..63Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14497 2..63 +
1622815581.153436-CDS-L-elsbetiae_contig14497:1379..15151622815581.153436-CDS-L-elsbetiae_contig14497:1379..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14497 1380..1515 +
1691682972.2169354-CDS-L-elsbetiae_contig14497:1379..15151691682972.2169354-CDS-L-elsbetiae_contig14497:1379..1515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14497 1380..1515 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.1735098-UTR-L-elsbetiae_contig14497:1515..15551622815581.1735098-UTR-L-elsbetiae_contig14497:1515..1555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14497 1516..1555 +
1691682972.226941-UTR-L-elsbetiae_contig14497:1515..15551691682972.226941-UTR-L-elsbetiae_contig14497:1515..1555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14497 1516..1555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14497.3298.1

>prot_L-elsbetiae_contig14497.3298.1 ID=prot_L-elsbetiae_contig14497.3298.1|Name=mRNA_L-elsbetiae_contig14497.3298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
QTCGHVAVAIHYWCDGTNTYRGVRSLLVCGVAGVDDGEDCNAWWAFRLRT
YVGRKRRQNAVAWLN*
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mRNA from alignment at L-elsbetiae_contig14497:2..1555+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14497.3298.1 ID=mRNA_L-elsbetiae_contig14497.3298.1|Name=mRNA_L-elsbetiae_contig14497.3298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig14497:2..1555+ (Laminarionema elsbetiae ELsaHSoW15)
CAAACATGTGGGCACGTTGCCGTCGCAATACACTATTGGTGTGATGGTAC
AAACACGTACAGGTGTGCATCCCTACGAAGGCGACAGCTGCGTTGGGAAA
AAAAGCTGTTTCAACCAGCACCTTCGCCACAAAAACCGCGATACATTATT
ACTGATGTGTACAGGCGGTAAATAAATAGATGTGTACGTCACTCGCGAGG
AGCAACAACCGCCATCATACTCTATGAGTGTGCATGGAACAGGCAATTAC
GCGTGCTCATCACAGAGGTGACAGCTGTGGAAGGAAAGCCGTTTTTAACA
GGCACTTTCACCACGCTAGCCGTCATACACTTACTGATGTAGACTATGTG
CCTCATTTTTTTTCAATTATTTTCATGATGTTGGTGGTGGCGGTGGTGTT
TGGTGTGATTTGTTGTGTTGTTGTTGCTGCTGCTGTTGCTGCCGCTGCTG
CTGCTTCCTCGTGTAGTGGTGTCGTTGCTTCTGGTGTGTGTGCTGATACT
TACTTTTTTGTTCGTTTTAAATGTCGATTGCACGAGAGGCTTCCTTACAC
TACGTCGCTCGAAACACACATGGCATATTCATTTGCCGCATGACTACTAG
ATAGATTGTTTGATTTGTATTTTCACAAGCACTAAACCCGTGGCATGTAT
TCCCAAGTCAACGCCGGACGATGTACTGTAGCCTCTCATACGCAATTTTA
TCCGACAATGCGTCGAGAGGGTTGAAGAAAACATACGAAGTATTACTTGA
AAAATAAAACAGTCAGTCTATGTAGGTAGAGTTAGAGCATTTACCCTGGT
GGTCTCTTTAGTTCAATAGATTATTCTCAGAGAGTGAGCGTGTACAATAT
GTATATGATGATGACCCAGTATGTAGGATATGTATGTGTGTCTATCCTGA
GCACAGGTACTCTTCAGGACTTTTGTGACTTTCTTTCGCGGCTTCCACCA
AATGTTTTGCCAGGTGGGTCGTGCAGGAGGGCTAACTATAGAATCGCCTA
CATACGCGCGGAATTTCCTGAAAAAATAGTATTCAGATCTTGGTTTTGAT
GTTGGTTGATTTTTTATGTTGGCCTGCTAAATTTACTTAAAAAATACCAC
GGAAGGCGTCCGCGCGAGTCAGTGGGAACGAATGTTTGTAGGCACTGTTG
TTGCGCAGAGATCCAACAATCAAAAACCAGCCGCGACGGGCTTCCTTTTC
TTTCCCCAGGCCAGCACGCGTGCTATCGTGAGGGCGTGGGGGGTTACTTG
GCATCGGGACGAACGGCCATTTCAAGTAAATCTCCGAACTCCGAACCCCC
CGGCTAAACAAAATAAGATCCATTGTCGATCGATCGATCCCAACAGAGTG
TATTTTGTCCTCGACACGCCGTCAACAGGGGGGTCCGTTCTTTACTCGTG
TGCGGAGTGGCGGGAGTCGATGACGGCGAAGACTGCAATGCGTGGTGGGC
ATTTAGACTACGTACGTACGTAGGACGAAAAAGAAGGCAGAACGCTGTTG
CTTGGCTTAATTAAGAGGTGAAGGGAGGCAGGTTTTCAGCTAGTCATGAG
AGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14497:2..1555+

>mRNA_L-elsbetiae_contig14497.3298.1 ID=mRNA_L-elsbetiae_contig14497.3298.1|Name=mRNA_L-elsbetiae_contig14497.3298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig14497:2..1555+ (Laminarionema elsbetiae ELsaHSoW15)
CAAACATGTGGGCACGTTGCCGTCGCAATACACTATTGGTGTGATGGTAC
AAACACGTACAGCAAACATGTGGGCACGTTGCCGTCGCAATACACTATTG
GTGTGATGGTACAAACACGTACAGGGGGGTCCGTTCTTTACTCGTGTGCG
GAGTGGCGGGAGTCGATGACGGCGAAGACTGCAATGCGTGGTGGGCATTT
AGACTACGTACGTACGTAGGACGAAAAAGAAGGCAGAACGCTGTTGCTTG
GCTTAATTAAGGGGGTCCGTTCTTTACTCGTGTGCGGAGTGGCGGGAGTC
GATGACGGCGAAGACTGCAATGCGTGGTGGGCATTTAGACTACGTACGTA
CGTAGGACGAAAAAGAAGGCAGAACGCTGTTGCTTGGCTTAATTAA
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