mRNA_L-elsbetiae_contig1446.3287.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1446.3287.1
Unique NamemRNA_L-elsbetiae_contig1446.3287.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A6H5L840_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE)

HSP 1 Score: 335 bits (858), Expect = 6.430e-99
Identity = 220/512 (42.97%), Postives = 278/512 (54.30%), Query Frame = 2 
Query:  563 LFPQHSGLRSLRRGCVASLLEKLFEGKPGASNALPWIRRHH-----------EIGIGGPGLDDIGLVDWLYGMRNEKATGAYRASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSIPSAFCAGPSVGGSGIAGADTGVGGVGSGWWWYRSRGCNRERRSCSR*SGDVRNHREAVHRARYSRRGRFLATGVIVSSTTARNGTPHVFRSTLPSEFGRVHGG--CWRIQCAPILALHPQAVLVIDTTGHAYELPFAIESSSLLMAPAGGTNRGVASGGSCGDSSISSGGDAGTKRAPVEMGSSTVPPLLQLRVAPPFAKCSSVLISPAAEDTCFSWAKNGSQ------GNGNAEAYVAVASDSCLLSSARVGEAAELQKASSSGGNGVVHVSGRF 2041
            L     GLRSLRRG V+ +L+ LF+G+PGA NA+PWIR HH           ++   G   DD+ LVDWL G+R+  ATGAYRASLGE H+++VTPGGRAL+AGS RHG+LG S  MN FLFTE+DL   + PGR P AAVACG RHTLILTAVGTVHSCGLG+YGRLGHGSE SLSRPTL++SL GERITQ+AAG+AHSVAVSW+  A+TWGWG+  +LG G + D  +PTR +IP     G S GG    G    V G  +         C    RSC+                  +R G  L +G I + T+ R      F +   SEFGR+  G  CWR+QC  +       V  ID  G  YE+                   GVA GG+    S S  G+   +R P+                  +A CSSV++SP  ++    W + G +      G   +   V V+ D  LL  +   +A + + A      GVVH S R 
Sbjct:   32 LLAASRGLRSLRRGYVSGVLDLLFQGRPGAGNAIPWIRSHHGGKDKXXXXXNKLKGNGGSHDDVSLVDWLCGLRDMSATGAYRASLGETHSLLVTPGGRALSAGSGRHGVLGASGRMNRFLFTEVDLGWGRFPGRIPVAAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGSEASLSRPTLIESLAGERITQVAAGEAHSVAVSWSGKAYTWGWGYLGILGRGSDADVLKPTRVAIPLINAVGGSDGGDARGGGVAAVEGHVT---------CATAGRSCT---------------VLGTRHGAVLFSGFITTMTSNR------FCAVF-SEFGRLGDGLRCWRVQCECLPVTDTTVVTAIDPAGQVYEVQ---------------PRNGVALGGN----SSSRYGNPSEQRVPLSAN---------------YAPCSSVILSPFDDERGQCWLETGGEVEEPGWGMNLSFGMVGVSRDGRLLFDSDEDDAGKERSA------GVVHASARI 472
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: D8LDL9_ECTSI (Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 2.910e-96
Identity = 209/464 (45.04%), Postives = 262/464 (56.47%), Query Frame = 2 
Query:  563 LFPQHSGLRSLRRGCVASLLEKLFEGKPGASNALPWIRRHH-------------EIGIGGPGLDDIGLVDWLYGMRNEKATGAYRASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSIPSAFCAGPSVGGSGIAGADTGVGGVGSGWWWYRSRG---CNRERRSCSR*SGDVRNHREAVHRARYSRRGRFLATGVIVSSTTARNGTPHVFRSTLPSEFGRVHGG--CWRIQCAPILALHPQAVLVIDTTGHAYELPFAIESSSLLMAPAGGTNRGVASGGSCGDSSISSGGDAGTKRAPVEMGSSTVPPLLQLRVAPPFAKCSSVLISPAAEDTCFSWAKNGSQ 1900
            L     GLRSLRRG V+ +L+ LF+GKPGA NA+PWIR HH             ++   G  +DD+ +VDWL G+R+  ATGAY ASLGE H+++VTPGGRAL+AGS RHG+LG+S  MN FLFTE+DL   + PGR P  AVACG RHTLILTAVGTVHSCGLG+YGRLGHG+E SLSRPTL+DSL GERITQ+AAG AHSVAVSW+  AFTWGWG+Q VLG G + D  +PTR +IP    +G S GG    G     GGV          G   C    RSC+                  +R G  L +G++  ST   N    VF     SEFGR+  G  CWR+QC  + A     V+ ID  G  Y++                   GVA GG+    + S  G+   +R P+                  +A CSSV++SP+  +    W + G +
Sbjct:   30 LLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAIPWIRSHHGGKDXXXXXXXXNKLKGNGGSVDDVSVVDWLCGLRDTSATGAYSASLGETHSLLVTPGGRALSAGSGRHGVLGSSGRMNRFLFTEVDLGWGRFPGRIPVVAVACGQRHTLILTAVGTVHSCGLGDYGRLGHGNEASLSRPTLIDSLAGERITQVAAGAAHSVAVSWSGKAFTWGWGYQGVLGRGGDDDVLKPTRVAIPLMDVSGGSNGGGDARG-----GGV------VAVEGHVTCATAGRSCT---------------VLGTRHGVVLFSGLM--STMTSNHFCAVF-----SEFGRLGDGLRCWRVQCECLPATGTTLVMAIDPAGQVYDVE---------------PRNGVALGGN----NSSRYGNPSKQRVPLSAD---------------YAPCSSVILSPSDNERGQCWLETGGE 426
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: L1IJ01_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IJ01_GUITC)

HSP 1 Score: 95.1 bits (235), Expect = 1.060e-17
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2 
Query:  791 EDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEP 1222
            E H+  VT  G+    GS + G LG   + N  L   I   +      +P   VACGS HT++++  G V + G G +G+LG GS H+ + P  V SL G ++ ++A G AH+  V+ +   +TWGWG    LGHGD+  +  P
Sbjct:   44 EQHSAAVTEQGQVYTWGSGKSGQLGHGDSQNLVLPRLIVGLQS-----NPIVEVACGSAHTVVVSKAGLVFAWGWGHFGQLGVGSTHNSNDPVQVTSLDGVKVCKVACGSAHTAVVTESGHVYTWGWGVNGQLGHGDDASQSRP 182
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: UPI001FB17749 (protein RCC2 homolog n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB17749)

HSP 1 Score: 97.8 bits (242), Expect = 2.720e-17
Identity = 67/194 (34.54%), Postives = 99/194 (51.03%), Query Frame = 2 
Query:  779 ASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAV--GTVHSCGLGEYGRLGHGSEHSLS--------------RPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSI--------PSAFCAGPSVGGSGIAG 1288
            A+ G  HT+VVT  G  LA G  +HG LG+ S  N     EI+ +  + P  +  + +ACG+  T+ LT+    ++ +CGL +YG+LGHG+++  +              RP  + S  GE I ++A G  H+VAV  N   +TWG+G    LGH ++ D W P R  I        P+A  +  SV  S  AG
Sbjct:  115 AAAGRSHTLVVTNEGLTLAFGWNKHGQLGSGSAKN-----EIESSPVRCPVSEVKS-IACGADFTVWLTSTEGSSIMTCGLPQYGQLGHGTDNEYNTKDSSVRLAYEAQPRPKAIASFSGETIVKVACGNNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRIDIFTKQNVLPPNAVVSAGSVNSSCTAG 302
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A0M0K9T2_9EUKA (Rcc1 repeat-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K9T2_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 2.420e-16
Identity = 62/179 (34.64%), Postives = 90/179 (50.28%), Query Frame = 2 
Query:  776 RASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRG-AFTWGWGFQHVLGHGDELDRWEPTRF--------------SIPSAFCAGPSV 1267
            R + G DH+  ++ GG  L  G+  +G LG   N N +    ++     L G+    +VACGS+HT+ LTA G+V++ G G  GRLG G    + RP LV+ L  +    IAAG++HS+A++  +   +TWG G    LGHGD   +  P                 +  SA CA P V
Sbjct:  140 RVACGSDHSAAISEGGEVLTWGAGSYGNLGHGDNANVYSPKIVEA----LLGK-ACISVACGSKHTIALTAAGSVYTWGYGGGGRLGSGDTRGMFRPKLVNDLKDQACLMIAAGESHSMAITAEKAQCYTWGVGDYGKLGHGDTTPQLLPRHLEYFRNAQLIWCAGGTFHSAACAQPDV 313
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A453D4E7_AEGTS (Uncharacterized protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453D4E7_AEGTS)

HSP 1 Score: 91.7 bits (226), Expect = 2.950e-16
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 2 
Query:  776 RASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAV--GTVHSCGLGEYGRLGHGSEHSLS--------------RPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSI 1237
            +AS+G++HTVVVT  G++ A G  + G LGT S  N    + +     ++ G      VACG   T+ L++V   T+ S GL +YG+LGHG+++  +              RP  + +L  + I ++A G  H+VAV  +   +TWG+G    LGH ++ D W+P    I
Sbjct:  116 KASVGKNHTVVVTDDGKSFAFGHNKFGQLGTGSLKNEIEASPVPCLVTEVTG------VACGGDFTVWLSSVEGSTILSAGLPQYGQLGHGTDNEYNTKDSSVKLSYDPQPRPRAIAALSEKTIVKVACGTNHTVAVDSSGFVYTWGYGGYGRLGHREQKDEWQPRLVEI 279
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A7S4NS28_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NS28_GUITH)

HSP 1 Score: 89.4 bits (220), Expect = 3.680e-16
Identity = 57/149 (38.26%), Postives = 75/149 (50.34%), Query Frame = 2 
Query:  797 HTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSIPS 1243
            HTV VT  G     G  + G LG + N    + T   L    +    P AA   G  HTL+L   G V S G G+ GRLGHG+++    PT + +L  ER   IAAG AHSVA++     +TWG G    LGHG + D   P + ++ S
Sbjct:   17 HTVAVTHHGALFTWGDGKEGKLGHNDNAQRLIPT---LVAAFIEWGMPVAAAQAGGSHTLVLNRRGQVFSFGSGDSGRLGHGNDNDQWSPTFLSALESERCVSIAAGFAHSVALTDQGQIYTWGCGKLGRLGHGSDSDEVLPRKLALIS 162
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A453D4E1_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453D4E1_AEGTS)

HSP 1 Score: 91.7 bits (226), Expect = 4.830e-16
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 2 
Query:  776 RASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAV--GTVHSCGLGEYGRLGHGSEHSLS--------------RPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSI 1237
            +AS+G++HTVVVT  G++ A G  + G LGT S  N    + +     ++ G      VACG   T+ L++V   T+ S GL +YG+LGHG+++  +              RP  + +L  + I ++A G  H+VAV  +   +TWG+G    LGH ++ D W+P    I
Sbjct:    6 KASVGKNHTVVVTDDGKSFAFGHNKFGQLGTGSLKNEIEASPVPCLVTEVTG------VACGGDFTVWLSSVEGSTILSAGLPQYGQLGHGTDNEYNTKDSSVKLSYDPQPRPRAIAALSEKTIVKVACGTNHTVAVDSSGFVYTWGYGGYGRLGHREQKDEWQPRLVEI 169
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A7S4LZF4_GUITH (Hypothetical protein (Fragment) n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4LZF4_GUITH)

HSP 1 Score: 95.1 bits (235), Expect = 5.750e-16
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 2 
Query:  791 EDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGSEHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEP 1222
            E H+  VT  G+    GS + G LG   + N  L   I   +      +P   VACGS HT++++  G V + G G +G+LG GS H+ + P  V SL G ++ ++A G AH+  V+ +   +TWGWG    LGHGD+  +  P
Sbjct:  412 EQHSAAVTEQGQVYTWGSGKSGQLGHGDSQNLVLPRLIVGLQS-----NPIVEVACGSAHTVVVSKAGLVFAWGWGHFGQLGVGSTHNSNDPVQVTSLDGVKVCKVACGSAHTAVVTESGHVYTWGWGVNGQLGHGDDASQSRP 550
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BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Match: A0A8J5VE63_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5VE63_ZIZPA)

HSP 1 Score: 93.2 bits (230), Expect = 8.130e-16
Identity = 57/161 (35.40%), Postives = 91/161 (56.52%), Query Frame = 2 
Query:  776 RASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLFTEIDLTRQQLPGRDPDAAVACGSRHTLILTAV--GTVHSCGLGEYGRLGHGSEHSLS-----RPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGHGDELDRWEPTRFSI 1237
            +AS+G +HTVVVT  G++ + G  +HG LGT S  N     EI+ +       +   AV CG+  T+ L++V   ++ + GL +YG+LGHG+++ L+     RP  + S  G+ I + A G  H+VAV  +   +TWG+G    LGH ++ D W+P    +
Sbjct:  126 KASVGRNHTVVVTDDGKSFSFGHNKHGQLGTGSLRN-----EIESSPVPCLVNEASNAV-CGADFTVWLSSVEGSSILTAGLPQYGQLGHGTDNELAYDPQPRPRAIASFSGKTIVKAACGTNHTVAVDSSGFVYTWGFGGYGRLGHREQKDEWQPRLVEV 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1446.3287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L840_9PHAE6.430e-9942.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDL9_ECTSI2.910e-9645.04Hect E3 ubiquitin ligase n=1 Tax=Ectocarpus silicu... [more]
L1IJ01_GUITC1.060e-1736.11Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
UPI001FB177492.720e-1734.54protein RCC2 homolog n=1 Tax=Impatiens glandulifer... [more]
A0A0M0K9T2_9EUKA2.420e-1634.64Rcc1 repeat-containing protein n=1 Tax=Chrysochrom... [more]
A0A453D4E7_AEGTS2.950e-1633.53Uncharacterized protein n=2 Tax=Triticinae TaxID=1... [more]
A0A7S4NS28_GUITH3.680e-1638.26Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
A0A453D4E1_AEGTS4.830e-1633.53Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A7S4LZF4_GUITH5.750e-1636.11Hypothetical protein (Fragment) n=2 Tax=Guillardia... [more]
A0A8J5VE63_ZIZPA8.130e-1635.40Uncharacterized protein n=1 Tax=Zizania palustris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1446contigL-elsbetiae_contig1446:15753..21356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.7
Seed ortholog evalue1.9e-62
Seed eggNOG ortholog2880.D8LDL9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size3242
Cds size633
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.8394523-UTR-L-elsbetiae_contig1446:15752..164971622815579.8394523-UTR-L-elsbetiae_contig1446:15752..16497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 15753..16497 +
1691682971.3644514-UTR-L-elsbetiae_contig1446:15752..164971691682971.3644514-UTR-L-elsbetiae_contig1446:15752..16497Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 15753..16497 +
1622815579.90875-UTR-L-elsbetiae_contig1446:18898..196431622815579.90875-UTR-L-elsbetiae_contig1446:18898..19643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 18899..19643 +
1691682971.4238892-UTR-L-elsbetiae_contig1446:18898..196431691682971.4238892-UTR-L-elsbetiae_contig1446:18898..19643Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 18899..19643 +
1622815579.924005-UTR-L-elsbetiae_contig1446:20237..213561622815579.924005-UTR-L-elsbetiae_contig1446:20237..21356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 20238..21356 +
1691682971.4404519-UTR-L-elsbetiae_contig1446:20237..213561691682971.4404519-UTR-L-elsbetiae_contig1446:20237..21356Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1446 20238..21356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.8597112-CDS-L-elsbetiae_contig1446:16497..165581622815579.8597112-CDS-L-elsbetiae_contig1446:16497..16558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 16498..16558 +
1691682971.3774843-CDS-L-elsbetiae_contig1446:16497..165581691682971.3774843-CDS-L-elsbetiae_contig1446:16497..16558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 16498..16558 +
1622815579.8739312-CDS-L-elsbetiae_contig1446:17171..172631622815579.8739312-CDS-L-elsbetiae_contig1446:17171..17263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 17172..17263 +
1691682971.387654-CDS-L-elsbetiae_contig1446:17171..172631691682971.387654-CDS-L-elsbetiae_contig1446:17171..17263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 17172..17263 +
1622815579.8850837-CDS-L-elsbetiae_contig1446:17765..178781622815579.8850837-CDS-L-elsbetiae_contig1446:17765..17878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 17766..17878 +
1691682971.4019847-CDS-L-elsbetiae_contig1446:17765..178781691682971.4019847-CDS-L-elsbetiae_contig1446:17765..17878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 17766..17878 +
1622815579.8952787-CDS-L-elsbetiae_contig1446:18531..188981622815579.8952787-CDS-L-elsbetiae_contig1446:18531..18898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 18532..18898 +
1691682971.4112182-CDS-L-elsbetiae_contig1446:18531..188981691682971.4112182-CDS-L-elsbetiae_contig1446:18531..18898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 18532..18898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1446.3287.1prot_L-elsbetiae_contig1446.3287.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1446 16498..18898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1446.3287.1

>prot_L-elsbetiae_contig1446.3287.1 ID=prot_L-elsbetiae_contig1446.3287.1|Name=mRNA_L-elsbetiae_contig1446.3287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MRNEKATGAYRASLGEDHTVVVTPGGRALAAGSRRHGILGTSSNMNCFLF
TEIDLTRQQLPGRDPDAAVACGSRHTLILTAVGTVHSCGLGEYGRLGHGS
EHSLSRPTLVDSLLGERITQIAAGQAHSVAVSWNRGAFTWGWGFQHVLGH
GDELDRWEPTRFSIPSAFCAGPSVGGSGIAGADTGVGGVGSGWWWYRSRG
CNRERRSCSR*
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mRNA from alignment at L-elsbetiae_contig1446:15753..21356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1446.3287.1 ID=mRNA_L-elsbetiae_contig1446.3287.1|Name=mRNA_L-elsbetiae_contig1446.3287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5604bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:15753..21356+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAAGAACCACCCAGATATAGAGTGGTGCTGCCCCCTAACAGGATACCT
GGTCCCTCGCAGACACAACAGCAGCTTGAAGTCAAGGCGTATATGCGTAT
ACTTCGTATGTGTAGAAGGTTCCAAACACGCGAGCATAGAGGACTACACG
AGCGCGAACTCTTGACCGGTCACTGTGCTATGCAGACCTCCCATCCTATC
ATACCTGCTCACACATTTTGCGAAGCGTACCTCCCAGGTGGAGAAGTGGT
TCTTTATTCCGCAAAACCTGTTTTGTCATCACCGTTCTGTGGTACGGCAG
TAACATCAGACCTGGAGGCGACCAAAACGATTCAAAAATCTTTCAACCAC
ACACAAGCGACGTCGGCATGCAGTTCGCCCGGTCGTTCACGCGACTGGCC
GGACACAGCAGAACAGATCACCGCACATAGAAGCGCTTGGGTGCTTGATT
TGACGCGATGTGCGCTGGCTGGCCTCGTCGGCGTCACCAGAGAACACTAC
TGGGATAAGGCCGTACTTGCTCCATCCTGAATTTGCAGCACTGGGTTACT
CATCCCCGCCCTCTCTTCCCACAACACAGCGGTCTTCGCTCTCTCCGGCG
AGGATGCGTGGCCAGCCTCCTCGAGAAGCTGTTCGAGGGAAAGCCGGGAG
CCTCCAACGCCCTTCCCTGGATTCGGCGGCACCACGAAATTGGGATTGGT
GGTCCTGGCCTCGACGATATCGGCCTCGTGGACTGGCTGTACGGCATGAG
GAACGAAAAAGCCACCGGGGCGTACCGCGCGTCTCTTGGAGAGGATCACA
CCGTCGGTAAGGAGAGACCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCC
TACCTGCAGTGTGTTTCTTTATTTCATGAACCCTATCACAGCAGGGACGG
AGAAGGGTCCATATTGTTGATTTGTAGCTGACCAGAGGGTGTGTGTGTGT
ATTGCTCAGCCCGGCCCTCCTCGACAATTCTTGTGGCACGGTGTGATACG
CGTAGTGTGCGGCACACATGCTCTCTGCCGCAACCGGGCCCCCACCTGGC
GCACAGGGCCAACGCCGGCACCTTAGAGCAAACTCCACCCCCGAGTCTTG
GCCTATGTACACCCAACTGCTGTGGTTGATCGCTTATTTCTTATTTCGGC
GAAAATTGCTGGCGCTTGCGCGCGAGCCGGGGTGGTGCAGCTTCTCCCAA
CCAAGCAGCAGTCGGGCGGCTTGTTTCACGCCCACACCCGCTGTCCTTGG
CTGTCTCGGATGACGTCTCGAGAAAACGAAGCAGCGATGCTGATACTTTG
TTTGCTTGCCTTGGCTACCGTGCGTCGTCCGTTGTCGCCGTGGTGGTGCT
GGTGCTGACCCCCACCCCACCCTCAGCTGCTCCTCGGTCCTTGCCGCATT
GTCTCGCGCGTTCTTGCAGTCGTGACGCCGGGAGGGAGGGCTCTCGCTGC
CGGCAGCAGGAGGCACGGCATTTTGGGAACCAGCAGCAACATGAACTGCT
TCCTCTTTACGGTAAGAAAGGGGGGGGGAGGGAGAGGGGTGGAGGGGCCT
CGAGACGTGCAGTTGCTTTAGTTGAGACGGCGCGTAGGTTGGCGGCACGG
TTGCTGTGAATGGACTCTACAACCTCACCGTGTGCTGCAGTACCTCCCCC
GCTGCATCGCTTCCTTTTTTGATGTTTGGTGTTGCAGTACACGGCCCGTC
TCAAAACAACGTTTGGGGATAAGTTGGGAGAAGAAGATGAGCATTTAAGA
GAAAGGCAGAGATCGAAGAGAAGGAGAGAGGGGGAGACAGAGACAGAGAC
GGAAGGGGGATGGGGTGAAGCGAAGGGTGTTCATCCGCAGATGTTCTTTC
TGAATTGTTCTCATGGCGACCCCCCGCACGCCCGCATGGTGTGTGTGCGG
CTTTGCGTGTGATGTTTGGAGACGCCTTTCTTCGCCAGCGGTGGATGACC
CTTTGCGTTCCGCTCCTGAAGGCATACGCTTCTGGTGTTTGATTCCGCTT
GTGACGCTCGCAGGAGATCGATCTTACACGGCAGCAGCTCCCCGGGCGGG
ATCCGGATGCGGCGGTGGCGTGCGGCAGCCGGCACACCCTCATCCTCACG
GCGGTGGGCACGGTTCATTCATGCGGGTGAGAAATGAGAAACCAAGCTCC
GGAACAGCATAGTACATAAAAATGGACGTTTCTACTGCCGGCATCCTCGT
TCGATACAGCCATTAGATGTGCCGTGGGACATGGCGGTTGGAGATGGGTG
ATCGCTGGCTGGCTAGTGAACTGCTCTCGCCTTGAAAGCACGTGATATCA
ACCGTGTGATCCCGAGGGCACAGGCGTCGGGGAGTCGGGAAACAGACGAC
CTAATGTATGACGGGACTACCATAGCTTGGATTTCGAAAGCGTGGACGTT
TGTCGAGCACGACATGGACTGAAATCGCCAAAAACACATCTATGGTAGTC
TAGATGGAAATGTCGAGAAATTTCCTCGAAATTCGTTCGGCCTTTCCCGA
AAAGGGTTGTAGTTTGTGCGGGTACATATGTATGCGGTAACGGGGAGATC
CAGCAACCGTTGCCGCGGCCTTTGTCGCCCAACTCGAAAAGGCCACTCAG
ATGCGGCCCCGGCCCGCGCAGACGCAAGAAACAGGAGACAAAGTGTGCCC
TCAATACACCCCCTCTCCCGGCTTTGTTTAGGGTTTTACGTTCCGGGAGA
ATGGGAGCGTGGAACTGAATTCCGTACACCACAACGACTGCGGCATGCAT
GGTCAATAAAACACCCCCCTTGCCAACAGGCTCGGCGAGTACGGCCGGCT
GGGGCACGGCAGCGAGCACAGCCTCTCCCGCCCTACCCTGGTGGACTCTC
TCCTCGGCGAGCGGATAACCCAGATCGCGGCGGGGCAGGCTCACTCCGTG
GCGGTCTCCTGGAATAGGGGGGCGTTCACGTGGGGCTGGGGGTTCCAGCA
CGTTCTCGGCCACGGGGACGAGCTCGACCGATGGGAGCCGACCAGGTTCT
CGATCCCGTCGGCCTTCTGCGCCGGGCCAAGCGTGGGCGGGTCGGGGATT
GCGGGAGCAGACACGGGTGTAGGCGGTGTTGGCAGTGGGTGGTGGTGGTA
CCGCAGCCGTGGGTGCAACCGGGAGCGGCGAAGTTGTAGTCGGTGATCGG
GTGACGTGCGCAACCACCGGGAGGCGGTGCACCGTGCTCGGTACTCGCGC
CGTGGCAGGTTTCTGGCGACGGGCGTGATCGTGAGCTCAACCACCGCTAG
AAACGGCACACCCCACGTTTTTCGCAGCACTTTGCCCTCCGAGTTCGGAA
GGGTGCACGGCGGGTGCTGGCGTATTCAATGCGCCCCCATCCTTGCCCTG
CATCCGCAGGCAGTGCTGGTCATCGACACCACCGGACACGCTTACGAGCT
ACCATTCGCGATCGAAAGCAGTTCTCTGTTGATGGCACCCGCGGGCGGAA
CAAACAGAGGGGTCGCGAGCGGCGGTAGTTGCGGCGATAGTAGCATCAGC
AGCGGGGGCGACGCCGGGACCAAGCGCGCGCCCGTTGAAATGGGCTCCTC
GACGGTGCCCCCCCTGCTACAGCTGAGAGTAGCACCGCCGTTCGCCAAGT
GCTCTTCCGTACTCATTTCGCCGGCAGCAGAGGACACTTGCTTTTCCTGG
GCTAAGAACGGTAGCCAGGGGAATGGCAACGCCGAGGCGTACGTGGCCGT
GGCGTCTGACAGCTGTCTGCTCTCTTCCGCCAGAGTAGGTGAGGCCGCCG
AGCTGCAGAAGGCCAGCAGCAGCGGCGGCAACGGGGTGGTCCATGTGTCG
GGCCGATTTCTGCGGCGACAGCAGGCACGGGCTCCTGCTCGTGGACCGGG
GGGCATCGGTGGTAAACCACGGGAACGGCAGAACCGGCCATGTGGGTTCA
GAGGGATGGGGCAAATACTAGCACTTGCTGCTGTGGTGGGTAGGTGCACT
GCTGTTTGTTGCTCTTATACATTCATACATGATTTCTTCGTCTGCATGGA
GCGCGTTAAACGGGGTGTCCGCGGGATATGTAGTAATCCAGCGGCCGCCG
GCTTTGGCTGTCCGAGAAGTTTTCCTTGACCTCGGTCTTGGCTCAACTTG
TGTTTCTGTGTGGTGTTTGCGTGTGTCTGTTTCGAGGCTCTGTTTGAGCG
TTCTGCGGCAGTGTATTTTGTGTTATTTGTCTCCCAACGCAACACGCATT
CGAGTCATCTCTGGCCCTCTCGATTCATACGCGAAGAAGACCTGCCCCCC
CCCCCCGTGAGCATCCACCCTGGCATCCTGACCTCTGTGTGATGCACCAG
GAAAGCTAGTCCTGACCCACGGCTGGTGCACGGGTGTTGTTGATGTGCAC
TGCCGCTGTCTATAGGTACACTCCGTATCTCTTTTTTCTTGCTCGGGGGC
ACCTGCTAGACGCACCCCCTGCCTTTTTCTGTCTCTCCGTTCATCTTCTC
ACCCCTACCCTGCCTATGACCCCCCCCCCCAACAGCTCGGCCACGGAACC
CCCGGCTACGGTCTGCACCCCGAAGATGGTGACGACAGCGGCCGTCCTGT
GAAGCGCCATTCGAGGAGGGCAAAGCGGGGCTCGGTTTGCAAGCACGCAG
GTCTCCACTGCTGGTGCTACCATTGCTGCTGTTGCTGCTTCGGAACCCGA
AGTCGGAGGGGACGTAGCACAAAGGGGTAAGGGTAGGGGTAGGGAGAGTC
TCCTTGCGCTTGTTGACGTGACCTTGGAAGATGACCAGGCGTTAGCCGAA
GACGGAAAAGTGCCCGAGTATGTAAAAGCGGCGTGAAATGGGTGTCGTAG
TTCTTCGTGTTCATGGAGTCGCTCGTGTCTGTCTTCTACATGCATGCACG
CGTGGAGAAAACACGCAAGAAGGTATGCCGGGCGGTGGTGCAGCTGTTGC
AAAGGTGTAGGTGTTAGTCCCGGCATATGCTGTTGCCAGCGGACTGGATG
GAATGGTATGTTTACTGCACCCGCCTCTCAGTTGGATGACCAGCCTGTTG
TCCTCTATGGCATGTGTCCTCTTTGGCATGCCGCTGGAAGTCGTTTCCAA
CGGATGAATGGTGGCAATGTTTTTCACCGTGTTTGTTCGAATGAAGCCGG
TGTACGTATGACAGCGGTGTATTGGTGGCTAGGCTGGTGTTTACGATAAA
AGTCGTGTGCTTGTTTTAACAGTCTGGTTGCCAAATTTAGCCGTAGCATT
GATCATCCGCTTATCGCCTGCGGCAAAAAAGGATGTATGCCGCTCTACGG
CAAACGTACGGGATGGTCGAAGTTACACTGCTGTCGTTTTGGGACGCATG
CAGTTTTGTAGCAGGTGTTGTTTTTCAACCTCCGGCTTTGACTCTTCCAA
CGTGTTGACAACAAGGATAGCAGTATGCTGGCAGAGAGGGAACGAGACGG
GGGATCGTTGTGGAGGAGCGCCGATGGATTCGTGGTCACATGGTGTTCGC
CATGTACATGCCCTAGTTTGAAAGGAGCGAGATCGGGATACGGCTCATTT
GACGAATGATGCCGCTCTTCTTTTTTTTCAGCCGCCAAGGGCGACGCATA
GATATTCCCAAGTGCGACAACAAAGATGTTAAACGTGCGGGAGTATCCGT
AAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1446:15753..21356+

>mRNA_L-elsbetiae_contig1446.3287.1 ID=mRNA_L-elsbetiae_contig1446.3287.1|Name=mRNA_L-elsbetiae_contig1446.3287.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:15753..21356+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGAACGAAAAAGCCACCGGGGCGTACCGCGCGTCTCTTGGAGAGGA
TCACACCGTCGATGAGGAACGAAAAAGCCACCGGGGCGTACCGCGCGTCT
CTTGGAGAGGATCACACCGTCGTCGTGACGCCGGGAGGGAGGGCTCTCGC
TGCCGGCAGCAGGAGGCACGGCATTTTGGGAACCAGCAGCAACATGAACT
GCTTCCTCTTTACGTCGTGACGCCGGGAGGGAGGGCTCTCGCTGCCGGCA
GCAGGAGGCACGGCATTTTGGGAACCAGCAGCAACATGAACTGCTTCCTC
TTTACGGAGATCGATCTTACACGGCAGCAGCTCCCCGGGCGGGATCCGGA
TGCGGCGGTGGCGTGCGGCAGCCGGCACACCCTCATCCTCACGGCGGTGG
GCACGGTTCATTCATGCGGGAGATCGATCTTACACGGCAGCAGCTCCCCG
GGCGGGATCCGGATGCGGCGGTGGCGTGCGGCAGCCGGCACACCCTCATC
CTCACGGCGGTGGGCACGGTTCATTCATGCGGGCTCGGCGAGTACGGCCG
GCTGGGGCACGGCAGCGAGCACAGCCTCTCCCGCCCTACCCTGGTGGACT
CTCTCCTCGGCGAGCGGATAACCCAGATCGCGGCGGGGCAGGCTCACTCC
GTGGCGGTCTCCTGGAATAGGGGGGCGTTCACGTGGGGCTGGGGGTTCCA
GCACGTTCTCGGCCACGGGGACGAGCTCGACCGATGGGAGCCGACCAGGT
TCTCGATCCCGTCGGCCTTCTGCGCCGGGCCAAGCGTGGGCGGGTCGGGG
ATTGCGGGAGCAGACACGGGTGTAGGCGGTGTTGGCAGTGGGTGGTGGTG
GTACCGCAGCCGTGGGTGCAACCGGGAGCGGCGAAGTTGTAGTCGGTGAG
CTCGGCGAGTACGGCCGGCTGGGGCACGGCAGCGAGCACAGCCTCTCCCG
CCCTACCCTGGTGGACTCTCTCCTCGGCGAGCGGATAACCCAGATCGCGG
CGGGGCAGGCTCACTCCGTGGCGGTCTCCTGGAATAGGGGGGCGTTCACG
TGGGGCTGGGGGTTCCAGCACGTTCTCGGCCACGGGGACGAGCTCGACCG
ATGGGAGCCGACCAGGTTCTCGATCCCGTCGGCCTTCTGCGCCGGGCCAA
GCGTGGGCGGGTCGGGGATTGCGGGAGCAGACACGGGTGTAGGCGGTGTT
GGCAGTGGGTGGTGGTGGTACCGCAGCCGTGGGTGCAACCGGGAGCGGCG
AAGTTGTAGTCGGTGA
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