mRNA_L-elsbetiae_contig1446.3286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1446.3286.1
Unique NamemRNA_L-elsbetiae_contig1446.3286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1446.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1446contigL-elsbetiae_contig1446:1240..1679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.7869613-CDS-L-elsbetiae_contig1446:1240..14211622815579.7869613-CDS-L-elsbetiae_contig1446:1240..1421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 1241..1421 -
1691682971.343845-CDS-L-elsbetiae_contig1446:1240..14211691682971.343845-CDS-L-elsbetiae_contig1446:1240..1421Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 1241..1421 -
1622815579.8008714-CDS-L-elsbetiae_contig1446:1623..16791622815579.8008714-CDS-L-elsbetiae_contig1446:1623..1679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 1624..1679 -
1691682971.3543127-CDS-L-elsbetiae_contig1446:1623..16791691682971.3543127-CDS-L-elsbetiae_contig1446:1623..1679Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 1624..1679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1446.3286.1prot_L-elsbetiae_contig1446.3286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1446 1241..1679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1446.3286.1

>prot_L-elsbetiae_contig1446.3286.1 ID=prot_L-elsbetiae_contig1446.3286.1|Name=mRNA_L-elsbetiae_contig1446.3286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
GVSEPRVLVSDAGPLATHREYRDRARWALRDPAVVAAPVVLSKARRRRRT
RRRTNKPPRCFRQRQPSRRRGHHYLHQRR
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mRNA from alignment at L-elsbetiae_contig1446:1240..1679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1446.3286.1 ID=mRNA_L-elsbetiae_contig1446.3286.1|Name=mRNA_L-elsbetiae_contig1446.3286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=440bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:1240..1679- (Laminarionema elsbetiae ELsaHSoW15)
GGAGTTTCTGAACCGAGAGTGCTCGTCTCCGACGCGGGTCCACTTGCGAC
GCACAGGTGAACTGCTACGCATGTACATTGCGCTGACTTCAAACCTGTAT
AGAGGTTGGCTCGGCGGAGGGTGTCTGTTAAAACGGAGAAGAGAGCAAAA
AAGAGCGTTGTCGTTTTCGGGTACAAAGCATCTATGTACCTTTGTTCTGT
GACATCAACCCCTCCACGTGAACAACAACCACAACAACAACAAAAACAAA
AATAACAGGGAGTATCGAGATCGAGCGCGGTGGGCACTTCGAGACCCCGC
CGTCGTCGCCGCTCCTGTCGTCCTCTCGAAGGCGAGAAGGAGGAGGAGGA
CGAGGAGGAGGACGAACAAACCACCGCGATGCTTCCGGCAGCGGCAGCCT
AGCCGCCGCCGCGGCCACCACTACCTTCACCAGCGACGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1446:1240..1679-

>mRNA_L-elsbetiae_contig1446.3286.1 ID=mRNA_L-elsbetiae_contig1446.3286.1|Name=mRNA_L-elsbetiae_contig1446.3286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:1240..1679- (Laminarionema elsbetiae ELsaHSoW15)
GGAGTTTCTGAACCGAGAGTGCTCGTCTCCGACGCGGGTCCACTTGCGAC
GCACAGGGAGTTTCTGAACCGAGAGTGCTCGTCTCCGACGCGGGTCCACT
TGCGACGCACAGGGAGTATCGAGATCGAGCGCGGTGGGCACTTCGAGACC
CCGCCGTCGTCGCCGCTCCTGTCGTCCTCTCGAAGGCGAGAAGGAGGAGG
AGGACGAGGAGGAGGACGAACAAACCACCGCGATGCTTCCGGCAGCGGCA
GCCTAGCCGCCGCCGCGGCCACCACTACCTTCACCAGCGACGAGGAGTAT
CGAGATCGAGCGCGGTGGGCACTTCGAGACCCCGCCGTCGTCGCCGCTCC
TGTCGTCCTCTCGAAGGCGAGAAGGAGGAGGAGGACGAGGAGGAGGACGA
ACAAACCACCGCGATGCTTCCGGCAGCGGCAGCCTAGCCGCCGCCGCGGC
CACCACTACCTTCACCAGCGACGA
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