mRNA_L-elsbetiae_contig14456.3283.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14456.3283.1
Unique NamemRNA_L-elsbetiae_contig14456.3283.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14456.3283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14456contigL-elsbetiae_contig14456:274..799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size526
Cds size483
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.6033137-UTR-L-elsbetiae_contig14456:273..3161622815579.6033137-UTR-L-elsbetiae_contig14456:273..316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14456 274..316 +
1691682971.2769148-UTR-L-elsbetiae_contig14456:273..3161691682971.2769148-UTR-L-elsbetiae_contig14456:273..316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14456 274..316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.6163049-CDS-L-elsbetiae_contig14456:316..7991622815579.6163049-CDS-L-elsbetiae_contig14456:316..799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14456 317..799 +
1691682971.285067-CDS-L-elsbetiae_contig14456:316..7991691682971.285067-CDS-L-elsbetiae_contig14456:316..799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14456 317..799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14456.3283.1prot_L-elsbetiae_contig14456.3283.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14456 317..799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14456.3283.1

>prot_L-elsbetiae_contig14456.3283.1 ID=prot_L-elsbetiae_contig14456.3283.1|Name=mRNA_L-elsbetiae_contig14456.3283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
MSSGRDTLINTSTFRLAESRCLRAFNIGRSALGSDYVLRGRPCTLPSTVK
KQDAFYQSCRRFCYVYWTRSCRERRGRRLNVCSTRGTLRSFRGRPIVKSW
QLKVGVSVFRKKRSESLVIIETCKMWPCACVVLCFSFHLAPICGFWCLDV
FTCQPVTSKR*
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mRNA from alignment at L-elsbetiae_contig14456:274..799+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14456.3283.1 ID=mRNA_L-elsbetiae_contig14456.3283.1|Name=mRNA_L-elsbetiae_contig14456.3283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=526bp|location=Sequence derived from alignment at L-elsbetiae_contig14456:274..799+ (Laminarionema elsbetiae ELsaHSoW15)
AAATGGGAGTACCTAGACTGCAGTAGTTGTCCCGGCGAAGTCGATGAGCA
GCGGCCGTGACACTTTAATTAATACTTCTACTTTTCGTTTAGCGGAGAGT
AGATGTCTTCGTGCTTTCAACATCGGCCGTTCGGCCCTGGGCAGCGACTA
TGTACTACGGGGAAGACCTTGCACCTTGCCAAGCACCGTCAAGAAACAAG
ATGCCTTTTATCAGAGTTGTAGGCGCTTTTGCTACGTTTACTGGACACGT
TCGTGTCGAGAGCGAAGGGGCCGCCGCTTGAACGTGTGTTCCACCAGGGG
CACTCTTCGCTCGTTCAGGGGCCGACCCATCGTAAAAAGCTGGCAGCTGA
AAGTTGGCGTCAGCGTATTTCGGAAGAAACGGAGCGAATCGCTGGTTATC
ATCGAGACGTGTAAGATGTGGCCCTGTGCGTGTGTTGTGTTGTGTTTTTC
GTTCCACCTGGCACCAATCTGCGGCTTTTGGTGCTTGGATGTGTTTACGT
GTCAGCCGGTCACAAGCAAGAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14456:274..799+

>mRNA_L-elsbetiae_contig14456.3283.1 ID=mRNA_L-elsbetiae_contig14456.3283.1|Name=mRNA_L-elsbetiae_contig14456.3283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig14456:274..799+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAGCGGCCGTGACACTTTAATTAATACTTCTACTTTTCGTTTAGC
GGAGAGTAGATGTCTTCGTGCTTTCAACATCGGCCGTTCGGCCCTGGGCA
GCGACTATGTACTACGGGGAAGACCTTGCACCTTGCCAAGCACCGTCAAG
AAACAAGATGCCTTTTATCAGAGTTGTAGGCGCTTTTGCTACGTTTACTG
GACACGTTCGTGTCGAGAGCGAAGGGGCCGCCGCTTGAACGTGTGTTCCA
CCAGGGGCACTCTTCGCTCGTTCAGGGGCCGACCCATCGTAAAAAGCTGG
CAGCTGAAAGTTGGCGTCAGCGTATTTCGGAAGAAACGGAGCGAATCGCT
GGTTATCATCGAGACGTGTAAGATGTGGCCCTGTGCGTGTGTTGTGTTGT
GTTTTTCGTTCCACCTGGCACCAATCTGCGGCTTTTGGTGCTTGGATGTG
TTTACGTGTCAGCCGGTCACAAGCAAGAGGTAAATGAGCAGCGGCCGTGA
CACTTTAATTAATACTTCTACTTTTCGTTTAGCGGAGAGTAGATGTCTTC
GTGCTTTCAACATCGGCCGTTCGGCCCTGGGCAGCGACTATGTACTACGG
GGAAGACCTTGCACCTTGCCAAGCACCGTCAAGAAACAAGATGCCTTTTA
TCAGAGTTGTAGGCGCTTTTGCTACGTTTACTGGACACGTTCGTGTCGAG
AGCGAAGGGGCCGCCGCTTGAACGTGTGTTCCACCAGGGGCACTCTTCGC
TCGTTCAGGGGCCGACCCATCGTAAAAAGCTGGCAGCTGAAAGTTGGCGT
CAGCGTATTTCGGAAGAAACGGAGCGAATCGCTGGTTATCATCGAGACGT
GTAAGATGTGGCCCTGTGCGTGTGTTGTGTTGTGTTTTTCGTTCCACCTG
GCACCAATCTGCGGCTTTTGGTGCTTGGATGTGTTTACGTGTCAGCCGGT
CACAAGCAAGAGGTAA
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