mRNA_L-elsbetiae_contig14447.3279.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14447.3279.1
Unique NamemRNA_L-elsbetiae_contig14447.3279.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: D7FYG8_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYG8_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.350e-41
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLPMGS 240
            V+PLEGR+ERL KGDDVLAVYVDTTSFYHATIAIPPRGRG QIGNGGTAHVQFVDDADEHGVTP RAVPIIHIIKLP+GS
Sbjct:  192 VIPLEGRTERLSKGDDVLAVYVDTTSFYHATIAIPPRGRG-QIGNGGTAHVQFVDDADEHGVTPHRAVPIIHIIKLPLGS 270          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A835ZFQ3_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.730e-13
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   16 GRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLP 231
            G   +L KG+ V+AVY DTTSFY A I++PPR RG+QI +  TA VQF DDAD+ G+TP R +   HI+ LP
Sbjct:  220 GSGTKLSKGESVMAVYPDTTSFYKAVISVPPR-RGSQI-HSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 289          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7S2EZA3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EZA3_TRICV)

HSP 1 Score: 69.7 bits (169), Expect = 2.220e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   16 GRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLP 231
            G  +RL +GD + AVY DTTSFY AT+A PPR      G      V F DDADEHG+T  +AV + H++++P
Sbjct:   38 GGVDRLSRGDVIYAVYPDTTSFYQATVAQPPR---KVSGGESFVMVNFKDDADEHGITHDKAVLMKHVMRVP 106          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7S2WVH2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.310e-10
Identity = 36/77 (46.75%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLP 231
            V+ L+   E LQKGD VLAV+ DTTSFY   I+ P + R A  G      VQF DD DE G  P R +P  H++  P
Sbjct:  183 VIRLDEAVENLQKGDTVLAVFPDTTSFYRGRISKPVKNRSASSGGDSEVFVQFDDDEDETGRLPHRCIPARHVMPDP 259          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7S2W6R2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6R2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-9
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   28 RLQKGDDVLAVYVDTTSFYHATI-AIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLP 231
            +L KG++VLAVY DTTSFY A + ++  +  GA  G+     VQF DD D+ G+ P R+V I+HII+ P
Sbjct:  188 KLSKGEEVLAVYPDTTSFYPAIVTSVSRKMGGALAGDSSFCTVQFHDDEDDSGINPDRSVKILHIIRPP 256          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7S2G351_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G351_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.330e-8
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGT-AHVQFVDDADEHGVTPQRAVPIIHIIKLP 231
            VV LEG   RL +G++V A+Y DTTSFY A +   PR R A   NG     VQF DDADE G  P R + + ++I+ P
Sbjct:  111 VVMLEGA--RLTRGEEVYAIYPDTTSFYPAVVTSAPR-RSASAANGPVFCTVQFHDDADETGNNPDRQIALQYVIRPP 185          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7S2XXI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXI6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 9.410e-8
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAH--VQFVDDADEHGVTPQRAVPIIHIIKLPMGS 240
            V+ LE     L+KGD+VLA++ +TTSFY A I+ PP+    + GN  T    V+FVDD D+ G TP R V  ++++ +P  +
Sbjct:   88 VLKLEPGLGDLEKGDEVLAIFPETTSFYRAKISKPPK----KSGNPATQECIVKFVDDEDDTGRTPNRRVLSMYVVPIPQDN 165          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A7R9Y978_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y978_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-7
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKL 228
            VV L    + L++GD+VLAV+ DTTSFY   I+   R RGA+      A VQFVDD D HG TP R +P   +I++
Sbjct:  153 VVGLSEGLDGLERGDEVLAVFPDTTSFYRGFISKALR-RGAE-----EASVQFVDDEDGHGNTPHRRIPARFVIRM 222          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: A0A6H5L6S1_9PHAE (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.310e-7
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATI-AIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLPMG 237
            V+ LE  ++ +QKG+ VLAV+ DTTSFY  TI  +P    GA+        V+F DDAD+ G TP R++P  +++ LP G
Sbjct:  152 VIRLEDSTKGVQKGERVLAVFPDTTSFYLGTIHRVPKPAPGAER----RIEVKFNDDADDTGRTPGRSLPARYVVPLPEG 227          
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 6.270e-7
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1
Query:    1 VVPLEGRSERLQKGDDVLAVYVDTTSFYHATI-AIPPRGRGAQIGNGGTAHVQFVDDADEHGVTPQRAVPIIHIIKLPMG 237
            V+ LE  ++ +QKG+ VLAV+ DTTSFY  TI  +P    GA+        V+F DDAD+ G TP R +P  +++ LP G
Sbjct:  424 VIRLEDSTKGVQKGERVLAVFPDTTSFYLGTIHRVPKPAPGAER----RIEVKFNDDADDTGRTPGRPLPARYVVPLPEG 499          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14447.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FYG8_ECTSI3.350e-4192.50SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A835ZFQ3_9STRA5.730e-1355.56SGF29 tudor-like domain-containing protein n=1 Tax... [more]
A0A7S2EZA3_TRICV2.220e-1148.61Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2WVH2_9STRA3.310e-1046.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2W6R2_9STRA6.000e-947.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G351_9STRA5.330e-847.44Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XXI6_9STRA9.410e-841.46Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7R9Y978_9STRA1.570e-747.37Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6H5L6S1_9PHAE2.310e-743.75SGF29 C-terminal domain-containing protein n=1 Tax... [more]
D7FGV9_ECTSI6.270e-743.75SGF29 C-terminal domain-containing protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14447contigL-elsbetiae_contig14447:2956..4169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.3
Seed ortholog evalue4.9e-35
Seed eggNOG ortholog2880.D7FYG8
Preferred nameTAF3
KEGG koko:K11364,ko:K13154,ko:K14650,ko:K19197
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000428,GO:0002039,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0012505,GO:0016020,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0023051,GO:0030880,GO:0031090,GO:0031208,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032507,GO:0032774,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043433,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045185,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051235,GO:0051252,GO:0051253,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071704,GO:0072595,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.methylated histone binding
EggNOG OGsCOG5034@1,KOG1973@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036,ko03041
Ec32 ortholog descriptionSGF29 tudor-like domain protein
Ec32 orthologEc-19_001060.1
Exons2
Model size919
Cds size243
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14447.3279.1prot_L-elsbetiae_contig14447.3279.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14447 3630..4169 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1097682-UTR-L-elsbetiae_contig14447:2955..36291622815579.1097682-UTR-L-elsbetiae_contig14447:2955..3629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14447 2956..3629 -
1691682970.9467192-UTR-L-elsbetiae_contig14447:2955..36291691682970.9467192-UTR-L-elsbetiae_contig14447:2955..3629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14447 2956..3629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.1216784-CDS-L-elsbetiae_contig14447:3629..37431622815579.1216784-CDS-L-elsbetiae_contig14447:3629..3743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14447 3630..3743 -
1691682970.9603798-CDS-L-elsbetiae_contig14447:3629..37431691682970.9603798-CDS-L-elsbetiae_contig14447:3629..3743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14447 3630..3743 -
1622815579.1344817-CDS-L-elsbetiae_contig14447:4040..41691622815579.1344817-CDS-L-elsbetiae_contig14447:4040..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14447 4041..4169 -
1691682970.97129-CDS-L-elsbetiae_contig14447:4040..41691691682970.97129-CDS-L-elsbetiae_contig14447:4040..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14447 4041..4169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14447.3279.1

>prot_L-elsbetiae_contig14447.3279.1 ID=prot_L-elsbetiae_contig14447.3279.1|Name=mRNA_L-elsbetiae_contig14447.3279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=81bp
VVPLEGRSERLQKGDDVLAVYVDTTSFYHATIAIPPRGRGAQIGNGGTAH
VQFVDDADEHGVTPQRAVPIIHIIKLPMGS*
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mRNA from alignment at L-elsbetiae_contig14447:2956..4169-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14447.3279.1 ID=mRNA_L-elsbetiae_contig14447.3279.1|Name=mRNA_L-elsbetiae_contig14447.3279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1214bp|location=Sequence derived from alignment at L-elsbetiae_contig14447:2956..4169- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGCCGCTGGAGGGCCGGTCGGAGCGGCTGCAGAAGGGGGACGACGT GCTGGCGGTGTACGTGGACACTACCTCCTTCTACCACGCCACCATTGCCA TCCCGCCCAGGGGCAGAGGCGCCCAGATCGTAAGTCGTCCATCCATGGGC CCTCCTCCCTCTCTGCCTTGTGTGCTGGCATGCATGATTGATTTTGTTGT GTCAATATCGGCAATAAATTACTCGCTTGCGTCAACAACGACGCATCCAG AGCCGTGGAACTCTCTGCACACTCTCTGTCCTTCTTTTTCACTGATGCTC CTGACAAGCGTGTGTGCAATGGTATTCGCGTAGGTGGGTACAAAGGTAGT GTGATCGACGACGCCCTCTCCCCTGCTTCGCCACGCTGTAACTGCCATTT TATTTTTTTTATCTCCTCTCCCTCAGGGAAACGGTGGAACGGCGCACGTG CAGTTTGTGGACGATGCGGACGAGCACGGTGTAACGCCGCAGCGGGCGGT GCCGATTATCCATATCATAAAGTTGCCGATGGGTTCTTGATTTTTTTTTT TCAGTTTCCCAGAGGGTCGATTTTTTTCATGCATGTGCGTATGCTCCGGG TTCGCACGTGGGAGCGCGTGATGTTGTCAATAATTGTTGGGTTACTAATA ATGTAGAAGGGATGTGTCCGTGCGGAGGGGGTGGGAGAGACGGAGATAAT AAGCATGCATACGAAAAATATCAGAAAAATCGTGCCAGTACAAAAGCCAT GTGTTAGTGTGTCTTCACAACATGTAGTGTTAGTCCCCGGGGAACTACCA TACTTTCTTCACAGGGTAGACGTATGCACGGGTACATTAGACGCTGACGT TTTATAAAACAGTTTTTTTATGGATGTATGATATGTACAAAGTAAAAATA AATTTTATTTTCTTACCATTCATTGTGTGCGGCACAATCGGTGGGGAGGA CTAGATTTGGGCGGGCCTGACCGACGAGAACGCTGCACGGAACACCCCGG CTTGTTGGGGACCAAGATAGAACCAGGGGTTGTGGGGTGTATCCCCCGGT GGTGTTGGCCTGTTCAGTTTTGTTTTTTCACATGTTTTAACGTTTCCAGA CTATCATGTTCGTAGTTTTTTTATTTTTATGAACACTCCGGTCCACCTTT GTTTATGCAGTACATATTTCCTTTTTATACCTATTAGGGTATAAGTTAGC CTGCGACCACGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14447:2956..4169-

>mRNA_L-elsbetiae_contig14447.3279.1 ID=mRNA_L-elsbetiae_contig14447.3279.1|Name=mRNA_L-elsbetiae_contig14447.3279.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=486bp|location=Sequence derived from alignment at L-elsbetiae_contig14447:2956..4169- (Laminarionema elsbetiae ELsaHSoW15)
GTGGTGCCGCTGGAGGGCCGGTCGGAGCGGCTGCAGAAGGGGGACGACGT
GCTGGCGGTGTACGTGGACACTACCTCCTTCTACCACGCCACCATTGCCA
TCCCGCCCAGGGGCAGAGGCGCCCAGATCGTGGTGCCGCTGGAGGGCCGG
TCGGAGCGGCTGCAGAAGGGGGACGACGTGCTGGCGGTGTACGTGGACAC
TACCTCCTTCTACCACGCCACCATTGCCATCCCGCCCAGGGGCAGAGGCG
CCCAGATCGGAAACGGTGGAACGGCGCACGTGCAGTTTGTGGACGATGCG
GACGAGCACGGTGTAACGCCGCAGCGGGCGGTGCCGATTATCCATATCAT
AAAGTTGCCGATGGGTTCTTGAGGAAACGGTGGAACGGCGCACGTGCAGT
TTGTGGACGATGCGGACGAGCACGGTGTAACGCCGCAGCGGGCGGTGCCG
ATTATCCATATCATAAAGTTGCCGATGGGTTCTTGA
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