mRNA_L-elsbetiae_contig14421.3267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14421.3267.1
Unique NamemRNA_L-elsbetiae_contig14421.3267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.480e-18
Identity = 64/157 (40.76%), Postives = 82/157 (52.23%), Query Frame = 1 
Query:  442 CPDGVVGILGILTGEAMVCCDIECGECGGFGC---GGRPG-GAANCCIGGPRGIIATSGDCADSGAAPCVISTEGETPAPTQVSTCSNGIPGIENEAGTACCSLDCINPDTGNPQCGGTGCTDFGPG---GSDACCTGAVTRDGMDCSVAMASPCAI 891
            C +G+ GI     G  +VCC +EC +CGG GC   G   G G+ +CC GG   I A+   C D+  APC+I +      PT V TCSNG+ GI+   G  CC L+C        QCGGTGCT  G     GS++CC G +   G  C     +PC I
Sbjct:  472 CSNGLEGI----EGNGVVCCPLECNQCGGTGCTMSGSAAGLGSESCCGGG---IKASGAYCDDTNEAPCIIGSR-----PTTVETCSNGLEGIDGN-GVVCCPLECN-------QCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: H6WBB3_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB3_VAULI)

HSP 1 Score: 87.0 bits (214), Expect = 3.120e-16
Identity = 68/189 (35.98%), Postives = 81/189 (42.86%), Query Frame = 1 
Query:    4 CQTFPGGPSSCCPGGVNGVVANAPDCSESGAAPCFFGDDPTPAPTAEEXXXXXXEAEMCIEGIVGILSGDGSACCDIACGRCGGFMCQTFPGGPSSCCPGGVNGVVANAPDCSESGTAPCRIVEAXXXXXXXXXXXXXXEDQLGLPCPDGVVGILGILTGEAMVCCDIECGECGGFGCGGRPGGAANCC 570
            C T PGG  +CC G V  +      CS +GA PC   DD T  PT  +          C  G   I  G    CC  +CG CGGF C + PGG ++CC   VN        CS +GT PC I                 +  L   CP   V     +      CC   CG CGG+GC  RPGGA+NCC
Sbjct:  121 CNTRPGGQYACCTGSVTAL------CS-TGARPCVA-DDVTDPPTVTDPPTG------CPSG--SIPDGYDEKCCSESCGSCGGFGCDSRPGGAAACCTSTVN------TPCS-TGTLPCVI-----------------DSVLPSTCPANSV-----MDSSETKCCPSYCGTCGGYGCQSRPGGASNCC 264
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: D7G8L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8L8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-13
Identity = 79/247 (31.98%), Postives = 103/247 (41.70%), Query Frame = 1 
Query:  178 CIEGIVGILSGDGSACCDIACGRCGGFMCQ----TFPGGPSSCCPGGVNGVVANAPDCSESGTAPCRIVEAXXXXXXXXXXXXXXEDQLGLPCPDGVVGILGILTGEAMVCCDIECGECGGFGCGGRPG----GAANCCIGGPRGIIATSGDCADSGAAPCVISTEGETPAPTQVSTCSNGIPGIENEAGTACCSLDCINPDTGNPQCGGTGCTDFGPG---GSDACCTGAVTRDGMDCSVAMASPC 885
            C +GI GI  G+G  CC   CG+CGG  C      F  G  SCC GGV    AN   C  +G APC                   E +    C +G+ GI     G  +VCC ++CG+CGG GC G       G+ +CC GG   + + +  C  +G APC+  +  E                   EA      L  +N  T   QCGG GC+  G     GS +CC   V   G  C +   +PC
Sbjct:   24 CNDGIEGI-DGNGVVCCPRHCGQCGGEGCTGSGADFGLGSESCCGGGVKS--ANN-YCDVTGKAPC-------------IYGSPPEGE----CNNGIEGI----DGNGVVCCPLDCGQCGGEGCSGSGADFGLGSESCCGGG---VKSANNYCDVTGKAPCIYGSPPE-------------------EA-----LLTTVNART--QQCGGEGCSSAGAASGLGSGSCCGHGVKSSGRYCDITEEAPC 216
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: D7FHN7_ECTSI (von Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.620e-11
Identity = 51/184 (27.72%), Postives = 73/184 (39.67%), Query Frame = 1 
Query:  166 EAEMCIEGIVGILSGDGSACCDIACGRCGGFMCQTFPGGPSSCCPGGVNGVVANAPDCSESGTAPCRIVEAXXXXXXXXXXXXXXEDQLGLPCPDG-------------------------VVGILGILTGEAMVCCDIECGECGGFGCGGRPGGAANCCIGGPRGIIATSGDCADSGAAPCVI 642
            + E C  G+ GI S +G ACC + CG CGG  C   PGG   CC    + +V     C+ +G +PC I                  ++  +P   G                           G+ G+ +    VCC  +CG+CGG GCG       +CCI     I+     C++ G APC +
Sbjct:  103 DIERCSNGVYGIESSNGKACCALTCGSCGGVGCSGRPGGSYDCC---ESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEF---GEDCCI---TEIMDYGQPCSEIGTAPCYL 277
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: A0A6H5JGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.670e-10
Identity = 55/162 (33.95%), Postives = 72/162 (44.44%), Query Frame = 1 
Query:  178 CIEGIVGILSGDGSACCDIACGRCGGFMCQTFPG----GPSSCCPGGVNGVVANAPDCSESGTAPCRIVEAXXXXXXXXXXXXXXEDQLGLPCPDGVVGILGILTGEAMVCCDIECGECGGFGC---GGRPG-GAANCCIGGPRGIIATSGDCADSGAAPCV 639
            C +GI GI  G+G  CC + CG+C G  C  F      G  SCC GGV         C  +G APC                   E +    C  G+ GI     G  +VCC +ECG+CGG GC   G   G G+ +CC     G+ ++   C  +G APC+
Sbjct:   48 CNDGIEGI-DGNGVVCCPLECGQCAGTGCTNFGADFGLGSESCCGGGVKDA---GNYCDVTGEAPC-------------IYGSPPEGE----CSGGIEGI----DGNGVVCCPLECGQCGGTGCSSAGAASGLGSESCC---ESGVDSSGRYCDVTGEAPCI 181
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.310e-9
Identity = 54/155 (34.84%), Postives = 69/155 (44.52%), Query Frame = 1 
Query:  433 GLPCPDGVVGILGILTGEAMVCCDIECGECGGFGCGGRPGGAA-NCCIGGPRGIIATSGDCADSGAAPCVISTEGETPAPTQVSTCSNGIPGIENEAGTACCSLDCINPDTGNPQCGGTGCTDFGPGGSDACCTGAVTRDGMDCSVAMASPCAIT 894
            G  C +G+ G+      +  VCC +ECG CGG GCG RPG    +CC      I   +  C+ +  APCVI  E E        TCSNG+       G  CCS  C         CGGTGC   G    D CCT  +      C    ++PC ++
Sbjct:   21 GTTCSNGLSGLE-----KGGVCCPVECGTCGGTGCGSRPGLTKYDCCT---STIKEDNHLCSVTKEAPCVIDEETEADP-----TCSNGV-----AKGDICCSAGC-------GYCGGTGCAGRGGLSGDECCTSKIAAANKSCDD-QSAPCVMS 149
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: A0A836CQF3_9STRA (Cation_ATPase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQF3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.750e-5
Identity = 33/78 (42.31%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:  442 CPDGVVGILGILTGEAMVCCDIECGECGGFGCGGRPGGAANCCIGGPRGIIATSGDCADSGAAPCVISTEGETPAPTQ 675
            C  GV G+LG        CC   CGECGG+GC GRPGGA  CC      I ++   C+ +G+APCV     + P  T+
Sbjct:   24 CGGGVEGLLGP---NKQSCCPYSCGECGGYGCAGRPGGADACC---ESEIYSSKPLCSKAGSAPCVRDPPSDPPKKTE 95
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.230e-5
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:  166 EAEMCIEGIVGILSGDGSACCDIACGRCGGFMCQTFPGGPSSCCPGGVNGVVANAPDCSESGTAPCRI 369
            + + C  G+ GI S +G ACC +ACG CGG  C   PGG   CC    + +V     C+ +G +PC I
Sbjct:  694 DMQRCSNGVYGIESPNGKACCALACGSCGGVGCSRRPGGSYDCC---ESEIVEEGEACAATGASPCYI 758
[Close]
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Match: A0A6H5JQM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.650e-5
Identity = 26/66 (39.39%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:  166 EAEMCIEGIVGILSGDGSACCDIACGRCGGFMCQTFPGGPSSCCPGGVNGVVANAPDCSESGTAPC 363
            + E C  G+ GI S +G ACC + CG CGG  C   PGG   CC    + +V     C+ +G +PC
Sbjct:  166 DMERCSNGVYGIESSNGLACCALTCGSCGGVGCSRRPGGSYDCC---ESEIVEEGEACAATGASPC 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14421.3267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FQV4_ECTSI3.480e-1840.76Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
H6WBB3_VAULI3.120e-1635.98Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
D7G8L8_ECTSI1.120e-1331.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHN7_ECTSI2.620e-1127.72von Willebrand A domain containing protein n=2 Tax... [more]
A0A6H5JGP9_9PHAE6.670e-1033.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNF5_9PHAE3.310e-934.84MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A836CQF3_9STRA1.750e-542.31Cation_ATPase_N domain-containing protein n=1 Tax=... [more]
D7FHN6_ECTSI2.230e-539.71Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JQM4_9PHAE2.650e-539.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14421contigL-elsbetiae_contig14421:814..4077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue4.6e-22
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Exons7
Model size895
Cds size894
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.9604554-CDS-L-elsbetiae_contig14421:813..10311622815577.9604554-CDS-L-elsbetiae_contig14421:813..1031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 814..1031 -
1691682970.2957995-CDS-L-elsbetiae_contig14421:813..10311691682970.2957995-CDS-L-elsbetiae_contig14421:813..1031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 814..1031 -
1622815577.9729557-CDS-L-elsbetiae_contig14421:1242..12661622815577.9729557-CDS-L-elsbetiae_contig14421:1242..1266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 1243..1266 -
1691682970.3099616-CDS-L-elsbetiae_contig14421:1242..12661691682970.3099616-CDS-L-elsbetiae_contig14421:1242..1266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 1243..1266 -
1622815577.9895382-CDS-L-elsbetiae_contig14421:1705..19331622815577.9895382-CDS-L-elsbetiae_contig14421:1705..1933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 1706..1933 -
1691682970.3176982-CDS-L-elsbetiae_contig14421:1705..19331691682970.3176982-CDS-L-elsbetiae_contig14421:1705..1933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 1706..1933 -
1622815578.001582-CDS-L-elsbetiae_contig14421:2283..23341622815578.001582-CDS-L-elsbetiae_contig14421:2283..2334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 2284..2334 -
1691682970.3258588-CDS-L-elsbetiae_contig14421:2283..23341691682970.3258588-CDS-L-elsbetiae_contig14421:2283..2334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 2284..2334 -
1622815578.014421-CDS-L-elsbetiae_contig14421:2613..28171622815578.014421-CDS-L-elsbetiae_contig14421:2613..2817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 2614..2817 -
1691682970.3366687-CDS-L-elsbetiae_contig14421:2613..28171691682970.3366687-CDS-L-elsbetiae_contig14421:2613..2817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 2614..2817 -
1622815578.029698-CDS-L-elsbetiae_contig14421:3592..36431622815578.029698-CDS-L-elsbetiae_contig14421:3592..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 3593..3643 -
1691682970.3457022-CDS-L-elsbetiae_contig14421:3592..36431691682970.3457022-CDS-L-elsbetiae_contig14421:3592..3643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 3593..3643 -
1622815578.044462-CDS-L-elsbetiae_contig14421:3959..40771622815578.044462-CDS-L-elsbetiae_contig14421:3959..4077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 3960..4077 -
1691682970.3564513-CDS-L-elsbetiae_contig14421:3959..40771691682970.3564513-CDS-L-elsbetiae_contig14421:3959..4077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14421 3960..4077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14421.3267.1prot_L-elsbetiae_contig14421.3267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14421 814..4077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14421.3267.1

>prot_L-elsbetiae_contig14421.3267.1 ID=prot_L-elsbetiae_contig14421.3267.1|Name=mRNA_L-elsbetiae_contig14421.3267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=298bp
MCQTFPGGPSSCCPGGVNGVVANAPDCSESGAAPCFFGDDPTPAPTAEET
PAPTAEAEMCIEGIVGILSGDGSACCDIACGRCGGFMCQTFPGGPSSCCP
GGVNGVVANAPDCSESGTAPCRIVEATPAPTVEETPAPTEEDQLGLPCPD
GVVGILGILTGEAMVCCDIECGECGGFGCGGRPGGAANCCIGGPRGIIAT
SGDCADSGAAPCVISTEGETPAPTQVSTCSNGIPGIENEAGTACCSLDCI
NPDTGNPQCGGTGCTDFGPGGSDACCTGAVTRDGMDCSVAMASPCAIT
back to top

mRNA from alignment at L-elsbetiae_contig14421:814..4077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14421.3267.1 ID=mRNA_L-elsbetiae_contig14421.3267.1|Name=mRNA_L-elsbetiae_contig14421.3267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3264bp|location=Sequence derived from alignment at L-elsbetiae_contig14421:814..4077- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCAGACCTTCCCTGGGGGTCCAAGCAGCTGCTGCCCCGGCGGAGT
GAACGGCGTCGTTGCCAACGCACCCGACTGCTCCGAGTCCGGAGCGGCCC
CGTGCTTCTTCGGTGACGGTAAGGAGCCTCCACACCGTTTAGTTATTTTG
CTCTAATTTAGCCCCAAAGCCTTTACACACAATCTTGATCCCCCATGTTC
GAAATATGCAGAGCCTTCAAGTGTGACGCCCCCAACGCCTTTACATCGAC
CAACCATTCGGAGCAACAGGGCTGCTACCCATTGCAAGACCTCTCCACGG
CACGGCTTGCCGTAGACAATTGTTTACCTGCCACGTCTTCTCGCTGGCTC
TCCGTTGCTGATCTTTGCGTGTGTTTTTATCCGGTGTATCCAAATGCCCT
GACGTCCTTGTCTTCCGTGGTCCTCTCTCGACAGATCCCACTCCGGCTCC
CACGGCGGAGGAGACCCCAGCTCCCACGGCCGAAGGTGAGCTCACGTTGG
ATGTGCGGAGACCGATGCATCCTTCAGCGCCTCCTCTGTCTGTGTAACGG
TGCCAGCGTTGTGTGAGGATATGATGCGTAGTGTCTCTTCCACTCTTATT
CGAAGCCAACTGGCCACCTTGAACGTTTTAGCGCTGTAGAGAGGGTAGCG
CAGAGGAATGGAGCAAGGTGAACACGTATAAGGACTTGCAGGAGTTGGTC
AGCTTCAGGAGCGGCCAATACGTGGAGTATTTTCCCGCCCACCCACCCAC
CCCTTTCCTTGGAAGGTGGGGGGAGGAAGAGGAGACCGACAGAGTGGCTA
GAAACGACTTCTAGTTGGCGTAGGATATGGTAGGATACAATTCGGGGACT
TGGTCATCCGAGCCTGCTGCTTGCAGTAAGACTAGTTCCCTTCACCGGAG
GATAGAAAATCGTCGGTAGTTGGTACGGAGGGAAGAGGCAGTGTTCGGGC
AGAGAGGCAGAGACACGGTGCAGCTGGCGCAGAAATATATTTGCGGGAAC
GTGGCTCTGCCGGTTGGTATTTCCCTCTTCCCTCGGGGGTCTCGGAAAAT
ATTTAAAGGAAAACTTGAAATAAAACAAAACAATAAACATATTTGTGTAC
ATACGGTAGGTGTGATGAAATGAACATGTGAACACATCAACCTTTGGTGC
ACCGATCAATTTGCCCCGGTTCTTTTCCAAGGGTGCTCCTGTGCAACGCG
AACTCCGAATTTCTACGTGCATCGGTTTAACTACTTTTTGTCGTCTACAC
CTACCCGCAGCCGAAATGTGCATCGAGGGCATCGTCGGCATCTTGTCCGG
TGACGGCAGCGCGTGCTGCGACATCGCGTGCGGACGGTGCGGAGGGTTCA
TGTGCCAGACCTTCCCTGGGGGTCCAAGCAGCTGCTGCCCCGGCGGAGTG
AACGGCGTCGTTGCCAACGCACCCGACTGCTCCGAGTCCGGGACTGCCCC
TTGCCGCATCGTCGGTAAGGCGTCTTGGGAGAACTGCTGTTGTTGATGTT
GGTGGTGCCGTCATTCTTCAAGCTTGGCACCGCACCGGATTTCCAAGTGC
TAGAAGTATACCCTCAAGCGGCACGCCTTGCTTCACTTGCTTTTCACTTC
ATTCGATACAAACATGCTGGCGCTGGGCGGGCCTTTGCCTATTATTATAG
TGGAGAATCCTCGTTTCTCGCGGGCTCCCGCTCGCTAACCCACGGACGCC
GTCGTCTCTTCCATGGCTCTGTTCTCCTTGCCCCTCTGGACAGAGGCTAC
TCCGGCTCCCACCGTTGAGGAGACCCCGGCCCCCACTGAGGAAGGTGGGC
TCTCCCGTCGGCCATGCAGACCGAGGCGCCCTTCGCCCTTTGCCCGCCAG
TCAGTATGATCGTGATCGGTTGAAATCTTAGGACCGCACCTACTTGCGGT
TTCGCCAATCGTTCGACTTTCGTGCAACTCGAGGGCGAATGTCGCAGGAC
TTCGCGCTGCGTGACAGCCGCACTATTTCAGATTTCCTGCGTTTTTTTTT
CCGCACCGATTACATCATCGATCTTGTCTCGTCCCGGTGTGTCTACGCTA
TAGCGGAAAGTGCTGTGGGAGCGAAACAATTGGTGTGTAGCGAAGACTGT
GCGCTCCACGGTGAACATGTTGCCGTCTCCTGCCCCTTCCGCAGATCAGC
TCGGATTGCCCTGTCCCGACGGCGTCGTCGGCATCTTGGGCATCCTGACC
GGCGAGGCCATGGTATGCTGCGACATTGAGTGCGGAGAGTGCGGGGGGTT
CGGCTGCGGGGGCCGGCCCGGAGGTGCAGCCAACTGTTGTATCGGTGGGC
CGAGAGGCATAATTGCAACCTCCGGCGACTGCGCCGATTCCGGGGCTGCC
CCGTGCGTGATCAGCACCGAGGGTAAGTTTCATTGCCACTGTTCTTACAA
TCCGACTGCGCCATGCCATCACGCAGAGACGAACAAGCTTAGGCGACAGT
TTGACGGTTTTGGGGAAACGAGCCTCAGATTCGGCGAGGTTCGCCCAATG
CTGTATCACTACCGAATGAAGAAGGATGTCCAAAAATGGATGTCAAAAGG
ATGTCATCGCTCACCTCCCGTGTATATGGTGAAAGCATGAATCATATATA
GCCGTGCATCAACCTTGGTCGTCATTTGGCGACTGCCAAACTAACCCTGA
AGTCTAAAAACAAAACGAATCAGCTGCTCCGCCAACCACTTGGAGGGCTC
CCTCAGAGAATTGCACGCGAGCGCCCTCCCGAAACTGAAGCTGATATCAC
CCCCCCTGCTGTCACCGATCCGGCGGCCATGCGGATTTGTGGGGAAACGT
ACATGCGGCAGGCGAGACTCCGGCCCCGACACAAGGTATGCACAGCAAAG
ACTCCTTCTTGTAGATATGCTTGTATGGCTCCCAGGCAGATTTCTGTTCA
ATATATGGCTTTGTGCGAGACGAGAAGCACCGCACTCGTCGCCCTTTTTT
TTGTTTGGTCGTCTGGCGTTTCACGGAGCGGTCCTTACCGAGCCGATGAC
GTGTCCCTCGCCCGCACCTCCCCGCTTCCGTCCCGTCCCCAAGCAGTGTC
CACGTGCAGCAACGGCATCCCGGGAATCGAGAACGAGGCAGGGACGGCGT
GCTGCTCGCTCGACTGCATCAACCCCGACACCGGGAATCCGCAATGCGGC
GGAACAGGATGTACCGACTTTGGGCCTGGAGGCAGCGACGCGTGCTGCAC
CGGTGCTGTCACTCGGGACGGCATGGACTGTTCGGTGGCCATGGCATCTC
CGTGCGCCATCACT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14421:814..4077-

>mRNA_L-elsbetiae_contig14421.3267.1 ID=mRNA_L-elsbetiae_contig14421.3267.1|Name=mRNA_L-elsbetiae_contig14421.3267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1788bp|location=Sequence derived from alignment at L-elsbetiae_contig14421:814..4077- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCAGACCTTCCCTGGGGGTCCAAGCAGCTGCTGCCCCGGCGGAGT
GAACGGCGTCGTTGCCAACGCACCCGACTGCTCCGAGTCCGGAGCGGCCC
CGTGCTTCTTCGGTGACGATGTGCCAGACCTTCCCTGGGGGTCCAAGCAG
CTGCTGCCCCGGCGGAGTGAACGGCGTCGTTGCCAACGCACCCGACTGCT
CCGAGTCCGGAGCGGCCCCGTGCTTCTTCGGTGACGATCCCACTCCGGCT
CCCACGGCGGAGGAGACCCCAGCTCCCACGGCCGAAGATCCCACTCCGGC
TCCCACGGCGGAGGAGACCCCAGCTCCCACGGCCGAAGCCGAAATGTGCA
TCGAGGGCATCGTCGGCATCTTGTCCGGTGACGGCAGCGCGTGCTGCGAC
ATCGCGTGCGGACGGTGCGGAGGGTTCATGTGCCAGACCTTCCCTGGGGG
TCCAAGCAGCTGCTGCCCCGGCGGAGTGAACGGCGTCGTTGCCAACGCAC
CCGACTGCTCCGAGTCCGGGACTGCCCCTTGCCGCATCGTCGCCGAAATG
TGCATCGAGGGCATCGTCGGCATCTTGTCCGGTGACGGCAGCGCGTGCTG
CGACATCGCGTGCGGACGGTGCGGAGGGTTCATGTGCCAGACCTTCCCTG
GGGGTCCAAGCAGCTGCTGCCCCGGCGGAGTGAACGGCGTCGTTGCCAAC
GCACCCGACTGCTCCGAGTCCGGGACTGCCCCTTGCCGCATCGTCGAGGC
TACTCCGGCTCCCACCGTTGAGGAGACCCCGGCCCCCACTGAGGAAGAGG
CTACTCCGGCTCCCACCGTTGAGGAGACCCCGGCCCCCACTGAGGAAGAT
CAGCTCGGATTGCCCTGTCCCGACGGCGTCGTCGGCATCTTGGGCATCCT
GACCGGCGAGGCCATGGTATGCTGCGACATTGAGTGCGGAGAGTGCGGGG
GGTTCGGCTGCGGGGGCCGGCCCGGAGGTGCAGCCAACTGTTGTATCGGT
GGGCCGAGAGGCATAATTGCAACCTCCGGCGACTGCGCCGATTCCGGGGC
TGCCCCGTGCGTGATCAGCACCGAGGATCAGCTCGGATTGCCCTGTCCCG
ACGGCGTCGTCGGCATCTTGGGCATCCTGACCGGCGAGGCCATGGTATGC
TGCGACATTGAGTGCGGAGAGTGCGGGGGGTTCGGCTGCGGGGGCCGGCC
CGGAGGTGCAGCCAACTGTTGTATCGGTGGGCCGAGAGGCATAATTGCAA
CCTCCGGCGACTGCGCCGATTCCGGGGCTGCCCCGTGCGTGATCAGCACC
GAGGGCGAGACTCCGGCCCCGACACAAGGCGAGACTCCGGCCCCGACACA
AGTGTCCACGTGCAGCAACGGCATCCCGGGAATCGAGAACGAGGCAGGGA
CGGCGTGCTGCTCGCTCGACTGCATCAACCCCGACACCGGGAATCCGCAA
TGCGGCGGAACAGGATGTACCGACTTTGGGCCTGGAGGCAGCGACGCGTG
CTGCACCGGTGCTGTCACTCGGGACGGCATGGACTGTTCGGTGGCCATGG
CATCTCCGTGCGCCATCACTTGTCCACGTGCAGCAACGGCATCCCGGGAA
TCGAGAACGAGGCAGGGACGGCGTGCTGCTCGCTCGACTGCATCAACCCC
GACACCGGGAATCCGCAATGCGGCGGAACAGGATGTACCGACTTTGGGCC
TGGAGGCAGCGACGCGTGCTGCACCGGTGCTGTCACTCGGGACGGCATGG
ACTGTTCGGTGGCCATGGCATCTCCGTGCGCCATCACT
back to top