mRNA_L-elsbetiae_contig1442.3266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1442.3266.1
Unique NamemRNA_L-elsbetiae_contig1442.3266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.860e-24
Identity = 58/75 (77.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query: 1021 KNSFFAQLHAMERKKGTIGTTHATEGXXXXXXAEP----IQSSDWECLKCGKSNYKKASACDRCHALKRMTLWRD 1233
            KNSFFAQL A ERKKGT+GT HAT     XXX       IQSSDWECLKCGKSNYK ASACDRCHALKRMTLWRD
Sbjct:  243 KNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD 317
[Close]
BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A5D6XEP5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEP5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.470e-6
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 1 
Query: 1024 NSFFAQLHAMERKKGTIGTTHATEGXXXXXXAEPIQSSDWECLK--CGKSNYKKASACDRCHALKRMTLWR 1230
            +SFF ++ A E  K  +GT HA+ G         +    WEC+K  CG+ N K+A+AC +C A+KR++ WR
Sbjct:  149 HSFFERVRAQEAAKEAVGTVHAS-GVRALNPTARVALEQWECVKRGCGEKNPKRAAACSKCGAMKRLSEWR 218
[Close]
BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A1W0AAS6_9STRA (RanBP2-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAS6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.260e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query: 1030 FFAQLHAMERKKGTIGTTHATEGXXXXXXAEPIQSSD-WECLK--CGKSNYKKASACDRCHALKRMTLWR 1230
            FF  L   E  K  +GT H T G       E +  +D WEC+K  CG SN KKA+AC +C A++R++ WR
Sbjct:   74 FFEMLKQQEAVKERVGTIH-TSGKK----TEVVTVTDNWECIKPGCGHSNMKKATACTKCGAMRRISAWR 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE5.860e-2477.33RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A5D6XEP5_9STRA1.470e-639.44RanBP2-type domain-containing protein n=1 Tax=Pyth... [more]
A0A1W0AAS6_9STRA6.260e-542.86RanBP2-type domain-containing protein n=1 Tax=Thra... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1442contigL-elsbetiae_contig1442:20290..23268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog115417.EPrPW00000020617
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger domain
EggNOG OGs1MIB9@121069,2EQC1@1,2STD6@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001430.1
Exons3
Model size1780
Cds size1140
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1442.3266.1prot_L-elsbetiae_contig1442.3266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1442 20834..23172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.6883943-UTR-L-elsbetiae_contig1442:20289..208331622815577.6883943-UTR-L-elsbetiae_contig1442:20289..20833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1442 20290..20833 -
1691682970.1152413-UTR-L-elsbetiae_contig1442:20289..208331691682970.1152413-UTR-L-elsbetiae_contig1442:20289..20833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1442 20290..20833 -
1622815577.7327163-UTR-L-elsbetiae_contig1442:23172..232681622815577.7327163-UTR-L-elsbetiae_contig1442:23172..23268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1442 23173..23268 -
1691682970.1631446-UTR-L-elsbetiae_contig1442:23172..232681691682970.1631446-UTR-L-elsbetiae_contig1442:23172..23268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1442 23173..23268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.698995-CDS-L-elsbetiae_contig1442:20833..208731622815577.698995-CDS-L-elsbetiae_contig1442:20833..20873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 20834..20873 -
1691682970.1289146-CDS-L-elsbetiae_contig1442:20833..208731691682970.1289146-CDS-L-elsbetiae_contig1442:20833..20873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 20834..20873 -
1622815577.7099054-CDS-L-elsbetiae_contig1442:21839..227991622815577.7099054-CDS-L-elsbetiae_contig1442:21839..22799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 21840..22799 -
1691682970.140032-CDS-L-elsbetiae_contig1442:21839..227991691682970.140032-CDS-L-elsbetiae_contig1442:21839..22799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 21840..22799 -
1622815577.7211704-CDS-L-elsbetiae_contig1442:23032..231721622815577.7211704-CDS-L-elsbetiae_contig1442:23032..23172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 23033..23172 -
1691682970.151413-CDS-L-elsbetiae_contig1442:23032..231721691682970.151413-CDS-L-elsbetiae_contig1442:23032..23172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1442 23033..23172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1442.3266.1

>prot_L-elsbetiae_contig1442.3266.1 ID=prot_L-elsbetiae_contig1442.3266.1|Name=mRNA_L-elsbetiae_contig1442.3266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp
MTGRRRHDTPSPPSARRGRHDTPSPPPPGDRARQQRGRHQEQHKRRRSRS
PPSLSPRRAASDSRGGDGPRGGESGGENGGGDGEGESSRRRNKKRRKEEK
KAKKREKKRAKKKKKEKAGKKTARRSSNREQSRNSSDTSSSSSSSSKSGS
SSSSSRSRSRSRSRGRPGPHVSEEEQGSGVPREARAEPAPSEQPAEGQTR
RAVGLLPSSALVDQDAPTPPASPGGRGAQTKHANANAAAAEPPAAVAGGG
GAWTAGNGRAGGGGGREDGAVDEDAPTPPASPGAGGVPLQPPVAEVPVEA
AAAAAAAGKNSFFAQLHAMERKKGTIGTTHATEGGGGGGGAEPIQSSDWE
CLKCGKSNYKKASACDRCHALKRMTLWRD*
back to top

mRNA from alignment at L-elsbetiae_contig1442:20290..23268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1442.3266.1 ID=mRNA_L-elsbetiae_contig1442.3266.1|Name=mRNA_L-elsbetiae_contig1442.3266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2979bp|location=Sequence derived from alignment at L-elsbetiae_contig1442:20290..23268- (Laminarionema elsbetiae ELsaHSoW15)
AGTAAACTAAACTTTGCAGAAAAAGTGGGTTGGTTCCACAGGCCTCGTCG
TACCGGCATACCGGCCGCCGCGGTGTAGCGCGGCGCGGTCCACGGCATGA
CGGGCAGAAGAAGGCACGACACCCCTAGCCCCCCCTCTGCGAGGAGAGGC
AGGCACGACACCCCCAGTCCGCCGCCGCCCGGCGATCGTGCGCGGCAGCA
GCGGGGCCGACACCAGGAGCAGCACAAGAGACGGAGGTAAGCAAGCTCCT
GCCCTGTCGACGTCCTCCCCACGACACCAAATGGTCGCACAGAGCGGAGA
GTATCCCATTTCACGTATTGCATGTAAATGTCTGTGTGAGCCGACCGGCC
TTGTGGCTCACGCTCGCTCTACTCCATCAATGGCTAAAATTTCAATTCGA
TGCTGCCACCCAACGGTTATTGTGATTTTCGATCTTGTATTTTGTTACGT
GCGGCGTTGCGATTTCCAGGTCTCGGTCGCCGCCGTCTCTCTCGCCTCGT
CGCGCTGCTTCCGATAGCCGCGGCGGAGACGGCCCCAGAGGCGGGGAAAG
CGGCGGGGAAAACGGCGGCGGAGACGGCGAGGGGGAATCATCAAGGCGGC
GCAACAAGAAGCGCAGGAAGGAAGAAAAGAAGGCGAAGAAAAGGGAAAAG
AAGAGGGCCAAGAAAAAGAAGAAGGAGAAGGCAGGGAAAAAGACAGCGAG
GAGAAGCAGCAACAGGGAGCAGAGCCGCAACTCCTCCGACACCAGCAGCA
GCAGCAGCAGCAGCAGCAAGAGCGGCAGCAGCAGCAGCAGCAGCAGAAGC
AGAAGCAGAAGCAGAAGCAGAGGCCGTCCCGGCCCCCACGTTTCCGAGGA
GGAGCAGGGAAGCGGCGTGCCACGGGAAGCGCGGGCGGAGCCCGCCCCGT
CGGAGCAGCCCGCGGAAGGACAGACCCGACGCGCAGTAGGGCTGCTTCCT
TCCTCGGCACTCGTCGACCAAGACGCGCCAACCCCGCCCGCAAGCCCTGG
CGGGAGGGGGGCCCAGACAAAGCACGCCAACGCCAACGCAGCAGCAGCGG
AACCCCCAGCAGCGGTCGCCGGGGGAGGAGGAGCCTGGACGGCGGGCAAC
GGCCGGGCCGGCGGCGGCGGTGGCCGGGAGGACGGTGCCGTAGACGAGGA
CGCGCCGACCCCGCCAGCTAGCCCCGGCGCCGGCGGCGTCCCGCTCCAAC
CACCGGTGGCGGAAGTGCCTGTCGAGGCGGCGGCGGCGGCGGCGGCGGCG
GGCAAGAACTCGTTCTTCGCTCAGCTCCACGCCATGGAGAGGAAGAAAGG
CACGATCGGGACGACGCACGCAACGGAAGGCGGGGGCGGCGGCGGCGGCG
CCGAGCCCATTCAGTCAAGCGATTGGGAGTGCCTGAAGTGCGGCAAGAGC
AACTACAAGAAGGCATCGGCTTGCGACAGGTATGTATGTATGTTTATTGA
TGAAAATTATGCGCGTCTCGCTGAGCTAAATTAATTTTTAGGGGGGGGTG
GGGGGTCGTTTGGCTTTGCTCCTGGCTGCGTTGCCTCTTGTCGGTCTACG
TACACGCTTTTCTGTCCTGTCGGACCAGTTGTCACGCGCTATTTACATAC
GATATTTAGTTTTCGCAGCGGCTGCTGTTTCTCTTGCCTGGTTGTTTTTG
AGATCGGCGGCGGAGCGTGTTGGGTCCCATGGATGTCGCACACACACGCA
CATGATGTATTACCATCACTCGGAGCACTACTGTGCGACGATGTTTACAC
GCAGAGAAGAGGAGCGACGCCGCGGTAAGGTATTGACCCAGAAACCGCCG
CACCTCTTCCTCTAGACTATCTATATCTGGTCGGTCTGCTTCGTGCTGTA
TGTAGTTGCATGTTTGTTTGGCTTACGGGTATATTTCGTGGGCAAACATT
CGCCGTGGGTCCGATCCGTGCGCCCCCGCCTGTCTTGCATGTTCCAGGTG
ACCTAGATGTAAGTGCCTGCATGTAGACTGATTGTCCGTGTTGTGCTCGC
CGGCTGCCCTTGATTTTACCTGGATTTTACAGACAGTAGTTGAAGCACAG
CCCGAGCTAGTTTTAACTGGAAACTTTCTTGCGAGGTGACACAATAAAGC
ACACCCTTCGGAACGAATTTTAGAGCTCGATTACTCCGTAACGAAAAACG
TGCCAGCGCCAAATGACACATTTTCGGACAGCCCTCGACTAGATATTTCC
AACGCCACCCCCTTTGGCACTGGCACTCTTCTTGCTGGGGAGGAATCGAG
CTTCAATTATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGCTATC
TTAGCCTGACCCTCCTTCCCCTTTTGCCCTCACGGGTGCGCACCCTGCTG
GACCTGGACTAACCGCCCCCCCCCCTGTGTCTGGCGTTGCTTCAGGTGCC
ACGCACTGAAACGCATGACCCTTTGGCGAGACTAGGCAAGACGAGGCTGG
CGTTGGAGGCCGCTGTCGGCCCCGGACGCCCTAGGGATGATTTTCGCCGG
AATCCGTGTGGGAAAGAAAGTGAAAACGCGGCCGGTGCTCTGGTTTTGAG
CACAGAAAAAACTTGTTTTTATGTTTTGTTTTTCTTCATGTTTATTTCCG
GTGCTTGTCACGAGGACATCTTACCAGAGTACAATATTGTAGGAGGTATA
TACATAGTGGAGGAGAAATCCAAGCTCAAGTCAATATATAAGAACTTGCC
CACATTTGAGATACCCACGGATAGGAATCTTGGAATCTTCGATAAAGATG
GCAACGTAGAAGCAAATTGGTAATTGGTTTCCCCACAGGAATAAGAACCT
TAGCCTCGCTCATAAAGTAGTGGCGCGTTAGCAGTTTTTGGGGGTTGGTC
TTATCCGCACGCGGAATGCACCCACCCCTGGGAAGGCTCTGTTCCTCTAG
CCCCTCTCGCAGGGATCTGATAGATTCGTTTGAAGGCGAAAGTGCAAGGC
AAATGTGGGTACAGAGCCCGAGATCGGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1442:20290..23268-

>mRNA_L-elsbetiae_contig1442.3266.1 ID=mRNA_L-elsbetiae_contig1442.3266.1|Name=mRNA_L-elsbetiae_contig1442.3266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2280bp|location=Sequence derived from alignment at L-elsbetiae_contig1442:20290..23268- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGGCAGAAGAAGGCACGACACCCCTAGCCCCCCCTCTGCGAGGAG
AGGCAGGCACGACACCCCCAGTCCGCCGCCGCCCGGCGATCGTGCGCGGC
AGCAGCGGGGCCGACACCAGGAGCAGCACAAGAGACGGAGATGACGGGCA
GAAGAAGGCACGACACCCCTAGCCCCCCCTCTGCGAGGAGAGGCAGGCAC
GACACCCCCAGTCCGCCGCCGCCCGGCGATCGTGCGCGGCAGCAGCGGGG
CCGACACCAGGAGCAGCACAAGAGACGGAGGTCTCGGTCGCCGCCGTCTC
TCTCGCCTCGTCGCGCTGCTTCCGATAGCCGCGGCGGAGACGGCCCCAGA
GGCGGGGAAAGCGGCGGGGAAAACGGCGGCGGAGACGGCGAGGGGGAATC
ATCAAGGCGGCGCAACAAGAAGCGCAGGAAGGAAGAAAAGAAGGCGAAGA
AAAGGGAAAAGAAGAGGGCCAAGAAAAAGAAGAAGGAGAAGGCAGGGAAA
AAGACAGCGAGGAGAAGCAGCAACAGGGAGCAGAGCCGCAACTCCTCCGA
CACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCGGCAGCAGCAGCAGCA
GCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGGCCGTCCCGGCCCCCAC
GTTTCCGAGGAGGAGCAGGGAAGCGGCGTGCCACGGGAAGCGCGGGCGGA
GCCCGCCCCGTCGGAGCAGCCCGCGGAAGGACAGACCCGACGCGCAGTAG
GGCTGCTTCCTTCCTCGGCACTCGTCGACCAAGACGCGCCAACCCCGCCC
GCAAGCCCTGGCGGGAGGGGGGCCCAGACAAAGCACGCCAACGCCAACGC
AGCAGCAGCGGAACCCCCAGCAGCGGTCGCCGGGGGAGGAGGAGCCTGGA
CGGCGGGCAACGGCCGGGCCGGCGGCGGCGGTGGCCGGGAGGACGGTGCC
GTAGACGAGGACGCGCCGACCCCGCCAGCTAGCCCCGGCGCCGGCGGCGT
CCCGCTCCAACCACCGGTGGCGGAAGTGCCTGTCGAGGCGGCGGCGGCGG
CGGCGGCGGCGGGCAAGAACTCGTTCTTCGCTCAGCTCCACGCCATGGAG
AGGAAGAAAGGCACGATCGGGACGACGCACGCAACGGAAGGCGGGGGCGG
CGGCGGCGGCGCCGAGCCCATTCAGTCAAGCGATTGGGAGTGCCTGAAGT
GCGGCAAGAGCAACTACAAGAAGGCATCGGCTTGCGACAGGTCTCGGTCG
CCGCCGTCTCTCTCGCCTCGTCGCGCTGCTTCCGATAGCCGCGGCGGAGA
CGGCCCCAGAGGCGGGGAAAGCGGCGGGGAAAACGGCGGCGGAGACGGCG
AGGGGGAATCATCAAGGCGGCGCAACAAGAAGCGCAGGAAGGAAGAAAAG
AAGGCGAAGAAAAGGGAAAAGAAGAGGGCCAAGAAAAAGAAGAAGGAGAA
GGCAGGGAAAAAGACAGCGAGGAGAAGCAGCAACAGGGAGCAGAGCCGCA
ACTCCTCCGACACCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCGGCAGC
AGCAGCAGCAGCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGGCCGTCC
CGGCCCCCACGTTTCCGAGGAGGAGCAGGGAAGCGGCGTGCCACGGGAAG
CGCGGGCGGAGCCCGCCCCGTCGGAGCAGCCCGCGGAAGGACAGACCCGA
CGCGCAGTAGGGCTGCTTCCTTCCTCGGCACTCGTCGACCAAGACGCGCC
AACCCCGCCCGCAAGCCCTGGCGGGAGGGGGGCCCAGACAAAGCACGCCA
ACGCCAACGCAGCAGCAGCGGAACCCCCAGCAGCGGTCGCCGGGGGAGGA
GGAGCCTGGACGGCGGGCAACGGCCGGGCCGGCGGCGGCGGTGGCCGGGA
GGACGGTGCCGTAGACGAGGACGCGCCGACCCCGCCAGCTAGCCCCGGCG
CCGGCGGCGTCCCGCTCCAACCACCGGTGGCGGAAGTGCCTGTCGAGGCG
GCGGCGGCGGCGGCGGCGGCGGGCAAGAACTCGTTCTTCGCTCAGCTCCA
CGCCATGGAGAGGAAGAAAGGCACGATCGGGACGACGCACGCAACGGAAG
GCGGGGGCGGCGGCGGCGGCGCCGAGCCCATTCAGTCAAGCGATTGGGAG
TGCCTGAAGTGCGGCAAGAGCAACTACAAGAAGGCATCGGCTTGCGACAG
GTGCCACGCACTGAAACGCATGACCCTTTGGCGAGACTAGGTGCCACGCA
CTGAAACGCATGACCCTTTGGCGAGACTAG
back to top