mRNA_L-elsbetiae_contig1441.3259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1441.3259.1
Unique NamemRNA_L-elsbetiae_contig1441.3259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1441.3259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1441contigL-elsbetiae_contig1441:10426..11483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1058
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1441.3259.1prot_L-elsbetiae_contig1441.3259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1441 10475..11149 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.186192-UTR-L-elsbetiae_contig1441:10425..104741622815577.186192-UTR-L-elsbetiae_contig1441:10425..10474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1441 10426..10474 +
1691682969.7843025-UTR-L-elsbetiae_contig1441:10425..104741691682969.7843025-UTR-L-elsbetiae_contig1441:10425..10474Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1441 10426..10474 +
1622815577.2114155-UTR-L-elsbetiae_contig1441:11149..114831622815577.2114155-UTR-L-elsbetiae_contig1441:11149..11483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1441 11150..11483 +
1691682969.80698-UTR-L-elsbetiae_contig1441:11149..114831691682969.80698-UTR-L-elsbetiae_contig1441:11149..11483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1441 11150..11483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.1978383-CDS-L-elsbetiae_contig1441:10474..111491622815577.1978383-CDS-L-elsbetiae_contig1441:10474..11149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1441 10475..11149 +
1691682969.7967374-CDS-L-elsbetiae_contig1441:10474..111491691682969.7967374-CDS-L-elsbetiae_contig1441:10474..11149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1441 10475..11149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1441.3259.1

>prot_L-elsbetiae_contig1441.3259.1 ID=prot_L-elsbetiae_contig1441.3259.1|Name=mRNA_L-elsbetiae_contig1441.3259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
MCIRDDTRGSPGPVKITDDTPRRFQGSPQRWQRERNTRERENELVPTRPP
GRAHPLNGKSACVSRASFAAGKTLAAGGPRCGGENVPVEFHGHIVVSPGS
CRTAEGDGSDSGHGGFVSGGGGRHQSSPAPERRSTNSAVKAALRRSSCPW
SGSSPNQLPTIVDTGSLELDDSASVWAVEKAGLLRQRDTNARLCTKGRPQ
YRCKGGVEVCGRLRSHVATKNNVG*
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mRNA from alignment at L-elsbetiae_contig1441:10426..11483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1441.3259.1 ID=mRNA_L-elsbetiae_contig1441.3259.1|Name=mRNA_L-elsbetiae_contig1441.3259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1058bp|location=Sequence derived from alignment at L-elsbetiae_contig1441:10426..11483+ (Laminarionema elsbetiae ELsaHSoW15)
TTTGGTTGGCGGTTCGGCATCAAAACTTGTCGTTAGTCGCGGCCGTACGA
TGTGCATTCGTGATGATACCAGAGGTAGCCCGGGCCCCGTCAAAATCACC
GACGATACACCCCGCCGCTTTCAAGGAAGTCCCCAGCGTTGGCAGCGAGA
GAGAAACACACGCGAGCGGGAAAACGAGCTAGTGCCCACCCGGCCCCCGG
GAAGGGCTCACCCGCTCAACGGCAAGAGCGCATGTGTATCGAGAGCGTCT
TTCGCGGCAGGAAAAACTTTGGCGGCCGGTGGGCCTCGATGTGGCGGCGA
GAACGTGCCTGTCGAATTTCACGGTCACATCGTCGTTTCTCCCGGCTCTT
GTCGGACCGCTGAAGGTGACGGCAGTGACTCTGGCCATGGTGGTTTTGTC
TCAGGCGGTGGCGGGCGGCACCAGTCCTCACCAGCCCCGGAGAGGAGGAG
CACCAACAGCGCCGTCAAAGCAGCCCTCCGTCGATCAAGTTGCCCCTGGT
CGGGTTCGTCGCCAAACCAACTCCCGACTATCGTTGATACCGGTTCTCTT
GAGCTTGACGATTCGGCATCAGTTTGGGCGGTAGAAAAAGCAGGGCTCCT
CCGCCAAAGAGACACAAACGCGCGCCTTTGCACAAAGGGACGCCCCCAAT
ATCGATGCAAAGGGGGTGTGGAGGTTTGTGGAAGGCTGAGGTCGCACGTG
GCGACGAAGAACAACGTTGGGTAAACGGAGAACGGTACCATACCACAGGA
CACCCGGATAAAGCCGAAAGTCATTTATCGAGTGGGTTGAGTGCCGTTCG
ATCAACCATGTCATTATTCATTGCCTTGTGCGTTCGTCGTAGCGTATGTG
TATTCGTCAAAACCTTGTTGAAGTGTAAATGAACTACTGGTGCTATATAG
ATGGAGACTAGATATACGTTTGATGAAAATTATCGTAAGGCCGCTCGTTG
AGCTGGAGTGGGAACGCTTGGTAGACGTGATCCGCTGCCCCTCTTGAACC
CTGGGTTGTTTTGTTGGCGGCTTGTCCCCCCTTCCCGCCCCCCCCCCCTT
TTCTCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1441:10426..11483+

>mRNA_L-elsbetiae_contig1441.3259.1 ID=mRNA_L-elsbetiae_contig1441.3259.1|Name=mRNA_L-elsbetiae_contig1441.3259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig1441:10426..11483+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCATTCGTGATGATACCAGAGGTAGCCCGGGCCCCGTCAAAATCAC
CGACGATACACCCCGCCGCTTTCAAGGAAGTCCCCAGCGTTGGCAGCGAG
AGAGAAACACACGCGAGCGGGAAAACGAGCTAGTGCCCACCCGGCCCCCG
GGAAGGGCTCACCCGCTCAACGGCAAGAGCGCATGTGTATCGAGAGCGTC
TTTCGCGGCAGGAAAAACTTTGGCGGCCGGTGGGCCTCGATGTGGCGGCG
AGAACGTGCCTGTCGAATTTCACGGTCACATCGTCGTTTCTCCCGGCTCT
TGTCGGACCGCTGAAGGTGACGGCAGTGACTCTGGCCATGGTGGTTTTGT
CTCAGGCGGTGGCGGGCGGCACCAGTCCTCACCAGCCCCGGAGAGGAGGA
GCACCAACAGCGCCGTCAAAGCAGCCCTCCGTCGATCAAGTTGCCCCTGG
TCGGGTTCGTCGCCAAACCAACTCCCGACTATCGTTGATACCGGTTCTCT
TGAGCTTGACGATTCGGCATCAGTTTGGGCGGTAGAAAAAGCAGGGCTCC
TCCGCCAAAGAGACACAAACGCGCGCCTTTGCACAAAGGGACGCCCCCAA
TATCGATGCAAAGGGGGTGTGGAGGTTTGTGGAAGGCTGAGGTCGCACGT
GGCGACGAAGAACAACGTTGGGTAAATGTGCATTCGTGATGATACCAGAG
GTAGCCCGGGCCCCGTCAAAATCACCGACGATACACCCCGCCGCTTTCAA
GGAAGTCCCCAGCGTTGGCAGCGAGAGAGAAACACACGCGAGCGGGAAAA
CGAGCTAGTGCCCACCCGGCCCCCGGGAAGGGCTCACCCGCTCAACGGCA
AGAGCGCATGTGTATCGAGAGCGTCTTTCGCGGCAGGAAAAACTTTGGCG
GCCGGTGGGCCTCGATGTGGCGGCGAGAACGTGCCTGTCGAATTTCACGG
TCACATCGTCGTTTCTCCCGGCTCTTGTCGGACCGCTGAAGGTGACGGCA
GTGACTCTGGCCATGGTGGTTTTGTCTCAGGCGGTGGCGGGCGGCACCAG
TCCTCACCAGCCCCGGAGAGGAGGAGCACCAACAGCGCCGTCAAAGCAGC
CCTCCGTCGATCAAGTTGCCCCTGGTCGGGTTCGTCGCCAAACCAACTCC
CGACTATCGTTGATACCGGTTCTCTTGAGCTTGACGATTCGGCATCAGTT
TGGGCGGTAGAAAAAGCAGGGCTCCTCCGCCAAAGAGACACAAACGCGCG
CCTTTGCACAAAGGGACGCCCCCAATATCGATGCAAAGGGGGTGTGGAGG
TTTGTGGAAGGCTGAGGTCGCACGTGGCGACGAAGAACAACGTTGGGTAA
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