mRNA_L-elsbetiae_contig14409.3255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14409.3255.1
Unique NamemRNA_L-elsbetiae_contig14409.3255.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14409.3255.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 2.290e-70
Identity = 132/199 (66.33%), Postives = 145/199 (72.86%), Query Frame = 1 
Query:    7 TEWRARFWRERSHRRRGARDCAVRALLAAAEGEYGAPAWGPEEDPLEGVRLTAVWKGLGGDRPLPHASLELPLEMSAXXXXXXXXXXXEGAVEWNASVSWEVCTSNITGSLGLKLRLLLAAYVHCLALGGDLLMADVCGADAEAELSSARERARHIGAVLGPGTRELVARTTTAPQ---AEGGGGGDEDRAGDSRILTH 594
            TEWRA F RERSH  RG R+CAVR LLA+A GE+G PAWGPE DPL+GVRL+AVW+GLGGDRPLPHA LEL  +  +               +W ASVSWE  TS   GSLGLKLRLLLA YVHCLALGGDLLMAD+C ADAEAELSSARERARHIGAVLGP TREL+AR TTAP+    E G G D D   D   + H
Sbjct:  332 TEWRAGFLRERSHLCRGTRECAVRTLLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGS------SSLSQWEASVSWET-TSLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPRRGDGESGDGTDGDDRADPADIVH 523
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BLAST of mRNA_L-elsbetiae_contig14409.3255.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.990e-68
Identity = 129/198 (65.15%), Postives = 143/198 (72.22%), Query Frame = 1 
Query:   10 EWRARFWRERSHRRRGARDCAVRALLAAAEGEYGAPAWGPEEDPLEGVRLTAVWKGLGGDRPLPHASLELPLEMSAXXXXXXXXXXXEGAVEWNASVSWEVCTSNITGSLGLKLRLLLAAYVHCLALGGDLLMADVCGADAEAELSSARERARHIGAVLGPGTRELVARTTTAP---QAEGGGGGDEDRAGDSRILTH 594
            EWRA F RERSH  RG R+CAVRALLA+A GE+G PAWGPE DPL+GVRL+AVW+GLGGDRPLPH  LEL  +  +               +W ASVSWE  + +  GSLGLKLRLLLA YVHCLALGGDLLMAD+C ADAEAELSSARERARHIGAVLGP TREL+AR TTAP     E GGG   D   D   + H
Sbjct:  332 EWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHTPLELLRDNLSPPGGG------SSLSQWEASVSWETASLS-AGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDGESGGGTHGDDRADPADIVH 522
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14409.3255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI2.290e-7066.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE1.990e-6865.15Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14409contigL-elsbetiae_contig14409:410..4093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab3 GTPase-activating protein catalytic subunit
Ec32 orthologEc-28_002310.1
Exons4
Model size594
Cds size594
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14409.3255.1prot_L-elsbetiae_contig14409.3255.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14409 410..4093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.9717462-CDS-L-elsbetiae_contig14409:409..5441622815576.9717462-CDS-L-elsbetiae_contig14409:409..544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 410..544 +
1691682969.6907244-CDS-L-elsbetiae_contig14409:409..5441691682969.6907244-CDS-L-elsbetiae_contig14409:409..544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 410..544 +
1622815576.9879775-CDS-L-elsbetiae_contig14409:2277..24571622815576.9879775-CDS-L-elsbetiae_contig14409:2277..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 2278..2457 +
1691682969.7026231-CDS-L-elsbetiae_contig14409:2277..24571691682969.7026231-CDS-L-elsbetiae_contig14409:2277..2457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 2278..2457 +
1622815577.0000904-CDS-L-elsbetiae_contig14409:3086..32061622815577.0000904-CDS-L-elsbetiae_contig14409:3086..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 3087..3206 +
1691682969.713395-CDS-L-elsbetiae_contig14409:3086..32061691682969.713395-CDS-L-elsbetiae_contig14409:3086..3206Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 3087..3206 +
1622815577.0147007-CDS-L-elsbetiae_contig14409:3934..40931622815577.0147007-CDS-L-elsbetiae_contig14409:3934..4093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 3935..4093 +
1691682969.7243185-CDS-L-elsbetiae_contig14409:3934..40931691682969.7243185-CDS-L-elsbetiae_contig14409:3934..4093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14409 3935..4093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14409.3255.1

>prot_L-elsbetiae_contig14409.3255.1 ID=prot_L-elsbetiae_contig14409.3255.1|Name=mRNA_L-elsbetiae_contig14409.3255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
QKTEWRARFWRERSHRRRGARDCAVRALLAAAEGEYGAPAWGPEEDPLEG
VRLTAVWKGLGGDRPLPHASLELPLEMSAGGGGGGGGGGGEGAVEWNASV
SWEVCTSNITGSLGLKLRLLLAAYVHCLALGGDLLMADVCGADAEAELSS
ARERARHIGAVLGPGTRELVARTTTAPQAEGGGGGDEDRAGDSRILTH
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mRNA from alignment at L-elsbetiae_contig14409:410..4093+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14409.3255.1 ID=mRNA_L-elsbetiae_contig14409.3255.1|Name=mRNA_L-elsbetiae_contig14409.3255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3684bp|location=Sequence derived from alignment at L-elsbetiae_contig14409:410..4093+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAAGACCGAGTGGAGGGCCCGGTTCTGGCGGGAGCGATCGCACCGCCG
ACGGGGGGCCCGAGACTGCGCCGTTCGCGCACTGCTGGCGGCGGCGGAGG
GGGAGTACGGAGCGCCCGCCTGGGGGCCGGAGGAGGTAAGCCACTGCTGC
TGACTGTGGAGGGCTGGTATGCACGGCTACAGCCAAAACCACGGAGCCCC
CAATGTCTGAAAAAGGAGAGGCCCTGTTCAGTGTTGGTTTGATTAGATTT
TAGCACTTCCTGCAAGCTGAGATGTCGGCTTCTTTGTGCGTGGGTGTGCT
GAGGCCCTGTGCCTTTCGGCCGTAACGGAACGCGCCTCCTTAAAAATCAC
CCGCACATGTGCCCCCCTTACACCGGTTTTTATGGGAGCAGAAAGTTTAT
TTCGAGAAAAGTCGCTTTTTTCGCATTGTTGTGGCACTTTTCACCGCCCA
AGAGCTCGGAATCGTGCCTGCGCACCTCGAGAACAATTGAAGCTCTCGTC
CAGAGGTTTCTAGATCTCCTGCCCGTTCTGGCAGACTTGAAGTTTGATTT
TTCGTCGAGGAGCAAGAGAGGCAACATTTTGACAACTTTTCGCCAGAAAA
GCATTTTCGGGCAAACTTTTGCACGAACAGGCTATTTTGTTGCAACGTTG
GCACAATGTTGCGATATCTTGCTCCTTGACAAAAATCAAACGTGAAGTCT
GCCAGAATGCGCAGGAGATCTAGAAAACTCTAGACGAGAGCTTCAATTGT
TCTCGAGGTGCGCAGGCACGATTCCGAGCTCTTGGCGATGAAAAGTGCCC
AACAATGCGACAAAAGCAACTTTTCTCGAAATAAACTTTCTGCTCCCATA
AAAACCGGTCTTAATTTTTTTTTGTCAAAGTTACACAACTGTGTTGGAGC
CTTCTCCTTCGAGCTTCCCTTTACAGGCGGATTAAAACACAAGAGGAAGA
TAATTCACGACCATCCCGCCCGCTCTTATACTCTTTACACTAGATATTGG
TATTTGTAAGTTTCAGAAAAGTCATCACATGTTAGCTGGTATTACATGAA
TGTGTGTAGCTGGTGGCTGGTATTTAGTATTTAGCCTGCTGGTTAGGGGC
CCCGCTTGCTGCTTGATTCTGAGTGTGGGTGCGTCGGTGTCTCGTTCCTC
CTTCGCGCCCCCTTTTTTTATGGCTTTTGCCTTTTTCTGGGGGGGGGGGG
CTGCTGTGCGTGTGTGTAGATACGCACGTGCTTCGTACTCGGAGTATATA
TTTATCTATGTATTTCGTTGCTGAATACGGCGTGGTATAGCAGCGCTTTT
ACCCTCTGGCGGCCGGCTTCCTGTTTAAGCTGTGCCTTGTCGTCGAGGCA
AAGTACAAAGTACGAGGGGGTGTGGTACTGGCGTGTTGGGCACACACCGA
TGGACAGATAGAAGAGAGGAAGAGAGGGAGGGAGGGAGGAAGGGAGGGAG
AGGTAGCGATCTGTTGTAAGGTTGAAGAGGGTTCATTTTTCCCTACACTA
TGGTAGAGATACCTGTGTGTGATGTGTATTTACGTAGAGGTGCTTTGCTT
TTTACGAGAAGGGGGGAAGAAGCTTTCAGGACACGCGGACGGTGTTGAGA
TGTTGGGAACCACACGCAGATTTAGTTTGGCCGAGAGGGGATGTCCAGGA
GGATGGATGGGGGGGGGGGGGGGTCCTACTTCCTACCGCGGCACCTCCTC
AACAATAGATCATGAATACGGACGGTAGATCTCTCGGCTCGTGCCGACCG
AACCCTTCCCTCTCCCCGTCTCTAACCCCCGTTTTTCCTCCCCCCCCGTC
CCCCGTCCCCCCCCGTCCCTCCCTATGTCCCATCGTTCTACCCCCTCTGT
CTCTGCCTCCGACAAAAGGACCCGCTTGAGGGAGTCCGATTGACTGCGGT
GTGGAAAGGCCTCGGCGGGGACCGCCCTCTCCCGCACGCCTCCTTGGAAC
TCCCCTTGGAAATGTCCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGAGGGCGCCGTGGAGTGGAATGCCTCTGTGTCGTGGGAGGTGTGTGT
GTAGTACCTGCCCCCCCCCTGCTGAGACTCGCGTGTCTTGTTGGTCAGCG
TGTCGGTGATGTCTACGCCAACAGGAGTCAGTCCTCGCACACACGAAGTA
TTGCAGGTCTCGCGTGTGCGTGCTTGCTGTTTAGCTCTGTTGTGTGTGTG
TGTGTGTGTGTGTGTTTTTTCTTCTCTCGACTCGCTCTTTGGTGCGCGAG
GTGTTATGCAGCTCATACCTTCTTGGCTCGTACAGCAGTACTGCTGTAGT
CAACCGAAAAACCGAAAGCGATGGGTGAGCAAGGTATGGGAATCGCCAGC
CTCCGCAACAACAGCAGTAACAACAACGCAACGACCACAGCAGCACCACC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGC
CACCAACGAAAACAACACCCAAGACAACCAAAACAGCAACAACAAATGTA
CCAAGCGCGCCTCCTCAGCAAAACAAAATAACACAACAACAGCAGTAACG
ACAGCACCACCAACAAAAACAGCACCAAAAACAACACTAAAAACAACCAC
CACCACAACAACAACAATAACAACAACAAACTTCTTGTGTACCAACCTCG
CCGCTCCTCCGCCTCATATCCGTCCAGACGTCAAACATCACCGGGTCCTT
GGGCTTGAAGCTCCGGCTACTCCTGGCCGCCTACGTGCACTGCCTTGCGC
TGGGGGGCGATCTACTCATGGCCGACGTTTGCGGGGCCGACGCTGAGGTT
TGTTCCCTGCTGTCGTTGTTGTTGACAGTCTCGCTGACAGTCCCGCTGAC
AGTCCCGTTGTTGTTGTTTAGTCGCAGGTTGTTGTTGTTGACAGTCCCGT
TGTTGTTGTTTTATTGCAGTTTTGTTGCTCTTGACAAGTCCCGTTGTTGT
TGTCGGTGTCGTCGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TTATTCATCTCCGTGCCTCATTCACTTGTCTTGGCTTCCGGTTTGTTGAT
TAGCATATCCTACATACAAGAAGCTGTTGTTGTAGTAGAGCCGCGTGGTG
GACGGCCGGTCCTGCTCGGAGGCTCCCTCTCGGTGCCGTTTGCTGGCACG
ATCCGTTAAAGATTTGTTCCGTACCCATTCTTTATCCCTCTCCTCCTCCT
CCTCCTTATATGTCCTGCTCCCTCCCTCTATCTTCCCATCTCCCTCTTTG
TTACTTCGTTTGCCCTCGGACAAATAATTCCTGCAATAAAACAACAACAA
CGGGACTGTCAGCGGGACTGCCAGCGGGACTGTCAGCGGGACTGTCAGCA
ACAACAACAACAACAACAACAAAGCAGCTTATATGTACATATGTACCCTA
CGTGCGTACAAACGTACAAGATAACAAACTCGCTCATCGAAAAATACCCA
CGTACGTACACACATACATACATGTATTGTACCTTCTTTTCCTTTCCGTT
CAATAATGGTCATTCCGTGTCTCAGGCGGAGCTTTCGTCCGCGAGGGAGA
GGGCGAGGCACATCGGCGCGGTGCTCGGCCCGGGCACGAGAGAGCTCGTC
GCCAGAACAACGACGGCGCCGCAGGCCGAAGGGGGCGGCGGCGGCGACGA
AGACCGGGCAGGTGACAGTAGAATACTTACACAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14409:410..4093+

>mRNA_L-elsbetiae_contig14409.3255.1 ID=mRNA_L-elsbetiae_contig14409.3255.1|Name=mRNA_L-elsbetiae_contig14409.3255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig14409:410..4093+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAAGACCGAGTGGAGGGCCCGGTTCTGGCGGGAGCGATCGCACCGCCG
ACGGGGGGCCCGAGACTGCGCCGTTCGCGCACTGCTGGCGGCGGCGGAGG
GGGAGTACGGAGCGCCCGCCTGGGGGCCGGAGGAGCAAAAGACCGAGTGG
AGGGCCCGGTTCTGGCGGGAGCGATCGCACCGCCGACGGGGGGCCCGAGA
CTGCGCCGTTCGCGCACTGCTGGCGGCGGCGGAGGGGGAGTACGGAGCGC
CCGCCTGGGGGCCGGAGGAGGACCCGCTTGAGGGAGTCCGATTGACTGCG
GTGTGGAAAGGCCTCGGCGGGGACCGCCCTCTCCCGCACGCCTCCTTGGA
ACTCCCCTTGGAAATGTCCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGAGGGCGCCGTGGAGTGGAATGCCTCTGTGTCGTGGGAGGTGTGT
GACCCGCTTGAGGGAGTCCGATTGACTGCGGTGTGGAAAGGCCTCGGCGG
GGACCGCCCTCTCCCGCACGCCTCCTTGGAACTCCCCTTGGAAATGTCCG
CAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGCGCCGTGGAG
TGGAATGCCTCTGTGTCGTGGGAGGTGTGTACGTCAAACATCACCGGGTC
CTTGGGCTTGAAGCTCCGGCTACTCCTGGCCGCCTACGTGCACTGCCTTG
CGCTGGGGGGCGATCTACTCATGGCCGACGTTTGCGGGGCCGACGCTGAG
ACGTCAAACATCACCGGGTCCTTGGGCTTGAAGCTCCGGCTACTCCTGGC
CGCCTACGTGCACTGCCTTGCGCTGGGGGGCGATCTACTCATGGCCGACG
TTTGCGGGGCCGACGCTGAGGCGGAGCTTTCGTCCGCGAGGGAGAGGGCG
AGGCACATCGGCGCGGTGCTCGGCCCGGGCACGAGAGAGCTCGTCGCCAG
AACAACGACGGCGCCGCAGGCCGAAGGGGGCGGCGGCGGCGACGAAGACC
GGGCAGGTGACAGTAGAATACTTACACATGCGGAGCTTTCGTCCGCGAGG
GAGAGGGCGAGGCACATCGGCGCGGTGCTCGGCCCGGGCACGAGAGAGCT
CGTCGCCAGAACAACGACGGCGCCGCAGGCCGAAGGGGGCGGCGGCGGCG
ACGAAGACCGGGCAGGTGACAGTAGAATACTTACACAT
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