mRNA_L-elsbetiae_contig144.3248.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig144.3248.1
Unique NamemRNA_L-elsbetiae_contig144.3248.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Match: D8LFQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 6.340e-57
Identity = 125/294 (42.52%), Postives = 159/294 (54.08%), Query Frame = 1 
Query:    1 MSVPRILVASLVSCLALTYT-GGSAQTLPADAAK---MASPKFLYSIDVLLDESTSPVILGIRHGQTVAQAAVGFCREQGLDGAMKSKLIPQLVKILEDGIDGALGPNTPVRDDALSPALSVEHADPDGGSESIYDLTLDDPVLTLGVSLGGEDERMLYYYAGQDVADVAMAFCTENLVSSASAEELTRCSDALSAHLTENISTANTVVTDKNRSEQXXXXXXXXQVKQGETQEPKVSYSATKPLVTVPLNINGRETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV 870
            MS  R+LVASLVSCL +TY  GG++QT P+DAA    +AS  FL+S+DV+LDES   V LGIR GQTVA+AA+GFC EQGLDGAM+S L+PQL+K+LEDGI   +GP  PV D+A  P+   E    D   +   D  L DPVLTLG+S+ G +ER L+YY GQ +                                                                              L+TVPLN+NG ET LQIF+ S+A +LA++FC REE GLE S ++SC SQ+
Sbjct:    1 MSALRVLVASLVSCLTITYIIGGNSQTWPSDAAAATAIASSDFLFSVDVVLDESAVAVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGITEVVGPPFPVGDEASIPSSDAERVASDAQRDVPDDSKLADPVLTLGISIDGNEERPLFYYTGQGL------------------------------------------------------------------------------LMTVPLNVNGVETVLQIFRDSNAKDLASDFCRREEFGLEGSFLESCSSQM 216
[Close]
BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Match: A0A6H5KRC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-8
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:  724 VTVPLNINGRETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV 870
            +TVPLN+NG ET LQIF+GS+A ELA++FC R E  LE S ++SC SQ+
Sbjct:    1 MTVPLNVNGVETVLQIFRGSNAKELASDFCRRAEFRLEGSFLESCCSQM 49
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFQ8_ECTSI6.340e-5742.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRC8_9PHAE3.460e-861.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig144contigL-elsbetiae_contig144:50761..54365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_001260.1
Exons4
Model size870
Cds size870
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig144.3248.1prot_L-elsbetiae_contig144.3248.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig144 50761..54365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.4699733-CDS-L-elsbetiae_contig144:50760..509581622815576.4699733-CDS-L-elsbetiae_contig144:50760..50958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 50761..50958 +
1691682969.3927522-CDS-L-elsbetiae_contig144:50760..509581691682969.3927522-CDS-L-elsbetiae_contig144:50760..50958Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 50761..50958 +
1622815576.4822478-CDS-L-elsbetiae_contig144:51143..512181622815576.4822478-CDS-L-elsbetiae_contig144:51143..51218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 51144..51218 +
1691682969.4022543-CDS-L-elsbetiae_contig144:51143..512181691682969.4022543-CDS-L-elsbetiae_contig144:51143..51218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 51144..51218 +
1622815576.4988034-CDS-L-elsbetiae_contig144:52906..531131622815576.4988034-CDS-L-elsbetiae_contig144:52906..53113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 52907..53113 +
1691682969.4119148-CDS-L-elsbetiae_contig144:52906..531131691682969.4119148-CDS-L-elsbetiae_contig144:52906..53113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 52907..53113 +
1622815576.5122352-CDS-L-elsbetiae_contig144:53975..543651622815576.5122352-CDS-L-elsbetiae_contig144:53975..54365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 53976..54365 +
1691682969.420431-CDS-L-elsbetiae_contig144:53975..543651691682969.420431-CDS-L-elsbetiae_contig144:53975..54365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 53976..54365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig144.3248.1

>prot_L-elsbetiae_contig144.3248.1 ID=prot_L-elsbetiae_contig144.3248.1|Name=mRNA_L-elsbetiae_contig144.3248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
MSVPRILVASLVSCLALTYTGGSAQTLPADAAKMASPKFLYSIDVLLDES
TSPVILGIRHGQTVAQAAVGFCREQGLDGAMKSKLIPQLVKILEDGIDGA
LGPNTPVRDDALSPALSVEHADPDGGSESIYDLTLDDPVLTLGVSLGGED
ERMLYYYAGQDVADVAMAFCTENLVSSASAEELTRCSDALSAHLTENIST
ANTVVTDKNRSEQQQQQQDEQQVKQGETQEPKVSYSATKPLVTVPLNING
RETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV
back to top

mRNA from alignment at L-elsbetiae_contig144:50761..54365+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig144.3248.1 ID=mRNA_L-elsbetiae_contig144.3248.1|Name=mRNA_L-elsbetiae_contig144.3248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3605bp|location=Sequence derived from alignment at L-elsbetiae_contig144:50761..54365+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGTGCCACGAATACTTGTGGCCAGCTTAGTGTCGTGTCTCGCGCT
TACATACACTGGCGGAAGTGCTCAGACCTTGCCAGCGGATGCTGCGAAGA
TGGCATCTCCCAAATTCCTTTACTCAATCGATGTTTTGCTGGACGAATCC
ACGTCTCCGGTGATTCTGGGCATCCGCCATGGGCAAACCGTTGCTCAGGT
ACGCCTCAGGATTTTCCTCGGAAGGAGGGAGCTGCCATGTAGGCGTTTGC
GGTAGCGATGCTCTTGCCGTCCGTGTCCCGTCTCCGTACTTGTACGCGTG
CTACATAAATACTCCTAAAATATGTTGTGGATACAAATCGAGACAATCCC
CTCCGTCGTTTCTCCTTTTTTTCGTGCACACAGGCTGCAGTGGGATTCTG
TCGCGAGCAAGGCTTGGATGGAGCGATGAAAAGTAAGCTGATTCCGCAGC
TTGTCAAGGTAAGTTTATGAGCAGTGTTTATATTCTGGTTTTGTACCTTC
TTAGGGTCGTCCTCAACGACAGGGCTCTGTTGCTTGCTTTTCTTGCTTTT
CTCGGATTAACAACAAGATATTGGAGCTCGTCATTCCTGACGTTCCTCAA
GGAACTTCCGGTATTTTTGCAGGTCACCGAACGCTTCAGTTCAGTTTTTT
GGGTGTGCGGCCAACAAGGCACAGAACTCAATTTTTGTGGGTCGCCTACA
TAGGCGTGTGTATGGACTCACGCCGTTGAGTGCTGTTTGTGGATATCATC
AGCCTGAGGGCTCTCTCTAGCATGCACTTTGACTCGTCACACCGGAGCAA
CGGCAGAAAAATGAAAAACTCCGAAAAGCCAACATCACATCGCACTTCAA
TTCACCTTCGCGGGCCATGCGAACTCAAAACTGGGCAAACGGTCCTGATT
TTGGGTTCGCCAAATGACTGCTGTATACTGATACCGTTGGCCTGAGGTCT
CTCTCTGGCGTACGTTGTTGACTGGTTACATGCGGATATACAAAAAAAAT
GGAAAAGCGGAAAAAATGGCAACATTGAAACACACTTCAATTCACACTCG
CGGCCAGTGCGCACTCAAAACTGGACAACACACCCTGTTTCCTGGACGCT
TGCAGAGGGATCGTGTGTGAACTCACAGCATTGACTGCTGTTTGCGGAAG
TTGCAGGCCAAATACCTCGTGTTCTGGCATGTGGTTTTACCTTGTAACAC
ACGTAGCAGCCATAAAAAGCGGAGGTTGTGAGCAGAAGAACATTGCTGAT
GACATGATTAGCTCGTGTTCGGCCAATAAGGCACACAACGCCCTGATTTT
TGGATGCCGGCAGAGGGTTTGTGGATGACCTACGGGATTGGCCTCTGTCT
AGGCAATGCATGCGGTAGTTGCTCTCATTCTGGCACGATCACCTGTTTCC
GTCAAAACACTGAATTTTTCTCGTTTCCAAGAAAACGAAGGAGCCCTTCA
AAAAGCGCCCTCCTTCGATTTCTCGGAAACGAGAAAAAAGCAGAAAAAAC
GCCTCCCTAAACTGAACAATTCCGAGAAAAAGAAGAAAAGCAAGAATTAT
ATGCCCTCGTTAAGGACGACCCTTAGTCTACTACTGCTTCGGTCGAGGCA
GGACAGTAAAAGGAAGAAGTACAACGTAGCACGTATGTTACGTAAAGATA
TGGCGGTACACGTGAGAGTTTATCTCCTCCCTTGTGACCCCGGCTGGTGC
GTCAAGCTGTGTCTTACCAAAAGTTGCAGACTGACGTCACAATGGATGGG
ACGAAAACACACACACGCAGACGTGCATTCATCGTTGGCGCCGTACATAT
GTCTTTCAGCAGGCAAAACGCGCTGTGTTGCAACCTACGGATACAGCTGC
AGTATAGTCTAGTCTATGTATTGCAGTACATGTAATCGACCGGTATGTCG
CACCGCCGTGTCAATGTTCCTCCGACAAACAAAAGGTAAGATTTTCCACA
AGAGCTGTGATAAACACTGCTGTTGGTACTGTAGGAAAAGGAAAAGAGAG
GCCGGTACTCGGTGGGGGTTCTTGTGTTCAGTCACAGACGAACGCCACAA
GGTCGCTCGAGGTGTGAAGTGGGTGCACAACGCAATTGTGCCATCTCTTA
GGCTTCCAACTAACCCCCCTTTTTTCAACATTATTCAAACAACAAGATTC
TGGAGGATGGAATAGACGGAGCACTCGGCCCGAACACGCCTGTTAGAGAC
GATGCACTTTCTCCTGCTTTGTCTGTGGAGCATGCGGACCCAGATGGTGG
AAGTGAGAGCATCTACGATTTGACGCTTGACGATCCTGTTCTCACTCTTG
GAGTCTCTTTGGGCGGAGAAGACGAGCGCATGCTCTACTACTACGCCGGT
CAGGTAGGGACGACTCATTCCGCGGCGCTAACAAGCCAAACGCTTTTGCA
AATCGCCGTCGGGGCGCAGTCCGATCAGACCTGACTGAAAGCTATGCAGC
TCTCTTTACGGTCCGTGATCCCTGTGTCTGCAGGCACGTCGTTTAGAGGG
AATCTGCTTTAGGAGACCTCTAGCTACCCCGCTGAGTGTCAACTTCGTGT
GCAGGTGTATTATTTTGATGATAGTCCACCTCCTCACCCACGCACCTTTC
GACCCTGCACCACCCTTCGGCATTTAGGACGTCGCGGACGTGGCCATGGT
CTTCTGCACCGAGAACCTTGTCTTGTCAACTTCTGCCGAGGAACTGGCAA
GGTGCTCCGACGCTCTCTCGGCACACGTAACCGAAACTATCACCGCCGCT
GATTCCGTTACGACGGACGATACTCCTGCTTTGGCTGAGGGGCATGTGGA
CCCAGACGGTGAAAGCGAGAGCATCTACGATTCGGCGCTTGACGATCCTG
TTCTCACTCTTGAGGTATCCTTGGGCGGGAAAGACGAGCGCATGCTCTAC
TACTACGCCGGTCAGGTAGGGACGACTCATTCCGCGGCGCCAACGAACCC
AACGCTTTTGCAAATCGCCGTCGGGGCGCAGTCCGGTCAGGCCTGACTGA
AAGCTATAGCTCTGTTTACCGTCCGTCGTCCCTGCTAACGGTCCATGATC
CCTGCATCTGCGGGAACGTCGTTTGGAGGGAGTCTGCTTTGGGTACCTGT
AGCCACCCCTCTGAGTGCAACTTCGCGTGTAGGTGTATGTAGGTGTATTC
GGTTGATGATAGTCCACCCTCTCACCCACGCACCCTTCGACTCTGCGCCA
CCTTTCGGTACTTAGGACGTCGCGGACGTGGCCATGGCCTTCTGCACCGA
GAACCTTGTCTCCTCAGCTTCTGCCGAGGAACTGACAAGGTGCTCCGACG
CTCTCTCGGCACACCTAACCGAAAATATCAGCACCGCTAATACCGTTGTG
ACGGACAAAAATCGATCCGAGCAGCAGCAGCAGCAGCAGGACGAGCAACA
GGTAAAGCAGGGCGAAACTCAAGAGCCCAAGGTCTCATATTCCGCTACGA
AACCGCTGGTGACGGTCCCACTAAACATCAACGGGAGAGAGACGGCGCTT
CAGATTTTCCAAGGATCCCACGCCATGGAGCTGGCTAATGAGTTCTGCCA
TCGGGAGGAACTCGGCCTTGAAGAGTCTTCCATGGACAGCTGCCTTTCTC
AGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig144:50761..54365+

>mRNA_L-elsbetiae_contig144.3248.1 ID=mRNA_L-elsbetiae_contig144.3248.1|Name=mRNA_L-elsbetiae_contig144.3248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig144:50761..54365+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGTGCCACGAATACTTGTGGCCAGCTTAGTGTCGTGTCTCGCGCT
TACATACACTGGCGGAAGTGCTCAGACCTTGCCAGCGGATGCTGCGAAGA
TGGCATCTCCCAAATTCCTTTACTCAATCGATGTTTTGCTGGACGAATCC
ACGTCTCCGGTGATTCTGGGCATCCGCCATGGGCAAACCGTTGCTCAGAT
GTCGGTGCCACGAATACTTGTGGCCAGCTTAGTGTCGTGTCTCGCGCTTA
CATACACTGGCGGAAGTGCTCAGACCTTGCCAGCGGATGCTGCGAAGATG
GCATCTCCCAAATTCCTTTACTCAATCGATGTTTTGCTGGACGAATCCAC
GTCTCCGGTGATTCTGGGCATCCGCCATGGGCAAACCGTTGCTCAGGCTG
CAGTGGGATTCTGTCGCGAGCAAGGCTTGGATGGAGCGATGAAAAGTAAG
CTGATTCCGCAGCTTGTCAAGGCTGCAGTGGGATTCTGTCGCGAGCAAGG
CTTGGATGGAGCGATGAAAAGTAAGCTGATTCCGCAGCTTGTCAAGATTC
TGGAGGATGGAATAGACGGAGCACTCGGCCCGAACACGCCTGTTAGAGAC
GATGCACTTTCTCCTGCTTTGTCTGTGGAGCATGCGGACCCAGATGGTGG
AAGTGAGAGCATCTACGATTTGACGCTTGACGATCCTGTTCTCACTCTTG
GAGTCTCTTTGGGCGGAGAAGACGAGCGCATGCTCTACTACTACGCCGGT
CAGATTCTGGAGGATGGAATAGACGGAGCACTCGGCCCGAACACGCCTGT
TAGAGACGATGCACTTTCTCCTGCTTTGTCTGTGGAGCATGCGGACCCAG
ATGGTGGAAGTGAGAGCATCTACGATTTGACGCTTGACGATCCTGTTCTC
ACTCTTGGAGTCTCTTTGGGCGGAGAAGACGAGCGCATGCTCTACTACTA
CGCCGGTCAGGACGTCGCGGACGTGGCCATGGCCTTCTGCACCGAGAACC
TTGTCTCCTCAGCTTCTGCCGAGGAACTGACAAGGTGCTCCGACGCTCTC
TCGGCACACCTAACCGAAAATATCAGCACCGCTAATACCGTTGTGACGGA
CAAAAATCGATCCGAGCAGCAGCAGCAGCAGCAGGACGAGCAACAGGTAA
AGCAGGGCGAAACTCAAGAGCCCAAGGTCTCATATTCCGCTACGAAACCG
CTGGTGACGGTCCCACTAAACATCAACGGGAGAGAGACGGCGCTTCAGAT
TTTCCAAGGATCCCACGCCATGGAGCTGGCTAATGAGTTCTGCCATCGGG
AGGAACTCGGCCTTGAAGAGTCTTCCATGGACAGCTGCCTTTCTCAGGTG
GACGTCGCGGACGTGGCCATGGCCTTCTGCACCGAGAACCTTGTCTCCTC
AGCTTCTGCCGAGGAACTGACAAGGTGCTCCGACGCTCTCTCGGCACACC
TAACCGAAAATATCAGCACCGCTAATACCGTTGTGACGGACAAAAATCGA
TCCGAGCAGCAGCAGCAGCAGCAGGACGAGCAACAGGTAAAGCAGGGCGA
AACTCAAGAGCCCAAGGTCTCATATTCCGCTACGAAACCGCTGGTGACGG
TCCCACTAAACATCAACGGGAGAGAGACGGCGCTTCAGATTTTCCAAGGA
TCCCACGCCATGGAGCTGGCTAATGAGTTCTGCCATCGGGAGGAACTCGG
CCTTGAAGAGTCTTCCATGGACAGCTGCCTTTCTCAGGTG
back to top