mRNA_L-elsbetiae_contig14389.3237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14389.3237.1
Unique NamemRNA_L-elsbetiae_contig14389.3237.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.320e-41
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 228
            SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM+GVGG
Sbjct:   50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGG 125          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 7.610e-41
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 228
            SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVC+SCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG
Sbjct:   50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCISCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 125          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.640e-24
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213
            +NGS R+TIAH GT+VLAAVK+E G P   AP  GRVEVCV CSNSLFP FD+RS GDVNA LS  L R++
Sbjct:   29 ANGSARITIAHGGTEVLAAVKIETGVPSADAPHEGRVEVCVECSNSLFPTFDDRSGGDVNAALSLMLARTV 99          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0GZ67_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GZ67_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.390e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALER 207
            +NGS R+ + H  TDVL AVKV +GEPD+A P  GRVE  V+C+ S   +++ R +  +N  L+  L R
Sbjct:   24 ANGSARLQLDH--TDVLVAVKVAIGEPDVATPDQGRVECSVTCAPSASLRYEGRGAETLNVYLTSGLSR 90          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0K9R238_SPIOL (Uncharacterized protein n=7 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9R238_SPIOL)

HSP 1 Score: 58.2 bits (139), Expect = 3.660e-8
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGGKS 234
            +NGS RV I   GTDV+A+VK E+G P+ A PG G+V + + CS +  P F  +    ++  L+  L+R +  +GGKS
Sbjct:   43 ANGSARVRIG--GTDVIASVKAELGRPNSAQPGKGKVSIHIDCSATAAPIFQGKGGEALSTELAADLQRCL--LGGKS 116          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0XD23_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XD23_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 3.420e-6
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 222
            ++GS R+ +    TDV+ AVK ++G P    PG GR++  V  S S  P ++ R    +   L  ALERS+ G 
Sbjct:   44 ASGSARLRLGGGCTDVMVAVKADIGAPSKENPGHGRLQCSVELSASADPMYEGRGGDGLGVELGKALERSLLGA 117          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A061SH06_9CHLO (Exosome complex component RRP42 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SH06_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213
            ++GS+R  +    TDVL AVK EVGEP    P  G V V V  S    P+F+ R S ++ + L+ AL RS+
Sbjct:   41 ASGSSRFQLG--ATDVLVAVKAEVGEPTKERPDCGXVNVQVDISACASPEFEGRGSEELGSELAAALTRSI 109          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A5J4Y952_9CHLO (Exosome complex component RRP42-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y952_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.000e-5
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213
            ++GS R+ +    TDVL AVKVE+G P    P  G +   V CS    P+F  R   ++ A  +  LERSM
Sbjct:   41 ASGSARLKLG--ATDVLVAVKVELGTPTPDRPDCGNIFFAVECSPCANPQFQGRGGDELGAEFAKGLERSM 109          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0D2MDY6_9CHLO (Exosome complex exonuclease RRP42 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MDY6_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.190e-5
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFD----ERSSGDVNAVLSGALERSMRGV 222
            +NGS+R+ +    TDV+A VKV +G+P+  AP  G+V V V CS+   P+F     ER      AV    L  S RG+
Sbjct:   44 ANGSSRLHVG--ATDVIAGVKVSLGQPEAGAPDKGQVFVSVECSSCASPEFKASPVERPGKGPAAVEQAGLRGSGRGL 119          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0H000_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H000_MICPS)

HSP 1 Score: 49.7 bits (117), Expect = 4.300e-5
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 222
            ++GS R+ +    TDV+ AVK ++G P  A P  GR+   V  S S  PK++ R      A L+ ALER + G 
Sbjct:   80 ASGSARLRLGD--TDVMVAVKADIGTPPKAYPTHGRLSCAVELSASADPKYEGRGGEKAGAELARALERGLLGA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYR5_ECTSI4.320e-4194.74RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JQU5_9PHAE7.610e-4194.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWB1_9STRA2.640e-2467.61Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S0GZ67_9EUKA2.390e-944.93Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0K9R238_SPIOL3.660e-841.03Uncharacterized protein n=7 Tax=Chenopodiaceae Tax... [more]
A0A7S0XD23_9CHLO3.420e-636.49Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A061SH06_9CHLO1.120e-542.25Exosome complex component RRP42 n=1 Tax=Tetraselmi... [more]
A0A5J4Y952_9CHLO4.000e-539.44Exosome complex component RRP42-like n=1 Tax=Trebo... [more]
A0A0D2MDY6_9CHLO4.190e-539.74Exosome complex exonuclease RRP42 n=1 Tax=Monoraph... [more]
A0A7S0H000_MICPS4.300e-537.84Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14389contigL-elsbetiae_contig14389:272..867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6.3e-32
Seed eggNOG ortholog2880.D7FYR5
Preferred nameEXOSC7
KEGG koko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1612@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Ec32 ortholog descriptionRrp42 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-26_004200.1
Exons2
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.467097-CDS-L-elsbetiae_contig14389:271..4421622815575.467097-CDS-L-elsbetiae_contig14389:271..442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14389 272..442 -
1691682968.7637732-CDS-L-elsbetiae_contig14389:271..4421691682968.7637732-CDS-L-elsbetiae_contig14389:271..442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14389 272..442 -
1622815575.4792526-CDS-L-elsbetiae_contig14389:804..8671622815575.4792526-CDS-L-elsbetiae_contig14389:804..867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14389 805..867 -
1691682968.7765722-CDS-L-elsbetiae_contig14389:804..8671691682968.7765722-CDS-L-elsbetiae_contig14389:804..867Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14389 805..867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14389.3237.1prot_L-elsbetiae_contig14389.3237.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14389 272..867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14389.3237.1

>prot_L-elsbetiae_contig14389.3237.1 ID=prot_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPK
FDERSSGDVNAVLSGALERSMRGVGGKS
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mRNA from alignment at L-elsbetiae_contig14389:272..867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14389.3237.1 ID=mRNA_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=596bp|location=Sequence derived from alignment at L-elsbetiae_contig14389:272..867- (Laminarionema elsbetiae ELsaHSoW15)
TCCAATGGATCGACGAGAGTAACGATAGCTCACAACGGCACCGATGTTCT CGCTGCAGTGAAGGTGAACGGCAGCAGGAGTGTCTATGCAGAGGTGCATA CATAACAACCCCCACAACAGCAGTCAAAAATTGGCGCCGCACACCCCCAC GTCAGGGATCGACATTGCGCCGCTTCTGTTGCCATCGCTGCTGTTGCCGT TGCTGCCGGAAGACAGATCGTTTCCTGGCAAACAAGACTACTGCTGTGCG GTGGTCGGGCGTGGCCCCCCTGAAGGACTCAAAAATAGTACCCCCGAGTC GTATCCTATACATTTGCGTTTGACTTTATTCTCCTAGACAAACAAAAGCC TACCCGCGACGCATCTCAACGTACCCCGTGTATCACGCATGGTACATCCC GATCGATCGAATCGATTCAACCCAGGTGGAGGTGGGAGAGCCGGACCTTG CCGCCCCCGGCGCCGGCCGCGTGGAGGTGTGTGTTTCGTGCTCGAACAGC CTGTTTCCCAAGTTCGACGAGAGGTCATCGGGGGACGTCAACGCCGTACT AAGCGGGGCCCTCGAGCGGAGCATGCGCGGGGTCGGCGGTAAGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14389:272..867-

>mRNA_L-elsbetiae_contig14389.3237.1 ID=mRNA_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig14389:272..867- (Laminarionema elsbetiae ELsaHSoW15)
TCCAATGGATCGACGAGAGTAACGATAGCTCACAACGGCACCGATGTTCT
CGCTGCAGTGAAGTCCAATGGATCGACGAGAGTAACGATAGCTCACAACG
GCACCGATGTTCTCGCTGCAGTGAAGGTGGAGGTGGGAGAGCCGGACCTT
GCCGCCCCCGGCGCCGGCCGCGTGGAGGTGTGTGTTTCGTGCTCGAACAG
CCTGTTTCCCAAGTTCGACGAGAGGTCATCGGGGGACGTCAACGCCGTAC
TAAGCGGGGCCCTCGAGCGGAGCATGCGCGGGGTCGGCGGTAAGAGCGTG
GAGGTGGGAGAGCCGGACCTTGCCGCCCCCGGCGCCGGCCGCGTGGAGGT
GTGTGTTTCGTGCTCGAACAGCCTGTTTCCCAAGTTCGACGAGAGGTCAT
CGGGGGACGTCAACGCCGTACTAAGCGGGGCCCTCGAGCGGAGCATGCGC
GGGGTCGGCGGTAAGAGC
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