mRNA_L-elsbetiae_contig14381.3235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14381.3235.1
Unique NamemRNA_L-elsbetiae_contig14381.3235.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 5.060e-52
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYMVPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            +EPLVVALTGSTGTGKTETAWVLA+A+LTKRCRI+GGTRDIPRGLLV NGADYMV +K+EEYQ LIRRKLGQRLEYC GNVVVLFDELQKAAPGTLD
Sbjct:  101 YEPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLNGADYMVAAKVEEYQSLIRRKLGQRLEYCGGNVVVLFDELQKAAPGTLD 197          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.660e-21
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISG-GTRDIPRGLLVFNGADYMVP--SKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
             +PLV+A+TG TG GKTETA VLAEA+L KR ++S  G R  P GL++F G D+     + + +Y   I+ +L   L +CAGN VVLFDE+QK  PGTLD
Sbjct:  208 QQPLVIAITGPTGVGKTETAHVLAEALLQKREKVSETGDRTRPAGLIIFRGEDFSDAEGAPLAQYHTEIKSRLVNHLRHCAGNAVVLFDEVQKIIPGTLD 307          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.780e-20
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            H PLV+A+TG TGTGKTET+ +LAE +   R R+    +++P GLLVF G D+     + + EYQ  I+ +L + + +C+G  VV+FDE+QK  P TLD
Sbjct:  124 HAPLVLAITGPTGTGKTETSNLLAEGLFKHRKRLQHSEKEVPSGLLVFRGEDFSDNYTNPLTEYQEQIKTRLAEHIYHCSGKAVVVFDEVQKVIPHTLD 222          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A6A5A657_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A657_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.090e-20
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLDG 294
            H PLV+ALTG TGTGKTE++ +LAEA+     R+    +D P GLLVF G D+     + + +YQ  I+ +L + L  C+G  +V+FDE+QK  P TLDG
Sbjct:  113 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFRGEDFSDNYTNPVSQYQEQIKSRLAEHLFRCSGKALVVFDEVQKVIPHTLDG 212          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: W2RH75_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2RH75_PHYPN)

HSP 1 Score: 88.6 bits (218), Expect = 3.510e-20
Identity = 43/98 (43.88%), Postives = 65/98 (66.33%), Query Frame = 1
Query:    7 PLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLDG 294
            PLV+A+TG TGTGKTE + ++AEA+  ++ ++S   + +P GLL+F G D+     + I EY   I+ +L + L +C+G  VV+ DE+QK  P TLDG
Sbjct:   56 PLVLAITGPTGTGKTEMSNLIAEALFKRKKKLSNSEKRVPSGLLIFRGEDFSDNFTNPITEYHTQIKTRLAEHLHHCSGKAVVVIDEVQKVIPHTLDG 153          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A7S4DD61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD61_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 3.100e-19
Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    7 PLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            PLV+A+TG TG GKTETA VL EA+L +R          P+GLLVF G D+       I  Y   I+ +L   L +C GN VVLFDE+QK  PGTLD
Sbjct:   93 PLVLAITGPTGVGKTETAHVLGEALLARRSARGXXXXXAPQGLLVFRGEDFSDAAAMPISRYHTEIKSRLVAHLRHCGGNAVVLFDEVQKVVPGTLD 189          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A6G0W9D6_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 4.270e-19
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    7 PLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            PLV+A+TG TGTGKTET+ +LAE +  +R R+    ++I  GL+VF G D+     + + EYQ  I+ +L + L +C+G  +V+FDE+QK  P TLD
Sbjct:  121 PLVLAITGPTGTGKTETSNLLAEGLFKRRKRLEHSEKEIASGLIVFRGEDFSDNFTNPVTEYQEQIKTRLAEHLSWCSGKAIVVFDEVQKVIPHTLD 217          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A1W0A1S8_9STRA (AAA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1S8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.410e-19
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADY--MVPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            H P+V+A+TG TGTGKT+TA ++AEA+  +R ++    +  P GL+VF+G D+  +  + + E+Q  I+ +L + L  C+G  VV+FDE+QK  P TLD
Sbjct:   84 HAPMVLAITGPTGTGKTKTATLIAEALFQRRRKLENSIKYEPTGLIVFSGQDFNDVTKNPVTEHQEQIKSRLVEHLSTCSGKAVVVFDEVQKVVPQTLD 182          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A3L6V0S8_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V0S8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.320e-19
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1
Query:    1 HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADYM--VPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            H PLV+ALTG TGTGKTE++ +LAEA+     R+    +D P GLLVF G D+     + + +YQ  I+ +L + L  C+G  +V+FDE+QK  P TLD
Sbjct:  113 HAPLVLALTGPTGTGKTESSNLLAEALFKWTKRLDHSDKDSPSGLLVFRGEDFSDNYTNPVSQYQEQIKSRLAEHLFRCSGKALVVFDEVQKVIPHTLD 211          
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Match: A0A2D4BEI3_PYTIN (AAA domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEI3_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 7.310e-19
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 PLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNGADY--MVPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLD 291
            PLV+A+TG TGTGKTET+++LAE++  +  ++S G R +  GLLVF G  +   V + I +Y   I  +L + L  C+G  VVLFDE+QK  P TLD
Sbjct:   75 PLVLAITGPTGTGKTETSYLLAESLFKRSRKLSNGDRTVASGLLVFRGEHFGDNVSNPITQYHTQITTRLAEHLHMCSGKAVVLFDEVQKVIPHTLD 171          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14381.3235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V5_ECTSI5.060e-5289.69AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V512_9STRA3.660e-2152.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485KDB2_9STRA1.780e-2046.46Aste57867_2684 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6A5A657_9STRA2.090e-2047.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W2RH75_PHYPN3.510e-2043.88Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A7S4DD61_HETAK3.100e-1950.52Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6G0W9D6_9STRA4.270e-1945.36AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A1W0A1S8_9STRA4.410e-1943.43AAA domain-containing protein n=1 Tax=Thraustothec... [more]
A0A3L6V0S8_9STRA6.320e-1946.46AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A2D4BEI3_PYTIN7.310e-1947.42AAA domain-containing protein (Fragment) n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14381contigL-elsbetiae_contig14381:438..1517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.0
Seed ortholog evalue2.6e-43
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.3634-CDS-L-elsbetiae_contig14381:437..5851622815575.3634-CDS-L-elsbetiae_contig14381:437..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14381 438..585 -
1691682968.730833-CDS-L-elsbetiae_contig14381:437..5851691682968.730833-CDS-L-elsbetiae_contig14381:437..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14381 438..585 -
1622815575.378318-CDS-L-elsbetiae_contig14381:1371..15171622815575.378318-CDS-L-elsbetiae_contig14381:1371..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14381 1372..1517 -
1691682968.740215-CDS-L-elsbetiae_contig14381:1371..15171691682968.740215-CDS-L-elsbetiae_contig14381:1371..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14381 1372..1517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14381.3235.1prot_L-elsbetiae_contig14381.3235.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14381 438..1517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14381.3235.1

>prot_L-elsbetiae_contig14381.3235.1 ID=prot_L-elsbetiae_contig14381.3235.1|Name=mRNA_L-elsbetiae_contig14381.3235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
HEPLVVALTGSTGTGKTETAWVLAEAMLTKRCRISGGTRDIPRGLLVFNG
ADYMVPSKIEEYQRLIRRKLGQRLEYCAGNVVVLFDELQKAAPGTLDG
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mRNA from alignment at L-elsbetiae_contig14381:438..1517-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14381.3235.1 ID=mRNA_L-elsbetiae_contig14381.3235.1|Name=mRNA_L-elsbetiae_contig14381.3235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig14381:438..1517- (Laminarionema elsbetiae ELsaHSoW15)
CACGAGCCGCTGGTGGTGGCGCTGACGGGGTCGACGGGCACGGGCAAGAC AGAGACGGCGTGGGTGCTGGCCGAGGCCATGCTTACCAAGCGGTGTCGCA TTAGCGGGGGCACCAGGGACATCCCCAGAGGGCTCCTCGTGTTCAAGTAA GCCGAGCTATAATATAGATAAAAAGCAAAAACCAGCATGTTTATTGTGTA TTCTGCGATGTATCTAGATGACCCCCGACTGCTGTTAGAGAAAATCGTAC TCCTGTGCATGTGATGTTGAATATGATGCACGTCTATCATCCATGCGCGG GGGGGGTTTACTTTGATTTTAGCCTTAGGCAGAGCAAGGCAATTCGAGTG TTTGGGGTGGTGAGCAAGGAGAGGAAGGTGTGAGGGTGAGGGGGGTGCTC CGTGCTTCTTCTCGCGGTCGGTCGTGCATCATGCAGCAAGCCGTCAGATA TCTTGATAGACTACTGTGCGGACCTCGAGCCGCATCCCTGCAAAAGCCTC AGCTTGTAGAACGGGGGCACGCCAGATTTCGCGGAGCCACAATACGTAAG GCACATCTTCGGCGAGCGAGGGTACGGTCGAGAGAGAGAGTCATTCCGCC ACTTAAATGCCCCACTTCAGGTATCGATCGGGTCGTGTGCGAAGCCACAC GGACAGGTTTGGTGTGACTGTTTCCGGCATTTTTCGAGCATAAATACACG TGTAATTCAGGGTGCCACTCCCCTCACACAGCTTTGGCGTGTATAGCTCT CCCACCACGCGAGCGAGCCACCGCCTCTGATGTTCGCTGCCATGTGCCCG AAACACGCCCAGCGCGTCAGCGTTCCCGGCGTACATGCTTCGTGCAGGCA GTGCCGTGCCTGTTCCGCTCGCTCTGTCTGCGTCGTGCCGCCTTCTTTGG CTTACCTGATTTTGTTTTCCTGCGCCACGCAGTGGGGCGGACTACATGGT TCCGTCCAAGATAGAAGAGTACCAGAGGTTGATAAGGAGGAAGCTGGGCC AGCGGCTGGAGTACTGTGCCGGCAACGTGGTGGTGCTGTTCGACGAGCTG CAGAAGGCCGCCCCGGGCACGCTGGACGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14381:438..1517-

>mRNA_L-elsbetiae_contig14381.3235.1 ID=mRNA_L-elsbetiae_contig14381.3235.1|Name=mRNA_L-elsbetiae_contig14381.3235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig14381:438..1517- (Laminarionema elsbetiae ELsaHSoW15)
CACGAGCCGCTGGTGGTGGCGCTGACGGGGTCGACGGGCACGGGCAAGAC
AGAGACGGCGTGGGTGCTGGCCGAGGCCATGCTTACCAAGCGGTGTCGCA
TTAGCGGGGGCACCAGGGACATCCCCAGAGGGCTCCTCGTGTTCAACACG
AGCCGCTGGTGGTGGCGCTGACGGGGTCGACGGGCACGGGCAAGACAGAG
ACGGCGTGGGTGCTGGCCGAGGCCATGCTTACCAAGCGGTGTCGCATTAG
CGGGGGCACCAGGGACATCCCCAGAGGGCTCCTCGTGTTCAATGGGGCGG
ACTACATGGTTCCGTCCAAGATAGAAGAGTACCAGAGGTTGATAAGGAGG
AAGCTGGGCCAGCGGCTGGAGTACTGTGCCGGCAACGTGGTGGTGCTGTT
CGACGAGCTGCAGAAGGCCGCCCCGGGCACGCTGGACGGTTGGGGCGGAC
TACATGGTTCCGTCCAAGATAGAAGAGTACCAGAGGTTGATAAGGAGGAA
GCTGGGCCAGCGGCTGGAGTACTGTGCCGGCAACGTGGTGGTGCTGTTCG
ACGAGCTGCAGAAGGCCGCCCCGGGCACGCTGGACGGT
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