mRNA_L-elsbetiae_contig14377.3231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14377.3231.1
Unique NamemRNA_L-elsbetiae_contig14377.3231.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14377.3231.1 vs. uniprot
Match: A0A6H5JNJ8_9PHAE (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNJ8_9PHAE)

HSP 1 Score: 546 bits (1408), Expect = 4.060e-192
Identity = 289/412 (70.15%), Postives = 333/412 (80.83%), Query Frame = 1 
Query:    1 MAADATSD-KVWQELRKLRDDIPPPLDSNDPG-----QDSFFYKNYAAFAACNEVRAAIGRCSELPRDEFLDFFTRLVAGPRLEELFDLFKASRNPQHPALQYACLLALHGVAELSDRRKDLLTRPDVVRELCAVMASPRQRMITPKSAGAGGSEVVNTAAGAVTTITGLFTSNGTLEPAFAKVWVDLGAVSALAACLESHAAFDRANPVSTDLPLCFFLVATSLLAGAAGAVSKQDKIRLGTAWLTVFVEATRWVAHEAADLLADFFTRPAWLMGVVAKIPEGLRARAVEAARVCERAGASGGGSGVCSSWKRGRADRLALALLCGCPAVWDEGRKLVGRRCAGPGCEHVQRCGDGAEVIGVDASVGAGVAEETGSAVPFKRCSQCRAVAYCSRECQAAHWKKGHKKACAA 1218
            M AD+TS  K+WQELRKLRDDIPPP+D+N        + S  YK++AAFAACNEVR AIGR S LPRD+FL  F +LVAGPRL+EL +LFK SR+P HPALQYACL+ALHGVAELSDRRKDLLTRPDVV+ELCAVMASPRQR++TP SAGAGG E+VN AAGAVTTITGLFTSNG LEP +AK+WV+LGAVSALA+CLE+HA FDR+NPVS DLPLCFFL+ATSLLAGAA +VS++DK+RLG AWLTVF+EATRW+A EAADLLADF+TRP WL  +V ++PE LRA AV AAR CER G +G GS   S WK G+ADRLALALLCG    WD G +LVGRRCAGP C+ VQ+CG G       AS   G   +  ++V FKRCSQC AV YCSRECQ A WKK H+KAC+A
Sbjct:    1 MTADSTSSSKIWQELRKLRDDIPPPVDNNTGSNKGDQESSTCYKDFAAFAACNEVRVAIGRSSALPRDQFLAIFRQLVAGPRLDELLELFKFSRSPPHPALQYACLVALHGVAELSDRRKDLLTRPDVVKELCAVMASPRQRLVTPTSAGAGGVEIVNAAAGAVTTITGLFTSNGPLEPPYAKLWVELGAVSALASCLENHAVFDRSNPVSGDLPLCFFLIATSLLAGAADSVSEEDKLRLGKAWLTVFLEATRWIADEAADLLADFYTRPNWLKNIVERMPEKLRASAVAAARECEREG-TGSGS---SPWKGGKADRLALALLCGNAYNWDAGGELVGRRCAGPRCDRVQKCGHGGGNPHPAASEDEG--GDGAASVAFKRCSQCHAVGYCSRECQKAGWKK-HRKACSA 405
[Close]
BLAST of mRNA_L-elsbetiae_contig14377.3231.1 vs. uniprot
Match: E1ZA90_CHLVA (MYND-type domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZA90_CHLVA)

HSP 1 Score: 58.5 bits (140), Expect = 6.570e-6
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query: 1114 AVPFKRCSQCRAVAYCSRECQAAHWKKGHKKACAAA 1221
            A   K+CS+CRAVAYC RECQ AHW++GHK+ CA A
Sbjct:  265 AAELKKCSRCRAVAYCCRECQMAHWRRGHKRECAPA 300
[Close]
BLAST of mRNA_L-elsbetiae_contig14377.3231.1 vs. uniprot
Match: A0A7S4FNL6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FNL6_9EUGL)

HSP 1 Score: 54.3 bits (129), Expect = 4.310e-5
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 1 
Query: 1102 ETGSAVPFKRCSQCRAVAYCSRECQAAHWKKGHKKAC 1212
            ETG    +K+C++CRAV+YCS+ECQ AHWK GHK  C
Sbjct:  135 ETGG--KYKQCARCRAVSYCSKECQRAHWKAGHKAEC 169
[Close]
BLAST of mRNA_L-elsbetiae_contig14377.3231.1 vs. uniprot
Match: A0A7S3ZTC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTC2_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.820e-5
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query: 1117 VPFKRCSQCRAVAYCSRECQAAHWKKGHKKAC 1212
            VP K C+ C  VAYCSR+CQA+HWKKGH+K C
Sbjct:  466 VPVKACTGCHRVAYCSRKCQASHWKKGHRKLC 497
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14377.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JNJ8_9PHAE4.060e-19270.15MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
E1ZA90_CHLVA6.570e-666.67MYND-type domain-containing protein n=1 Tax=Chlore... [more]
A0A7S4FNL6_9EUGL4.310e-562.16Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3ZTC2_9STRA8.820e-568.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14377contigL-elsbetiae_contig14377:888..2298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-02_005590.1
Exons2
Model size1227
Cds size1227
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.8747716-CDS-L-elsbetiae_contig14377:887..13931622815574.8747716-CDS-L-elsbetiae_contig14377:887..1393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14377 888..1393 +
1691682968.3768141-CDS-L-elsbetiae_contig14377:887..13931691682968.3768141-CDS-L-elsbetiae_contig14377:887..1393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14377 888..1393 +
1622815574.8868403-CDS-L-elsbetiae_contig14377:1577..22981622815574.8868403-CDS-L-elsbetiae_contig14377:1577..2298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14377 1578..2298 +
1691682968.3883448-CDS-L-elsbetiae_contig14377:1577..22981691682968.3883448-CDS-L-elsbetiae_contig14377:1577..2298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14377 1578..2298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14377.3231.1prot_L-elsbetiae_contig14377.3231.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14377 888..2298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14377.3231.1

>prot_L-elsbetiae_contig14377.3231.1 ID=prot_L-elsbetiae_contig14377.3231.1|Name=mRNA_L-elsbetiae_contig14377.3231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=409bp
MAADATSDKVWQELRKLRDDIPPPLDSNDPGQDSFFYKNYAAFAACNEVR
AAIGRCSELPRDEFLDFFTRLVAGPRLEELFDLFKASRNPQHPALQYACL
LALHGVAELSDRRKDLLTRPDVVRELCAVMASPRQRMITPKSAGAGGSEV
VNTAAGAVTTITGLFTSNGTLEPAFAKVWVDLGAVSALAACLESHAAFDR
ANPVSTDLPLCFFLVATSLLAGAAGAVSKQDKIRLGTAWLTVFVEATRWV
AHEAADLLADFFTRPAWLMGVVAKIPEGLRARAVEAARVCERAGASGGGS
GVCSSWKRGRADRLALALLCGCPAVWDEGRKLVGRRCAGPGCEHVQRCGD
GAEVIGVDASVGAGVAEETGSAVPFKRCSQCRAVAYCSRECQAAHWKKGH
KKACAAAH*
back to top

mRNA from alignment at L-elsbetiae_contig14377:888..2298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14377.3231.1 ID=mRNA_L-elsbetiae_contig14377.3231.1|Name=mRNA_L-elsbetiae_contig14377.3231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1411bp|location=Sequence derived from alignment at L-elsbetiae_contig14377:888..2298+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGACGCCACAAGCGACAAAGTCTGGCAAGAGCTACGCAAGCT
CAGAGACGACATTCCCCCGCCGCTGGACAGCAACGATCCAGGTCAAGACT
CTTTCTTCTACAAGAACTACGCGGCTTTTGCGGCTTGCAACGAGGTTCGC
GCTGCGATAGGCCGCTGCTCAGAGCTCCCTCGAGACGAGTTCCTCGATTT
CTTCACACGCCTCGTCGCGGGGCCCCGGCTCGAAGAACTTTTCGACCTCT
TCAAAGCTAGCCGGAATCCCCAGCACCCGGCCTTGCAGTACGCGTGCCTC
CTCGCCCTCCACGGCGTGGCCGAGCTTAGCGACCGGCGTAAAGACCTGCT
AACCCGCCCAGATGTTGTTCGCGAACTATGCGCTGTTATGGCATCTCCTC
GTCAACGGATGATCACGCCGAAGTCAGCTGGTGCAGGGGGTTCGGAGGTC
GTTAACACGGCGGCGGGCGCTGTAACAACCATCACTGGCCTCTTCACATC
CAATGGGTGCGGGCTAGCTTCCTTTGTCCTCGTACTGAAGACATATATCC
AACTTGTGTCATACGATTTCACCCGCAAAACCTCGTGGCGAGCAGCCACC
CCGTACTATGTGCCCCTCTGCATGCATCAGCTTCTTACATCCCCTTACAA
GATTCGTACCATTTTTCCTTGGCCACATCCCAAATGACAGCACGCTGGAG
CCCGCCTTCGCCAAAGTGTGGGTGGACCTTGGCGCCGTCTCCGCTCTAGC
AGCTTGTCTGGAATCCCATGCGGCGTTCGACAGGGCGAACCCAGTCTCCA
CCGATCTCCCCTTGTGTTTCTTCCTCGTCGCCACCTCGCTCCTCGCGGGG
GCGGCGGGGGCGGTGTCCAAGCAGGACAAGATCAGGTTGGGGACGGCTTG
GCTGACAGTCTTCGTGGAGGCGACGAGATGGGTAGCTCACGAGGCGGCGG
ACCTCCTTGCCGACTTTTTCACCCGTCCCGCCTGGCTTATGGGCGTCGTC
GCCAAGATTCCTGAGGGGCTCAGGGCGCGGGCGGTGGAAGCTGCGCGGGT
GTGTGAGCGAGCGGGGGCGAGCGGCGGGGGCAGCGGCGTTTGCAGCAGCT
GGAAGCGCGGCAGGGCTGACCGGCTGGCTCTGGCCCTGCTGTGCGGTTGT
CCTGCCGTGTGGGATGAAGGGCGAAAGCTGGTGGGGCGAAGGTGTGCAGG
CCCCGGGTGCGAGCACGTGCAAAGGTGTGGTGATGGTGCAGAGGTCATTG
GGGTTGATGCTTCTGTCGGTGCTGGTGTTGCCGAGGAAACGGGCAGTGCT
GTGCCGTTTAAACGGTGCTCGCAGTGTCGCGCCGTGGCGTATTGCTCACG
GGAGTGTCAAGCAGCACATTGGAAGAAGGGCCATAAAAAGGCGTGCGCCG
CGGCGCATTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14377:888..2298+

>mRNA_L-elsbetiae_contig14377.3231.1 ID=mRNA_L-elsbetiae_contig14377.3231.1|Name=mRNA_L-elsbetiae_contig14377.3231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2454bp|location=Sequence derived from alignment at L-elsbetiae_contig14377:888..2298+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGACGCCACAAGCGACAAAGTCTGGCAAGAGCTACGCAAGCT
CAGAGACGACATTCCCCCGCCGCTGGACAGCAACGATCCAGGTCAAGACT
CTTTCTTCTACAAGAACTACGCGGCTTTTGCGGCTTGCAACGAGGTTCGC
GCTGCGATAGGCCGCTGCTCAGAGCTCCCTCGAGACGAGTTCCTCGATTT
CTTCACACGCCTCGTCGCGGGGCCCCGGCTCGAAGAACTTTTCGACCTCT
TCAAAGCTAGCCGGAATCCCCAGCACCCGGCCTTGCAGTACGCGTGCCTC
CTCGCCCTCCACGGCGTGGCCGAGCTTAGCGACCGGCGTAAAGACCTGCT
AACCCGCCCAGATGTTGTTCGCGAACTATGCGCTGTTATGGCATCTCCTC
GTCAACGGATGATCACGCCGAAGTCAGCTGGTGCAGGGGGTTCGGAGGTC
GTTAACACGGCGGCGGGCGCTGTAACAACCATCACTGGCCTCTTCACATC
CAATGGATGGCGGCGGACGCCACAAGCGACAAAGTCTGGCAAGAGCTACG
CAAGCTCAGAGACGACATTCCCCCGCCGCTGGACAGCAACGATCCAGGTC
AAGACTCTTTCTTCTACAAGAACTACGCGGCTTTTGCGGCTTGCAACGAG
GTTCGCGCTGCGATAGGCCGCTGCTCAGAGCTCCCTCGAGACGAGTTCCT
CGATTTCTTCACACGCCTCGTCGCGGGGCCCCGGCTCGAAGAACTTTTCG
ACCTCTTCAAAGCTAGCCGGAATCCCCAGCACCCGGCCTTGCAGTACGCG
TGCCTCCTCGCCCTCCACGGCGTGGCCGAGCTTAGCGACCGGCGTAAAGA
CCTGCTAACCCGCCCAGATGTTGTTCGCGAACTATGCGCTGTTATGGCAT
CTCCTCGTCAACGGATGATCACGCCGAAGTCAGCTGGTGCAGGGGGTTCG
GAGGTCGTTAACACGGCGGCGGGCGCTGTAACAACCATCACTGGCCTCTT
CACATCCAATGGCACGCTGGAGCCCGCCTTCGCCAAAGTGTGGGTGGACC
TTGGCGCCGTCTCCGCTCTAGCAGCTTGTCTGGAATCCCATGCGGCGTTC
GACAGGGCGAACCCAGTCTCCACCGATCTCCCCTTGTGTTTCTTCCTCGT
CGCCACCTCGCTCCTCGCGGGGGCGGCGGGGGCGGTGTCCAAGCAGGACA
AGATCAGGTTGGGGACGGCTTGGCTGACAGTCTTCGTGGAGGCGACGAGA
TGGGTAGCTCACGAGGCGGCGGACCTCCTTGCCGACTTTTTCACCCGTCC
CGCCTGGCTTATGGGCGTCGTCGCCAAGATTCCTGAGGGGCTCAGGGCGC
GGGCGGTGGAAGCTGCGCGGGTGTGTGAGCGAGCGGGGGCGAGCGGCGGG
GGCAGCGGCGTTTGCAGCAGCTGGAAGCGCGGCAGGGCTGACCGGCTGGC
TCTGGCCCTGCTGTGCGGTTGTCCTGCCGTGTGGGATGAAGGGCGAAAGC
TGGTGGGGCGAAGGTGTGCAGGCCCCGGGTGCGAGCACGTGCAAAGGTGT
GGTGATGGTGCAGAGGTCATTGGGGTTGATGCTTCTGTCGGTGCTGGTGT
TGCCGAGGAAACGGGCAGTGCTGTGCCGTTTAAACGGTGCTCGCAGTGTC
GCGCCGTGGCGTATTGCTCACGGGAGTGTCAAGCAGCACATTGGAAGAAG
GGCCATAAAAAGGCGTGCGCCGCGGCGCATTAACACGCTGGAGCCCGCCT
TCGCCAAAGTGTGGGTGGACCTTGGCGCCGTCTCCGCTCTAGCAGCTTGT
CTGGAATCCCATGCGGCGTTCGACAGGGCGAACCCAGTCTCCACCGATCT
CCCCTTGTGTTTCTTCCTCGTCGCCACCTCGCTCCTCGCGGGGGCGGCGG
GGGCGGTGTCCAAGCAGGACAAGATCAGGTTGGGGACGGCTTGGCTGACA
GTCTTCGTGGAGGCGACGAGATGGGTAGCTCACGAGGCGGCGGACCTCCT
TGCCGACTTTTTCACCCGTCCCGCCTGGCTTATGGGCGTCGTCGCCAAGA
TTCCTGAGGGGCTCAGGGCGCGGGCGGTGGAAGCTGCGCGGGTGTGTGAG
CGAGCGGGGGCGAGCGGCGGGGGCAGCGGCGTTTGCAGCAGCTGGAAGCG
CGGCAGGGCTGACCGGCTGGCTCTGGCCCTGCTGTGCGGTTGTCCTGCCG
TGTGGGATGAAGGGCGAAAGCTGGTGGGGCGAAGGTGTGCAGGCCCCGGG
TGCGAGCACGTGCAAAGGTGTGGTGATGGTGCAGAGGTCATTGGGGTTGA
TGCTTCTGTCGGTGCTGGTGTTGCCGAGGAAACGGGCAGTGCTGTGCCGT
TTAAACGGTGCTCGCAGTGTCGCGCCGTGGCGTATTGCTCACGGGAGTGT
CAAGCAGCACATTGGAAGAAGGGCCATAAAAAGGCGTGCGCCGCGGCGCA
TTAA
back to top