mRNA_L-elsbetiae_contig14376.3230.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14376.3230.1
Unique NamemRNA_L-elsbetiae_contig14376.3230.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14376.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14376contigL-elsbetiae_contig14376:1700..2651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size502
Cds size480
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14376.3230.1prot_L-elsbetiae_contig14376.3230.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14376 1700..2630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.8118908-CDS-L-elsbetiae_contig14376:1699..21641622815574.8118908-CDS-L-elsbetiae_contig14376:1699..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14376 1700..2164 -
1691682968.349748-CDS-L-elsbetiae_contig14376:1699..21641691682968.349748-CDS-L-elsbetiae_contig14376:1699..2164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14376 1700..2164 -
1622815574.8239808-CDS-L-elsbetiae_contig14376:2615..26301622815574.8239808-CDS-L-elsbetiae_contig14376:2615..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14376 2616..2630 -
1691682968.3592708-CDS-L-elsbetiae_contig14376:2615..26301691682968.3592708-CDS-L-elsbetiae_contig14376:2615..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14376 2616..2630 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.8380332-UTR-L-elsbetiae_contig14376:2630..26511622815574.8380332-UTR-L-elsbetiae_contig14376:2630..2651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14376 2631..2651 -
1691682968.3678815-UTR-L-elsbetiae_contig14376:2630..26511691682968.3678815-UTR-L-elsbetiae_contig14376:2630..2651Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14376 2631..2651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14376.3230.1

>prot_L-elsbetiae_contig14376.3230.1 ID=prot_L-elsbetiae_contig14376.3230.1|Name=mRNA_L-elsbetiae_contig14376.3230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MELLRATTEQKRQLEPKQLLPGRPYGYRRLQWPLFRALAAALVYLGTATG
AAAASTAPTKVRLNGNEQQQQQQQGSRQHYAGSGWPGWRRNSRGGGKRQH
VSRSLDGGAAAAAAVAVAVAAAAPAERHRGPPGAVAFLPGGFGVGARQGQ
GQRQRQHQHR
back to top

mRNA from alignment at L-elsbetiae_contig14376:1700..2651-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14376.3230.1 ID=mRNA_L-elsbetiae_contig14376.3230.1|Name=mRNA_L-elsbetiae_contig14376.3230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=952bp|location=Sequence derived from alignment at L-elsbetiae_contig14376:1700..2651- (Laminarionema elsbetiae ELsaHSoW15)
CTCCGGGGAATCAGCCGCGCCATGGAGCTGCTCAGGGTAAGTCTGCCAAT
GAATTTCCGAGAAGTGAGCGTGATTTTCACAGCGGTGTCTCAGTCGATAG
TGCACTTCCAAAAAATGTATTCTGTTCCTGTTTTTCTCAACACACAACAG
GCGACAAACAGGCTTCTATTTTGTAGCTGCACTACACTGCACAAGTACAG
GCGAGCTCGTGCCAAGATGTAAGCATTCCAGCTGTCCTCGCGACTCGGTT
TGAGAAGATTTTGGCGTTGTCCAACACGTGCACAGTAGCGCCTCGCTGCC
GCTGCCCCAACAGCATCAGGATGGCACGAAAGCCACTGCTTTCAACATCT
CGACGGTTGCAGTTGGTCACGCGAAATACATAGGAGTATATGTGCATGCA
TAGTACTATTCTCGCCTACTACAACAGCTGTGTCATTGATGCATAGTACA
TTCTCGCCTCTGCTTTTGATGCACAATACGCTCTCAGGCCACCACCGAGC
AGAAGAGACAGCTTGAGCCAAAGCAGCTCCTCCCAGGCCGACCCTATGGG
TATCGCCGTCTGCAGTGGCCCCTCTTCCGCGCACTGGCGGCGGCGCTGGT
CTACCTTGGCACGGCCACCGGGGCGGCGGCGGCCAGCACGGCACCGACCA
AGGTACGGCTCAACGGAAACGAGCAGCAGCAGCAGCAGCAGCAGGGATCA
CGCCAACATTACGCCGGCAGCGGGTGGCCGGGGTGGCGCCGCAACAGCCG
AGGCGGAGGCAAGAGGCAGCATGTCAGCCGGAGCTTAGACGGCGGGGCGG
CGGCAGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCACCAGCAGAG
AGACACCGTGGGCCGCCGGGCGCAGTAGCCTTCCTGCCGGGAGGCTTCGG
CGTTGGGGCGCGGCAGGGACAGGGACAGCGGCAACGGCAACACCAGCACC
GA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14376:1700..2651-

>mRNA_L-elsbetiae_contig14376.3230.1 ID=mRNA_L-elsbetiae_contig14376.3230.1|Name=mRNA_L-elsbetiae_contig14376.3230.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig14376:1700..2651- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTGCTCAGGATGGAGCTGCTCAGGGCCACCACCGAGCAGAAGAG
ACAGCTTGAGCCAAAGCAGCTCCTCCCAGGCCGACCCTATGGGTATCGCC
GTCTGCAGTGGCCCCTCTTCCGCGCACTGGCGGCGGCGCTGGTCTACCTT
GGCACGGCCACCGGGGCGGCGGCGGCCAGCACGGCACCGACCAAGGTACG
GCTCAACGGAAACGAGCAGCAGCAGCAGCAGCAGCAGGGATCACGCCAAC
ATTACGCCGGCAGCGGGTGGCCGGGGTGGCGCCGCAACAGCCGAGGCGGA
GGCAAGAGGCAGCATGTCAGCCGGAGCTTAGACGGCGGGGCGGCGGCAGC
GGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCACCAGCAGAGAGACACC
GTGGGCCGCCGGGCGCAGTAGCCTTCCTGCCGGGAGGCTTCGGCGTTGGG
GCGCGGCAGGGACAGGGACAGCGGCAACGGCAACACCAGCACCGAGCCAC
CACCGAGCAGAAGAGACAGCTTGAGCCAAAGCAGCTCCTCCCAGGCCGAC
CCTATGGGTATCGCCGTCTGCAGTGGCCCCTCTTCCGCGCACTGGCGGCG
GCGCTGGTCTACCTTGGCACGGCCACCGGGGCGGCGGCGGCCAGCACGGC
ACCGACCAAGGTACGGCTCAACGGAAACGAGCAGCAGCAGCAGCAGCAGC
AGGGATCACGCCAACATTACGCCGGCAGCGGGTGGCCGGGGTGGCGCCGC
AACAGCCGAGGCGGAGGCAAGAGGCAGCATGTCAGCCGGAGCTTAGACGG
CGGGGCGGCGGCAGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCAC
CAGCAGAGAGACACCGTGGGCCGCCGGGCGCAGTAGCCTTCCTGCCGGGA
GGCTTCGGCGTTGGGGCGCGGCAGGGACAGGGACAGCGGCAACGGCAACA
CCAGCACCGA
back to top