mRNA_L-elsbetiae_contig14364.3223.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14364.3223.1
Unique NamemRNA_L-elsbetiae_contig14364.3223.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.580e-45
Identity = 83/93 (89.25%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 CLFVR--QVKSSVAMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +  +VKSSV MLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSY+DEFDFRVSNLAVDLRDGVRLTRLMEVVTGEW LA  LRVPAVSRLQ
Sbjct:  496 CLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYIDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQ 588
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.630e-44
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 CLFVR--QVKSSVAMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +  +VKSSV MLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSY+DEFDF VSNLAVDLRDGVRLTRLMEVVTGEW LA  LRVPAVSRLQ
Sbjct:  383 CLFRKTAEVKSSVGMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYIDEFDFHVSNLAVDLRDGVRLTRLMEVVTGEWGLAIGLRVPAVSRLQ 475
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: UPI001B88C795 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88C795)

HSP 1 Score: 106 bits (265), Expect = 6.940e-25
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 CLFVR--QVKSSVAMLKVFCQ-FLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLFV+  Q+KSS  ML  F + FL GEGD  RHL+ +GY V HVQS +DEFD+ V+NLA DL+DG+RLTRL E++TGEW  +  LR PA +++Q
Sbjct:  156 CLFVKDAQIKSSREMLLSFSRNFLSGEGDLTRHLQHLGYSVSHVQSSLDEFDYTVTNLATDLQDGLRLTRLAEILTGEWKFSELLRTPATTKMQ 249
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: UPI000719C160 (abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719C160)

HSP 1 Score: 106 bits (265), Expect = 7.160e-25
Identity = 53/94 (56.38%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 CLFVRQV--KSSVAMLKVFC-QFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +    K+S ++L  F  Q+L GEGD VRHL  +GY + H Q+ +DEFD+ V+N+A DLRDG+RLTR+ME++TG+W L+ RLRVPA+SRLQ
Sbjct: 1441 CLFCKSAPYKASKSLLVEFSRQYLAGEGDVVRHLAHLGYDIAHQQTALDEFDYAVTNVATDLRDGLRLTRVMELLTGDWSLSKRLRVPAISRLQ 1534
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: A0A7S3UPS8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPS8_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 8.720e-25
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 CLFVRQ--VKSSVAMLKVFC-QFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWD--LAARLRVPAVSRLQ 273
            CL+ ++  VKSS  +L  FC ++L GEGD +RHLK+M YVVGH Q  +DEFDF V +L+VDLRDGVRL RL+E++TG +D  L+  +R+PA SRL+
Sbjct:   23 CLWKKEGKVKSSSEVLTTFCREYLQGEGDILRHLKQMKYVVGHRQQPIDEFDFAVHSLSVDLRDGVRLVRLVELLTGRFDFPLSRTVRLPADSRLR 118
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: R7TU08_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TU08_CAPTE)

HSP 1 Score: 104 bits (259), Expect = 4.630e-24
Identity = 52/94 (55.32%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    1 CLFVRQ--VKSSVAMLKVFC-QFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +   +K+S  +L  F  +FL GEGD  RHL  +GY V HVQ+ +DEFDF V+NLA DLRDG+R+TR++E++T  W L   LRVPA+SRLQ
Sbjct: 1041 CLFCKNSDIKTSREVLITFAKEFLRGEGDITRHLSYLGYSVSHVQTALDEFDFAVNNLATDLRDGIRITRVIEMLTSSWSLHTSLRVPAISRLQ 1134
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: A0A210QLT1_MIZYE (Abnormal spindle-like microcephaly-associated protein-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QLT1_MIZYE)

HSP 1 Score: 104 bits (259), Expect = 4.630e-24
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 CLFVR--QVKSSVAMLKVFCQ-FLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +  + KS+ AML  F + +L GEGD  +HL  +GYVV H Q+ +DEFD+ V+NLA DLRDG+RLTR++E++T  WDL+ +LR PA+SRLQ
Sbjct: 1436 CLFCKDSEFKSTKAMLIQFSRNYLSGEGDVTKHLGYLGYVVTHQQTSMDEFDYAVTNLATDLRDGIRLTRILELLTNHWDLSKKLRTPAISRLQ 1529
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: UPI0014586E23 (LOW QUALITY PROTEIN: abnormal spindle-like microcephaly-associated protein homolog n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014586E23)

HSP 1 Score: 103 bits (256), Expect = 1.180e-23
Identity = 53/94 (56.38%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 CLFVR--QVKSSVAMLKVFCQ-FLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            CLF +  + KS+ AML  F + +L GEGD  +HL  +GYVV H Q+ +DEFD+ V+NLA DLRDGVRLTR++E++T  WDL+  LR PA+SRLQ
Sbjct: 1410 CLFCKDSEYKSTKAMLIQFSRNYLSGEGDVTKHLGYLGYVVTHQQTSMDEFDYAVTNLATDLRDGVRLTRVLELLTNHWDLSKTLRAPAISRLQ 1503
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: A0A835Z978_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z978_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.590e-23
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 CLFVRQ--VKSSVAMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEW-----DLAARLRVPAVSRLQ 273
            CLF+R+  VK+S  ++K  CQF+ GEGD V+HLKK+GY V HVQ YVDE+DF V++L  DLRDGVRL RL E++T         L ++LRVP V R Q
Sbjct:  565 CLFLREAEVKTSEGIIKGLCQFMRGEGDVVKHLKKLGYKVSHVQRYVDEYDFTVTSLKTDLRDGVRLVRLAELLTQGTGKPVGQLTSQLRVPPVDRTQ 662
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BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Match: A0A821Z386_9NEOB ((mimic poison frog) hypothetical protein (Fragment) n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821Z386_9NEOB)

HSP 1 Score: 95.5 bits (236), Expect = 2.920e-23
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   16 QVKSSVAMLKVFCQ-FLHGEGDFVRHLKKMGYVVGHVQSYVDEFDFRVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ 273
            + K+S  +L  F + FL GEGD  RHL  +G  VGHVQ+ +DEFDF V+NLAVDL+ GVRL R ME++T  W  + +LRVPA+SRLQ
Sbjct:    7 EFKASKELLLAFSRDFLSGEGDLSRHLGFLGLTVGHVQTPLDEFDFAVTNLAVDLQCGVRLVRTMELLTQNWSFSKKLRVPAISRLQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14364.3223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN9_ECTSI5.580e-4589.25Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE2.630e-4488.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001B88C7956.940e-2557.45abnormal spindle-like microcephaly-associated prot... [more]
UPI000719C1607.160e-2556.38abnormal spindle-like microcephaly-associated prot... [more]
A0A7S3UPS8_HETAK8.720e-2556.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
R7TU08_CAPTE4.630e-2455.32Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A210QLT1_MIZYE4.630e-2455.32Abnormal spindle-like microcephaly-associated prot... [more]
UPI0014586E231.180e-2356.38LOW QUALITY PROTEIN: abnormal spindle-like microce... [more]
A0A835Z978_9STRA1.590e-2355.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A821Z386_9NEOB2.920e-2356.32(mimic poison frog) hypothetical protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14364contigL-elsbetiae_contig14364:635..1363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue8.1e-39
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.282599-CDS-L-elsbetiae_contig14364:634..7711622815574.282599-CDS-L-elsbetiae_contig14364:634..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14364 635..771 -
1691682968.0934575-CDS-L-elsbetiae_contig14364:634..7711691682968.0934575-CDS-L-elsbetiae_contig14364:634..771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14364 635..771 -
1622815574.2982473-CDS-L-elsbetiae_contig14364:1227..13631622815574.2982473-CDS-L-elsbetiae_contig14364:1227..1363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14364 1228..1363 -
1691682968.1044004-CDS-L-elsbetiae_contig14364:1227..13631691682968.1044004-CDS-L-elsbetiae_contig14364:1227..1363Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14364 1228..1363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14364.3223.1prot_L-elsbetiae_contig14364.3223.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14364 635..1363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14364.3223.1

>prot_L-elsbetiae_contig14364.3223.1 ID=prot_L-elsbetiae_contig14364.3223.1|Name=mRNA_L-elsbetiae_contig14364.3223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
CLFVRQVKSSVAMLKVFCQFLHGEGDFVRHLKKMGYVVGHVQSYVDEFDF
RVSNLAVDLRDGVRLTRLMEVVTGEWDLAARLRVPAVSRLQ
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mRNA from alignment at L-elsbetiae_contig14364:635..1363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14364.3223.1 ID=mRNA_L-elsbetiae_contig14364.3223.1|Name=mRNA_L-elsbetiae_contig14364.3223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=729bp|location=Sequence derived from alignment at L-elsbetiae_contig14364:635..1363- (Laminarionema elsbetiae ELsaHSoW15)
TGTTTGTTTGTTCGCCAGGTGAAGTCTAGCGTGGCCATGCTAAAGGTGTT
CTGCCAGTTTCTTCACGGGGAGGGGGACTTCGTGCGGCACCTCAAGAAGA
TGGGATACGTCGTTGGGCACGTGCAGTCTTACGTAGGTGAGAGCGGGAAA
GGGGGCGGGGGGGGGGGGGGGGGGGGGCTTGGGGGTATGGGTGGGGGGGG
GAAAAAGGGTGTGGTTTTTTTTTTTTTTTTTCTTTGCGGGCGAACCCGGN
NNNNNNNNNGAGAGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTCTCTTGGAGT
CTTGGTATGGCAAGGCAAAAGCGTTTGGTCCTTCGATTTTGATTTCCTTG
CGGTCGAACACGGATGTGTTTGTAGTTATGGATTGTAGTTTTGCGGCGAA
AAGGTTCGCCAGAAGCGTGCCTGTGATGCATCGCGGTGGTCTCTTTGCTG
CCGCTGCTGATGCTGCTGCTGATGCTGTTTTTTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCTGTCGTCGTGGGTGTGCCGCCCGCAACAGACGAGTTC
GACTTCCGCGTGAGCAACCTGGCTGTTGACCTCCGCGACGGCGTGCGGCT
GACTCGGCTGATGGAGGTGGTGACGGGCGAGTGGGACCTGGCCGCGAGGC
TTCGCGTTCCCGCCGTTTCGAGGCTTCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14364:635..1363-

>mRNA_L-elsbetiae_contig14364.3223.1 ID=mRNA_L-elsbetiae_contig14364.3223.1|Name=mRNA_L-elsbetiae_contig14364.3223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig14364:635..1363- (Laminarionema elsbetiae ELsaHSoW15)
TGTTTGTTTGTTCGCCAGGTGAAGTCTAGCGTGGCCATGCTAAAGGTGTT
CTGCCAGTTTCTTCACGGGGAGGGGGACTTCGTGCGGCACCTCAAGAAGA
TGGGATACGTCGTTGGGCACGTGCAGTCTTACGTAGTGTTTGTTTGTTCG
CCAGGTGAAGTCTAGCGTGGCCATGCTAAAGGTGTTCTGCCAGTTTCTTC
ACGGGGAGGGGGACTTCGTGCGGCACCTCAAGAAGATGGGATACGTCGTT
GGGCACGTGCAGTCTTACGTAGACGAGTTCGACTTCCGCGTGAGCAACCT
GGCTGTTGACCTCCGCGACGGCGTGCGGCTGACTCGGCTGATGGAGGTGG
TGACGGGCGAGTGGGACCTGGCCGCGAGGCTTCGCGTTCCCGCCGTTTCG
AGGCTTCAGACGAGTTCGACTTCCGCGTGAGCAACCTGGCTGTTGACCTC
CGCGACGGCGTGCGGCTGACTCGGCTGATGGAGGTGGTGACGGGCGAGTG
GGACCTGGCCGCGAGGCTTCGCGTTCCCGCCGTTTCGAGGCTTCAG
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