mRNA_L-elsbetiae_contig1434.3208.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: D8LKH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKH7_ECTSI) HSP 1 Score: 221 bits (563), Expect = 7.600e-71 Identity = 146/183 (79.78%), Postives = 148/183 (80.87%), Query Frame = 1 Query: 1 MKVTASIATAVALLAPAQAFVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKK---DGGFNMGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPVGAGGGMPGAK 540 MKVTASIATAVALLAPAQ FV+S XXXXXXXXXXXXXXX DGGFNMGNMMEGLKKANEIGQKTKDLQKDLE LKVEGKSPCGMVTVT+TGQQMPLSCDISEEAMAEGAK V EKVAAAQQAAHTESLQ MSKRLAELYSEMGLPVGAGGGMPGAK Sbjct: 1 MKVTASIATAVALLAPAQGFVISSSFVGAQHRCAAKSGASTTARPQQPXXXXXXXXXXXXXXXXXXXXDGGFNMGNMMEGLKKANEIGQKTKDLQKDLELLKVEGKSPCGMVTVTVTGQQMPLSCDISEEAMAEGAKAVAEKVAAAQQAAHTESLQTMSKRLAELYSEMGLPVGAGGGMPGAK 183
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A835YMC5_9STRA (Nucleoid-associated protein YbaB family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC5_9STRA) HSP 1 Score: 112 bits (279), Expect = 5.070e-28 Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 1 Query: 202 GFNMGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPVG 513 G NMG+MME LKKANEIG+K+K++Q +LE +++EGKS G VT+TGQQ+P+ C+I E ++EG + V V A AH ESL VM K++AELY MGLPVG Sbjct: 62 GLNMGSMMESLKKANEIGRKSKEMQDELEKMRLEGKSSNGKAKVTMTGQQIPVGCEIDESLLSEGKEAVQTAVLEAMTEAHKESLMVMGKKMAELYQGMGLPVG 165
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A7S2WN77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WN77_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.390e-17 Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 1 Query: 211 MGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLP-VGAGGGMPG 534 MG+MME KK EIG+KTK+LQK+L +++E KS V+VT++GQQ LS IS++AM G + V +++ + Q AH +S +VM+ +L E+ ++ +P +G GGMPG Sbjct: 60 MGDMMEQFKKVQEIGRKTKELQKELAEMQIEEKSEDESVSVTISGQQAMLSAYISKDAMDAGKEEVEKRLMESLQKAHLKSFEVMNTKLMEITKDLDIPGLGGPGGMPG 168
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A7S3MQT1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MQT1_9SPIT) HSP 1 Score: 82.0 bits (201), Expect = 2.460e-16 Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 1 Query: 211 MGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPVGAGGGMPG 534 MGNMME +KKA E+G K K LQ++L +VE S G VTV ++G Q+P+ +++E ++GAK V + A + AH S++ +L ELY+E+GLP+ GG G Sbjct: 65 MGNMMETIKKAQEMGVKVKALQEELVNTEVEATSADGGVTVVISGAQVPMDVKVTDEMCSKGAKAVSAAITDAMREAHKNSMEYSKSKLTELYAEIGLPMPPEGGAGG 172
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: R1FFN9_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FFN9_EMIHU) HSP 1 Score: 80.1 bits (196), Expect = 1.000e-15 Identity = 42/105 (40.00%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 211 MGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPVGAGGG 525 MGNMME +KKA E+G K K LQ++L ++E + G VTV ++G Q+P+ +SE+ ++GA+ V + ++ A + AH S++ ++L LY+E+GLP+ GG Sbjct: 56 MGNMMETIKKAQEVGVKVKALQEELVNTEIEATAADGGVTVVISGAQVPMDVKVSEDLCSKGAEAVSDAISLAMREAHKNSMEYSKQKLGALYAEIGLPMPPEGG 160
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A0M0JAF8_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAF8_9EUKA) HSP 1 Score: 80.1 bits (196), Expect = 1.770e-15 Identity = 41/98 (41.84%), Postives = 67/98 (68.37%), Query Frame = 1 Query: 217 NMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPV 510 NMME +KKA ++G K K LQ++L ++E S G TV ++G Q+P+S +++E +A+G+K V E V+ A + AHT S+ +++A LY+E+GLP+ Sbjct: 88 NMMETIKKAQQVGVKVKALQEELAQTEIEAISADGGCTVVISGAQVPISVEVTEALLAKGSKAVSEAVSVAAKEAHTNSVSYAQEQMATLYAEIGLPI 185
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A7S3ESI0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ESI0_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 9.190e-14 Identity = 43/107 (40.19%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 193 KDGGFNMG-NMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPV 510 KD G G NMME +KKA ++G K K+LQ++L ++E + G V+V+++G +P+S +S E +A+GA+ V V A + AH S+ R+ ELY+E+GLP+ Sbjct: 55 KDEGMGGGLNMMETIKKAQQVGVKVKELQEELANTEIEATAAEGGVSVSVSGANVPISVTVSPELVAQGAEAVSTAVTLATKEAHRNSMAYAKDRMTELYTEIGLPM 161
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A7S4B6N1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6N1_CHRCT) HSP 1 Score: 75.1 bits (183), Expect = 1.230e-13 Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1 Query: 226 EGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLPVGAGGGMP 531 E +KK +E+GQK ++LQ++L +VE + G + V +TG Q+PLS ++S+E +A GA+ + E+VAAA + AH +S +R+AELY +MGL G GMP Sbjct: 83 EMMKKYSEVGQKVQELQEELTQTEVECSTNEGGIVVKVTGTQVPLSVEVSDEMLAGGAEKLSEQVAAALKQAHAKSGGYAQQRMAELYDQMGL----GAGMP 180
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: A0A2N5JN90_9CYAN (Nucleoid-associated protein CV045_10450 n=1 Tax=Cyanobacteria bacterium M5B4 TaxID=2054928 RepID=A0A2N5JN90_9CYAN) HSP 1 Score: 73.2 bits (178), Expect = 1.280e-13 Identity = 38/103 (36.89%), Postives = 70/103 (67.96%), Query Frame = 1 Query: 199 GGFNMGNMMEGLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLP 507 GGF +G + E +KAN++ +++++LQ +LE ++++G++ G+V VT++G Q P + I+ EA+ +G +V+ + V A + A+ S Q M R+ EL +E+GLP Sbjct: 5 GGFGLGKIKEAFQKANQLKERSQELQSELEEMRLDGEAGGGLVKVTVSGNQEPQAIVIAPEAIEQGKEVLEDLVLTAMRNAYQLSAQTMKNRMEELTNELGLP 107
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Match: UPI0019E43CCB (YbaB/EbfC family nucleoid-associated protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019E43CCB) HSP 1 Score: 72.4 bits (176), Expect = 2.790e-13 Identity = 41/105 (39.05%), Postives = 68/105 (64.76%), Query Frame = 1 Query: 202 GFNMGNMME---GLKKANEIGQKTKDLQKDLEALKVEGKSPCGMVTVTLTGQQMPLSCDISEEAMAEGAKVVGEKVAAAQQAAHTESLQVMSKRLAELYSEMGLP 507 GF +G M E +KKA ++ + K LQ++LE ++++G++ G VTVT++G Q PL ISEEA+ EGA+V+ + V AA + A+ +S + M ++ +L + LP Sbjct: 8 GFGLGKMKELTEAIKKAQQVQEGAKQLQEELEDMRIQGEAGGGKVTVTMSGNQEPLDVSISEEALGEGAEVLSDLVLAAVKDAYGKSTETMKGKMEDLTGGLNLP 112 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1434.3208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1434.3208.1 >prot_L-elsbetiae_contig1434.3208.1 ID=prot_L-elsbetiae_contig1434.3208.1|Name=mRNA_L-elsbetiae_contig1434.3208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp MKVTASIATAVALLAPAQAFVVSSSSFVAAQQRSAAPSTSRLQPVMLFGGback to top mRNA from alignment at L-elsbetiae_contig1434:17298..22739+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1434.3208.1 ID=mRNA_L-elsbetiae_contig1434.3208.1|Name=mRNA_L-elsbetiae_contig1434.3208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5442bp|location=Sequence derived from alignment at L-elsbetiae_contig1434:17298..22739+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1434:17298..22739+ >mRNA_L-elsbetiae_contig1434.3208.1 ID=mRNA_L-elsbetiae_contig1434.3208.1|Name=mRNA_L-elsbetiae_contig1434.3208.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1434:17298..22739+ (Laminarionema elsbetiae ELsaHSoW15)back to top |