mRNA_L-elsbetiae_contig14336.3203.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14336.3203.1
Unique NamemRNA_L-elsbetiae_contig14336.3203.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14336.3203.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.800e-31
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 1 
Query:    1 GAWDAAGLATESMAVLP---SSDGGGSDVNLTCLSFHLSDFTVSAEGLDTAFRPVSPTAGVDVVLKVRNVSFMGVVLLLMVLLLLAVARITSRMADAKTKLARRLSGRADDWYIATGTAKEHPSLFISVEADPLVEVRHR 411
            G WD  GL TE+ A+ P   S+ GG +D+N+TC SFHLSDFT+SA+ + + F+ V  TAG+ VVL+VR++S MGV+LLL VLLLL V R  SRMAD KT L++ L G+ D+ Y+ATG ++  P+L   V+A+P  +  HR
Sbjct:  309 GLWDEDGLVTEA-AITPIDESNAGGLTDLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVVLEVRDISKMGVLLLLFVLLLLVVLRTISRMADVKTNLSKELEGKTDEVYLATGKSRNRPTLGALVQANPTPDTHHR 447
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BLAST of mRNA_L-elsbetiae_contig14336.3203.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 3.050e-25
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1 
Query:    1 GAWDAAGLATESMAVLP---SSDGGGSDVNLTCLSFHLSDFTVSAEGLDTAFRPVSPTAGVDVVLKVRNVSFMGVVLLLMVLLLLAVARITSRMADAKTKLARRLSGRADDWYIATGTAKEHPSLFISVEADPLVEVRHR 411
            G WD  GL TE+ A+ P   S+  G + +N+TC SFHLSDFT+SA+ + + F+ V  TAG+ V LKVR +S MG +LLL V     + R T+RMAD KT L+++L+ + D+ Y+ATG ++  P+L   V+ADP  +  HR
Sbjct: 1281 GLWDEDGLVTEA-AITPMDESNADGLTGLNVTCWSFHLSDFTISADEVGSGFQHVDLTAGIAVFLKVREISKMGGLLLLFVXXXXXLLRTTARMADVKTNLSKQLARKTDEVYVATGKSRNRPTLAALVQADPTPDTHHR 1419
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14336.3203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE4.800e-3151.43GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4X3_ECTSI3.050e-2545.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14336contigL-elsbetiae_contig14336:1690..3286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D7G4X3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size528
Cds size528
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14336.3203.1prot_L-elsbetiae_contig14336.3203.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14336 1690..3286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.7806544-CDS-L-elsbetiae_contig14336:1689..18511622815572.7806544-CDS-L-elsbetiae_contig14336:1689..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 1690..1851 +
1691682967.2938106-CDS-L-elsbetiae_contig14336:1689..18511691682967.2938106-CDS-L-elsbetiae_contig14336:1689..1851Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 1690..1851 +
1622815572.7970304-CDS-L-elsbetiae_contig14336:2183..23661622815572.7970304-CDS-L-elsbetiae_contig14336:2183..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 2184..2366 +
1691682967.306684-CDS-L-elsbetiae_contig14336:2183..23661691682967.306684-CDS-L-elsbetiae_contig14336:2183..2366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 2184..2366 +
1622815572.8142128-CDS-L-elsbetiae_contig14336:3103..32861622815572.8142128-CDS-L-elsbetiae_contig14336:3103..3286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 3104..3286 +
1691682967.3154898-CDS-L-elsbetiae_contig14336:3103..32861691682967.3154898-CDS-L-elsbetiae_contig14336:3103..3286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14336 3104..3286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14336.3203.1

>prot_L-elsbetiae_contig14336.3203.1 ID=prot_L-elsbetiae_contig14336.3203.1|Name=mRNA_L-elsbetiae_contig14336.3203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
GAWDAAGLATESMAVLPSSDGGGSDVNLTCLSFHLSDFTVSAEGLDTAFR
PVSPTAGVDVVLKVRNVSFMGVVLLLMVLLLLAVARITSRMADAKTKLAR
RLSGRADDWYIATGTAKEHPSLFISVEADPLVEVRHRRHHYGHHKHHHGH
RHGRRRRRKERRMKLLRRHLIQRCV*
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mRNA from alignment at L-elsbetiae_contig14336:1690..3286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14336.3203.1 ID=mRNA_L-elsbetiae_contig14336.3203.1|Name=mRNA_L-elsbetiae_contig14336.3203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1597bp|location=Sequence derived from alignment at L-elsbetiae_contig14336:1690..3286+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTTGGGACGCGGCGGGGCTGGCGACCGAGTCGATGGCGGTGCTGCC
ATCAAGCGATGGCGGCGGGAGCGACGTCAACCTCACGTGCCTCTCGTTTC
ACCTGTCAGACTTCACGGTCTCCGCCGAGGGGTTGGACACCGCCTTCAGG
CCGGTCTCGCCGGTGAGAGAAGTGGTTTTCCCCCGCCCGCGCGAGAACGG
CAGGTTCTAAACAAGATGTTGTTGCCCTCTACGTTACGACCAACTTCCTT
GGCAATCCTTGCCGCGGAACGTGGGCTGTGCCTGCCTTTCGCAACAGAGA
AGGGATGCTGATTTTCTCTGCGGTACAGTAGCAGCGATGGTCTCGTGTTG
TTTCGCCGGCCCGGCACCCCTGAAGCTCAGGCATACGTACATGCTGTCGA
GCACTAAAAACGGAGCCCCAGAAAAAATACAAGCACTAACAGAATACCCT
CAATGGAAAACTCAGCTTTTTCCGCGACCACTGCTGCTCTGCAGACGGCA
GGCGTTGACGTCGTCCTCAAGGTGCGAAATGTATCCTTCATGGGCGTGGT
TCTGCTGCTGATGGTGCTGCTCCTCCTGGCCGTCGCTCGGATCACTTCGA
GGATGGCGGACGCCAAAACCAAGCTAGCCCGGCGGCTGTCGGGGAGGGCG
GACGACTGGTACATCGCCACGGGGACGGTGCGGCCCCCCTGTCTCTCCCT
TTTCCCGCCGAACTAGTGTCATTGTTGTTGTTGTTGTTGTTGTTGATGTT
GTTTTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGATGATGAAGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTCGTTGTTGTAG
TTGATGTTGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGCTGCTATTGTT
GTTGTTGTTGCTGCTGCTGTTGTTGTTGTTGTTGTTGTTGATGTTGTTGC
TGTTGCTGCAGCAGCTGCTGTTGTTGTTGTTGTTGCTGCTGCTGCTACTG
TCGTTGCTGTTGCTGCTGCTGCTGCTGTTGTGGTTGCTGTTGCTGCTGCT
GTTGCTGCTGCTGCTGCTGTTGCTGCTGTTGTTACTGCTGTCGCTGCCGC
CATTACCGTTGCTTCCGCGCCGCCGACGTCGAGTGCTTACTGTTTTTTGG
GAGACCGAAACAAATAGCCGTTCACGCATGTCACCTCGTCCCGAAGCGTG
CCGTCATGCGTGTCGACACGGCTTTGCCTCACCTTTTGGCTTGTTACAAC
GGCCTGTGGGGATGATGATCTCGATGCTCAACGTTATTCCCGCCATCGCT
TGAGAGAGCCTCTTGGTTATCTTTTCCCTCTGTGGGGCGACGAACCCGCC
CCGCATCACTCTCCCTAAAGATCCTTCGTCCCTTTTTGCCGACGGACAAT
GTCGGTACCTACAGGCAAAGGAGCACCCTTCCCTGTTCATCAGTGTCGAG
GCAGACCCGCTGGTGGAGGTGCGCCACCGTCGGCACCACTATGGGCACCA
CAAGCACCACCATGGGCACCGCCATGGGCGCCGCAGGAGACGGAAGGAAA
GACGCATGAAGTTGCTCCGACGGCACCTGATTCAGAGGTGTGTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14336:1690..3286+

>mRNA_L-elsbetiae_contig14336.3203.1 ID=mRNA_L-elsbetiae_contig14336.3203.1|Name=mRNA_L-elsbetiae_contig14336.3203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig14336:1690..3286+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCTTGGGACGCGGCGGGGCTGGCGACCGAGTCGATGGCGGTGCTGCC
ATCAAGCGATGGCGGCGGGAGCGACGTCAACCTCACGTGCCTCTCGTTTC
ACCTGTCAGACTTCACGGTCTCCGCCGAGGGGTTGGACACCGCCTTCAGG
CCGGTCTCGCCGGGGGCTTGGGACGCGGCGGGGCTGGCGACCGAGTCGAT
GGCGGTGCTGCCATCAAGCGATGGCGGCGGGAGCGACGTCAACCTCACGT
GCCTCTCGTTTCACCTGTCAGACTTCACGGTCTCCGCCGAGGGGTTGGAC
ACCGCCTTCAGGCCGGTCTCGCCGACGGCAGGCGTTGACGTCGTCCTCAA
GGTGCGAAATGTATCCTTCATGGGCGTGGTTCTGCTGCTGATGGTGCTGC
TCCTCCTGGCCGTCGCTCGGATCACTTCGAGGATGGCGGACGCCAAAACC
AAGCTAGCCCGGCGGCTGTCGGGGAGGGCGGACGACTGGTACATCGCCAC
GGGGACGACGGCAGGCGTTGACGTCGTCCTCAAGGTGCGAAATGTATCCT
TCATGGGCGTGGTTCTGCTGCTGATGGTGCTGCTCCTCCTGGCCGTCGCT
CGGATCACTTCGAGGATGGCGGACGCCAAAACCAAGCTAGCCCGGCGGCT
GTCGGGGAGGGCGGACGACTGGTACATCGCCACGGGGACGGCAAAGGAGC
ACCCTTCCCTGTTCATCAGTGTCGAGGCAGACCCGCTGGTGGAGGTGCGC
CACCGTCGGCACCACTATGGGCACCACAAGCACCACCATGGGCACCGCCA
TGGGCGCCGCAGGAGACGGAAGGAAAGACGCATGAAGTTGCTCCGACGGC
ACCTGATTCAGAGGTGTGTGTAGGCAAAGGAGCACCCTTCCCTGTTCATC
AGTGTCGAGGCAGACCCGCTGGTGGAGGTGCGCCACCGTCGGCACCACTA
TGGGCACCACAAGCACCACCATGGGCACCGCCATGGGCGCCGCAGGAGAC
GGAAGGAAAGACGCATGAAGTTGCTCCGACGGCACCTGATTCAGAGGTGT
GTGTAG
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